Wall clock time and date at job start Tue Mar 31 2020 12:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47465 * 2 1 4 4 N 1.46900 * 109.46909 * 120.00187 * 2 1 3 5 5 C 1.46903 * 111.00068 * 274.99832 * 4 2 1 6 6 C 1.53000 * 109.46941 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.54276 * 300.17516 * 6 5 4 8 8 C 1.53179 * 109.61950 * 60.38801 * 6 5 4 9 9 C 1.53089 * 109.16199 * 176.88305 * 8 6 5 10 10 O 1.42904 * 109.42216 * 302.40419 * 9 8 6 11 11 C 1.42903 * 114.09797 * 61.15831 * 10 9 8 12 12 C 1.53098 * 109.41089 * 298.83864 * 11 10 9 13 13 C 1.50700 * 109.46845 * 240.00031 * 2 1 3 14 14 C 1.38299 * 119.93196 * 279.72450 * 13 2 1 15 15 C 1.38106 * 120.07055 * 179.72307 * 14 13 2 16 16 C 1.38885 * 119.92497 * 0.55560 * 15 14 13 17 17 O 1.35746 * 120.06502 * 179.74191 * 16 15 14 18 18 C 1.34828 * 117.00150 * 174.43740 * 17 16 15 19 19 H 1.07999 * 119.99675 * 5.06448 * 18 17 16 20 20 C 1.38649 * 120.00592 * 185.05617 * 18 17 16 21 21 N 1.31560 * 119.99496 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00379 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47650 * 89.99796 * 22 20 18 24 24 H 1.48500 * 109.47461 * 210.00241 * 22 20 18 25 25 H 1.48507 * 109.47053 * 329.99799 * 22 20 18 26 26 C 1.38881 * 119.86428 * 359.72169 * 16 15 14 27 27 C 1.38096 * 119.92808 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.46940 * 299.99910 * 1 2 3 29 29 H 1.09007 * 109.47187 * 59.99713 * 1 2 3 30 30 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 31 31 H 1.00904 * 111.00220 * 151.04042 * 4 2 1 32 32 H 1.08998 * 109.46785 * 60.00308 * 5 4 2 33 33 H 1.08995 * 109.46947 * 299.99952 * 5 4 2 34 34 H 1.08994 * 109.46991 * 299.82554 * 7 6 5 35 35 H 1.08999 * 109.46922 * 59.82443 * 7 6 5 36 36 H 1.08998 * 109.47020 * 179.82073 * 7 6 5 37 37 H 1.08993 * 109.51670 * 56.97411 * 8 6 5 38 38 H 1.09004 * 109.52804 * 296.79143 * 8 6 5 39 39 H 1.09006 * 109.47956 * 182.42010 * 9 8 6 40 40 H 1.08996 * 109.48601 * 62.39270 * 9 8 6 41 41 H 1.08998 * 109.48355 * 58.81987 * 11 10 9 42 42 H 1.08997 * 109.48203 * 178.85062 * 11 10 9 43 43 H 1.09003 * 109.51818 * 177.51412 * 12 11 10 44 44 H 1.08996 * 109.52568 * 297.63881 * 12 11 10 45 45 H 1.07997 * 119.96619 * 0.02562 * 14 13 2 46 46 H 1.07989 * 120.03522 * 180.27671 * 15 14 13 47 47 H 0.97008 * 119.99281 * 179.97438 * 21 20 18 48 48 H 1.07997 * 120.03190 * 179.97438 * 26 16 15 49 49 H 1.08004 * 119.96101 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5330 3.5742 7 6 1.6506 -1.6926 3.8942 8 6 3.9991 -1.0792 3.2918 9 6 4.5341 -1.7654 4.5514 10 8 4.5405 -0.8328 5.6342 11 6 3.2489 -0.3246 5.9742 12 6 2.6623 0.4197 4.7718 13 6 2.0323 -0.7104 -1.2305 14 6 2.0714 -2.0925 -1.2617 15 6 2.5258 -2.7466 -2.3900 16 6 2.9545 -2.0147 -3.4897 17 8 3.4066 -2.6546 -4.5982 18 6 3.6984 -1.8904 -5.6700 19 1 3.6473 -0.8142 -5.5958 20 6 4.0641 -2.4861 -6.8674 21 7 4.1260 -3.7971 -6.9579 22 14 4.4690 -1.4272 -8.3521 23 1 5.9197 -1.1102 -8.3533 24 1 4.1220 -2.1631 -9.5944 25 1 3.6868 -0.1664 -8.2890 26 6 2.9194 -0.6268 -3.4531 27 6 2.4590 0.0212 -2.3238 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.9172 -1.1207 1.0287 32 1 1.0870 0.6162 2.5525 33 1 2.7588 1.0460 2.1183 34 1 0.6545 -1.3022 4.1025 35 1 1.6044 -2.3697 3.0413 36 1 2.0194 -2.2319 4.7666 37 1 4.6606 -0.2583 3.0153 38 1 3.9519 -1.8007 2.4761 39 1 5.5493 -2.1184 4.3697 40 1 3.8949 -2.6113 4.8040 41 1 2.5926 -1.1516 6.2453 42 1 3.3381 0.3602 6.8175 43 1 1.6591 0.7701 5.0144 44 1 3.2962 1.2716 4.5261 45 1 1.7417 -2.6610 -0.4047 46 1 2.5519 -3.8259 -2.4154 47 1 4.3815 -4.2138 -7.7958 48 1 3.2525 -0.0550 -4.3065 49 1 2.4311 1.1005 -2.2949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224742811.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:26 Heat of formation + Delta-G solvation = -80.164192 kcal Electronic energy + Delta-G solvation = -26901.964342 eV Core-core repulsion = 23214.256964 eV Total energy + Delta-G solvation = -3687.707379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07870 -40.74213 -39.01615 -37.38347 -35.46313 -34.22600 -32.12049 -31.85256 -31.39382 -29.34651 -28.60932 -27.37844 -26.90695 -24.55791 -23.99499 -23.71796 -22.70952 -21.29378 -19.76142 -19.46556 -18.84808 -17.51795 -16.94365 -16.69253 -16.57306 -16.30071 -16.01024 -15.77234 -15.56571 -15.50215 -15.18676 -15.08496 -14.70636 -14.40683 -14.24276 -14.00644 -13.79663 -13.50489 -13.29333 -13.17578 -12.95101 -12.82432 -12.75235 -12.49776 -12.43390 -12.20643 -12.17830 -12.13204 -12.02035 -11.87223 -11.64553 -11.18460 -11.16908 -11.04814 -10.79169 -10.29896 -9.77417 -9.28614 -8.91015 -8.47749 -6.15814 0.60217 0.68675 1.34170 1.43329 1.51602 2.17020 2.80985 3.00673 3.13831 3.25853 3.52722 3.73233 3.80093 3.91511 3.93642 4.10134 4.15601 4.22829 4.31717 4.36499 4.41507 4.46408 4.58497 4.61432 4.72255 4.73386 4.75959 4.77456 4.82210 4.88897 4.90938 4.97240 5.01010 5.05555 5.13032 5.14823 5.16372 5.21648 5.27598 5.29722 5.38869 5.47067 5.58005 5.63684 5.71466 5.73599 6.02615 6.20375 6.26226 6.31328 6.49858 6.97103 7.78453 8.75522 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023258 B = 0.002360 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.573795 B =11860.227690 C =12312.886465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 H 0.050 0.950 4 N -0.679 5.679 5 C 0.074 3.926 6 C -0.055 4.055 7 C -0.132 4.132 8 C -0.147 4.147 9 C 0.059 3.941 10 O -0.406 6.406 11 C 0.056 3.944 12 C -0.141 4.141 13 C -0.163 4.163 14 C -0.044 4.044 15 C -0.205 4.205 16 C 0.114 3.886 17 O -0.233 6.233 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.254 1.254 26 C -0.243 4.243 27 C -0.065 4.065 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.341 0.659 32 H 0.079 0.921 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.147 0.853 46 H 0.111 0.889 47 H 0.272 0.728 48 H 0.117 0.883 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 9.912 23.898 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.037 3.963 3 H 0.068 0.932 4 N -0.311 5.311 5 C -0.055 4.055 6 C -0.055 4.055 7 C -0.189 4.189 8 C -0.185 4.185 9 C -0.018 4.018 10 O -0.326 6.326 11 C -0.021 4.021 12 C -0.179 4.179 13 C -0.164 4.164 14 C -0.062 4.062 15 C -0.224 4.224 16 C 0.063 3.937 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.177 1.177 26 C -0.262 4.262 27 C -0.083 4.083 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.164 0.836 46 H 0.129 0.871 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.537 9.332 23.975 26.316 hybrid contribution 0.963 0.490 -1.615 1.943 sum -4.573 9.822 22.360 24.847 Atomic orbital electron populations 1.21723 0.93445 1.02089 1.01300 1.20144 0.95853 0.94465 0.85834 0.93230 1.60650 1.33511 1.33024 1.03953 1.22017 1.00608 0.93042 0.89844 1.20549 0.94634 0.96077 0.94283 1.21797 0.98394 0.97401 1.01288 1.22233 0.96460 1.01016 0.98755 1.22654 1.02170 0.91125 0.85808 1.87897 1.30420 1.61878 1.52360 1.22740 0.84225 0.98016 0.97078 1.22192 1.02435 0.98247 0.95037 1.19758 1.06366 0.93520 0.96802 1.20756 0.95623 0.94075 0.95784 1.20490 1.08608 0.99491 0.93813 1.19959 0.92906 0.92430 0.88363 1.83942 1.73683 1.36754 1.19569 1.21799 1.47676 0.91397 0.88033 0.88208 1.26585 0.96444 0.97787 1.01282 1.70190 1.46830 1.10891 1.27994 0.84594 0.79197 0.77400 0.75067 1.18792 1.19568 1.17716 1.21207 1.10324 0.93518 1.01130 1.20929 0.95810 0.99852 0.91745 0.91545 0.92953 0.92738 0.83962 0.90273 0.95802 0.92360 0.92029 0.92917 0.92328 0.90509 0.88817 0.92156 0.92185 0.88019 0.89376 0.91825 0.83560 0.87085 0.91850 0.86548 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.39 71.98 0.68 -1.95 16 2 C 0.15 3.26 2.82 44.17 0.12 3.38 16 3 H 0.05 1.06 7.66 -2.39 -0.02 1.04 16 4 N -0.68 -13.13 4.89 -495.45 -2.43 -15.56 16 5 C 0.07 1.18 4.46 86.30 0.38 1.57 16 6 C -0.06 -0.79 0.60 -52.06 -0.03 -0.82 16 7 C -0.13 -1.85 7.77 71.98 0.56 -1.29 16 8 C -0.15 -2.39 4.51 30.68 0.14 -2.26 16 9 C 0.06 0.95 6.57 72.01 0.47 1.42 16 10 O -0.41 -7.62 10.77 -148.98 -1.60 -9.23 16 11 C 0.06 0.74 6.57 72.01 0.47 1.21 16 12 C -0.14 -1.78 4.92 30.69 0.15 -1.63 16 13 C -0.16 -4.90 4.72 -19.83 -0.09 -5.00 16 14 C -0.04 -1.45 8.99 22.25 0.20 -1.25 16 15 C -0.20 -8.67 9.99 22.39 0.22 -8.45 16 16 C 0.11 5.66 6.65 22.58 0.15 5.81 16 17 O -0.23 -14.09 9.76 -22.68 -0.22 -14.32 16 18 C -0.41 -24.18 9.49 67.92 0.64 -23.53 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 20 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 21 N -0.92 -56.83 13.67 21.61 0.30 -56.53 16 22 Si 1.02 43.02 29.55 68.60 2.03 45.05 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 26 C -0.24 -10.52 9.17 22.39 0.21 -10.31 16 27 C -0.06 -2.20 9.66 22.25 0.21 -1.98 16 28 H 0.07 1.12 7.45 -2.39 -0.02 1.11 16 29 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.34 7.19 6.12 -89.69 -0.55 6.64 16 32 H 0.08 1.18 7.44 -2.39 -0.02 1.16 16 33 H 0.02 0.41 8.05 -2.39 -0.02 0.39 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 1.03 7.60 -2.39 -0.02 1.01 16 36 H 0.05 0.69 5.01 -2.39 -0.01 0.68 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.30 6.76 -2.38 -0.02 1.28 16 39 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.06 0.88 6.60 -2.39 -0.02 0.86 16 41 H 0.06 0.71 6.60 -2.39 -0.02 0.69 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.15 4.03 7.70 -2.91 -0.02 4.01 16 46 H 0.11 4.70 8.06 -2.92 -0.02 4.68 16 47 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 48 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 49 H 0.14 3.74 8.03 -2.91 -0.02 3.71 16 Total: -1.00 -68.70 379.10 3.43 -65.27 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.39 Total: 31.27 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 4.96 Total: -45.95 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.13 Total: -72.09 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.83 Total: -23.54 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -68.70 3.43 -65.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224742811.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.893 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds