Wall clock time and date at job start Tue Mar 31 2020 12:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 N 1.46900 * 109.46909 * 120.00187 * 2 1 3 5 5 C 1.46903 * 111.00068 * 274.99832 * 4 2 1 6 6 C 1.53000 * 109.46941 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.54276 * 300.17516 * 6 5 4 8 8 C 1.53179 * 109.61950 * 60.38801 * 6 5 4 9 9 C 1.53089 * 109.16199 * 176.88305 * 8 6 5 10 10 O 1.42904 * 109.42216 * 302.40419 * 9 8 6 11 11 C 1.42903 * 114.09797 * 61.15831 * 10 9 8 12 12 C 1.53098 * 109.41089 * 298.83864 * 11 10 9 13 13 C 1.50700 * 109.46845 * 240.00031 * 2 1 3 14 14 C 1.38299 * 119.93196 * 279.72450 * 13 2 1 15 15 C 1.38106 * 120.07055 * 179.72307 * 14 13 2 16 16 C 1.38885 * 119.92497 * 0.55560 * 15 14 13 17 17 O 1.35746 * 120.06502 * 179.74191 * 16 15 14 18 18 C 1.34828 * 117.00150 * 174.43740 * 17 16 15 19 19 H 1.07999 * 119.99675 * 5.06448 * 18 17 16 20 20 C 1.38649 * 120.00592 * 185.05617 * 18 17 16 21 21 N 1.31560 * 119.99496 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00379 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47650 * 89.99796 * 22 20 18 24 24 H 1.48500 * 109.47461 * 210.00241 * 22 20 18 25 25 H 1.48507 * 109.47053 * 329.99799 * 22 20 18 26 26 C 1.38881 * 119.86428 * 359.72169 * 16 15 14 27 27 C 1.38096 * 119.92808 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46940 * 299.99910 * 1 2 3 29 29 H 1.09007 * 109.47187 * 59.99713 * 1 2 3 30 30 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 31 31 H 1.00904 * 111.00220 * 151.04042 * 4 2 1 32 32 H 1.08998 * 109.46785 * 60.00308 * 5 4 2 33 33 H 1.08995 * 109.46947 * 299.99952 * 5 4 2 34 34 H 1.08994 * 109.46991 * 299.82554 * 7 6 5 35 35 H 1.08999 * 109.46922 * 59.82443 * 7 6 5 36 36 H 1.08998 * 109.47020 * 179.82073 * 7 6 5 37 37 H 1.08993 * 109.51670 * 56.97411 * 8 6 5 38 38 H 1.09004 * 109.52804 * 296.79143 * 8 6 5 39 39 H 1.09006 * 109.47956 * 182.42010 * 9 8 6 40 40 H 1.08996 * 109.48601 * 62.39270 * 9 8 6 41 41 H 1.08998 * 109.48355 * 58.81987 * 11 10 9 42 42 H 1.08997 * 109.48203 * 178.85062 * 11 10 9 43 43 H 1.09003 * 109.51818 * 177.51412 * 12 11 10 44 44 H 1.08996 * 109.52568 * 297.63881 * 12 11 10 45 45 H 1.07997 * 119.96619 * 0.02562 * 14 13 2 46 46 H 1.07989 * 120.03522 * 180.27671 * 15 14 13 47 47 H 0.97008 * 119.99281 * 179.97438 * 21 20 18 48 48 H 1.07997 * 120.03190 * 179.97438 * 26 16 15 49 49 H 1.08004 * 119.96101 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5330 3.5742 7 6 1.6506 -1.6926 3.8942 8 6 3.9991 -1.0792 3.2918 9 6 4.5341 -1.7654 4.5514 10 8 4.5405 -0.8328 5.6342 11 6 3.2489 -0.3246 5.9742 12 6 2.6623 0.4197 4.7718 13 6 2.0323 -0.7104 -1.2305 14 6 2.0714 -2.0925 -1.2617 15 6 2.5258 -2.7466 -2.3900 16 6 2.9545 -2.0147 -3.4897 17 8 3.4066 -2.6546 -4.5982 18 6 3.6984 -1.8904 -5.6700 19 1 3.6473 -0.8142 -5.5958 20 6 4.0641 -2.4861 -6.8674 21 7 4.1260 -3.7971 -6.9579 22 14 4.4690 -1.4272 -8.3521 23 1 5.9197 -1.1102 -8.3533 24 1 4.1220 -2.1631 -9.5944 25 1 3.6868 -0.1664 -8.2890 26 6 2.9194 -0.6268 -3.4531 27 6 2.4590 0.0212 -2.3238 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9172 -1.1207 1.0287 32 1 1.0870 0.6162 2.5525 33 1 2.7588 1.0460 2.1183 34 1 0.6545 -1.3022 4.1025 35 1 1.6044 -2.3697 3.0413 36 1 2.0194 -2.2319 4.7666 37 1 4.6606 -0.2583 3.0153 38 1 3.9519 -1.8007 2.4761 39 1 5.5493 -2.1184 4.3697 40 1 3.8949 -2.6113 4.8040 41 1 2.5926 -1.1516 6.2453 42 1 3.3381 0.3602 6.8175 43 1 1.6591 0.7701 5.0144 44 1 3.2962 1.2716 4.5261 45 1 1.7417 -2.6610 -0.4047 46 1 2.5519 -3.8259 -2.4154 47 1 4.3815 -4.2138 -7.7958 48 1 3.2525 -0.0550 -4.3065 49 1 2.4311 1.1005 -2.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224742811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:27 Heat of formation + Delta-G solvation = -62.635035 kcal Electronic energy + Delta-G solvation = -26901.204221 eV Core-core repulsion = 23214.256964 eV Total energy + Delta-G solvation = -3686.947258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28219 -39.18308 -37.60935 -36.23241 -34.38345 -32.27791 -31.43228 -30.47119 -30.09830 -27.94846 -27.92560 -26.13569 -25.38638 -23.87298 -22.92927 -22.21374 -21.52285 -19.92525 -18.77565 -17.94581 -17.13255 -16.51405 -16.24063 -15.76013 -15.36698 -15.20633 -14.64864 -14.62340 -14.46863 -14.06903 -13.86403 -13.74444 -13.65749 -13.25576 -12.81097 -12.63337 -12.58333 -12.35454 -12.30464 -12.10299 -11.88808 -11.68244 -11.52989 -11.50747 -11.31419 -11.20760 -11.12811 -10.74621 -10.64730 -10.61288 -10.44419 -10.38878 -10.24216 -9.60510 -9.35145 -8.84274 -8.35671 -8.18493 -7.19191 -6.46711 -4.05600 2.21063 2.28904 3.11155 3.12237 3.16980 3.64689 3.95153 4.10741 4.42299 4.51717 4.54785 4.62514 4.80172 4.96357 5.03650 5.06172 5.09286 5.11915 5.30495 5.35715 5.37673 5.38964 5.47477 5.52852 5.57215 5.58471 5.67318 5.68387 5.70874 5.82763 5.85670 5.86957 5.93590 5.98075 6.02370 6.09754 6.22239 6.30726 6.38524 6.46480 6.71673 6.85717 6.95918 7.02919 7.04686 7.25574 7.40777 7.42497 7.53547 7.81919 7.98389 8.99009 9.69271 10.71294 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002360 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.573795 B =11860.227690 C =12312.886465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.681 5.681 5 C 0.071 3.929 6 C -0.059 4.059 7 C -0.137 4.137 8 C -0.149 4.149 9 C 0.060 3.940 10 O -0.385 6.385 11 C 0.061 3.939 12 C -0.145 4.145 13 C -0.192 4.192 14 C -0.056 4.056 15 C -0.195 4.195 16 C 0.155 3.845 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.234 4.234 27 C -0.065 4.065 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.344 0.656 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.270 0.730 48 H 0.126 0.874 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 7.507 21.598 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 H 0.057 0.943 4 N -0.314 5.314 5 C -0.059 4.059 6 C -0.060 4.060 7 C -0.194 4.194 8 C -0.187 4.187 9 C -0.016 4.016 10 O -0.304 6.304 11 C -0.016 4.016 12 C -0.184 4.184 13 C -0.194 4.194 14 C -0.074 4.074 15 C -0.214 4.214 16 C 0.101 3.899 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.254 4.254 27 C -0.084 4.084 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.324 6.896 21.611 23.093 hybrid contribution 0.712 1.149 -1.291 1.869 sum -3.612 8.045 20.320 22.151 Atomic orbital electron populations 1.21758 0.94617 1.02222 1.00264 1.20129 0.95092 0.94417 0.86999 0.94318 1.60634 1.33672 1.32822 1.04238 1.21990 1.00144 0.93419 0.90322 1.20586 0.95128 0.95908 0.94332 1.21852 0.98181 0.97743 1.01586 1.22269 0.96176 1.01451 0.98771 1.22612 1.01781 0.91112 0.86130 1.87921 1.28940 1.61533 1.52033 1.22575 0.84941 0.97484 0.96613 1.22226 1.01715 0.98803 0.95613 1.19267 1.10168 0.93803 0.96120 1.20481 0.97168 0.93354 0.96409 1.20254 1.08393 0.99387 0.93394 1.19425 0.91090 0.90922 0.88446 1.83978 1.70655 1.35323 1.18148 1.21315 1.47374 0.90737 0.87395 0.89120 1.25288 0.96793 0.96304 0.98144 1.70044 1.44110 1.08657 1.26915 0.85717 0.78993 0.79067 0.79682 1.19880 1.20227 1.19223 1.21116 1.09867 0.94426 0.99967 1.20582 0.96979 0.98088 0.92773 0.93651 0.92788 0.92012 0.83597 0.91122 0.95554 0.92894 0.90844 0.93422 0.91332 0.90114 0.89016 0.92824 0.92949 0.89240 0.90887 0.91218 0.86342 0.86610 0.92012 0.85666 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.39 37.16 0.35 -1.26 16 2 C 0.14 1.86 2.82 -68.86 -0.19 1.67 16 3 H 0.04 0.51 7.66 -51.93 -0.40 0.11 16 4 N -0.68 -7.74 4.89 -107.95 -0.53 -8.27 16 5 C 0.07 0.69 4.46 -3.82 -0.02 0.67 16 6 C -0.06 -0.51 0.60 -154.32 -0.09 -0.60 16 7 C -0.14 -1.16 7.77 37.16 0.29 -0.87 16 8 C -0.15 -1.35 4.51 -26.59 -0.12 -1.47 16 9 C 0.06 0.53 6.57 37.20 0.24 0.78 16 10 O -0.39 -3.95 10.77 -35.23 -0.38 -4.32 16 11 C 0.06 0.48 6.57 37.21 0.24 0.72 16 12 C -0.15 -1.13 4.92 -26.59 -0.13 -1.26 16 13 C -0.19 -3.15 4.72 -104.58 -0.49 -3.64 16 14 C -0.06 -0.96 8.99 -39.61 -0.36 -1.32 16 15 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16 16 C 0.16 3.71 6.65 -39.10 -0.26 3.45 16 17 O -0.18 -5.06 9.76 0.07 0.00 -5.06 16 18 C -0.39 -10.93 9.49 30.88 0.29 -10.63 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 27 C -0.07 -1.18 9.66 -39.61 -0.38 -1.56 16 28 H 0.04 0.49 7.45 -51.93 -0.39 0.10 16 29 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.34 4.13 6.12 -39.29 -0.24 3.89 16 32 H 0.07 0.68 7.44 -51.93 -0.39 0.30 16 33 H 0.03 0.27 8.05 -51.93 -0.42 -0.15 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.71 7.60 -51.93 -0.39 0.32 16 36 H 0.05 0.38 5.01 -51.93 -0.26 0.12 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.75 6.76 -51.93 -0.35 0.40 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.44 6.60 -51.93 -0.34 0.10 16 41 H 0.05 0.38 6.60 -51.93 -0.34 0.04 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.12 1.80 7.70 -52.49 -0.40 1.40 16 46 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 49 H 0.10 1.61 8.03 -52.48 -0.42 1.19 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -29.74 379.10 -8.79 -38.54 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.86 Total: 6.63 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: -1.48 Total: -24.18 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.23 Total: -32.77 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.38 Total: -9.38 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.74 -8.79 -38.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224742811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.100 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds