Wall clock time and date at job start Tue Mar 31 2020 12:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35995 * 117.00203 * 2 1 4 4 C 1.38568 * 120.06673 * 0.02622 * 3 2 1 5 5 C 1.38245 * 119.99469 * 179.70234 * 4 3 2 6 6 C 1.38254 * 120.14691 * 0.54760 * 5 4 3 7 7 C 1.50696 * 119.92442 * 179.72598 * 6 5 4 8 8 N 1.46899 * 109.47309 * 269.72572 * 7 6 5 9 9 C 1.46901 * 111.00306 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.46758 * 324.99744 * 9 8 7 11 11 C 1.52995 * 109.47395 * 85.00020 * 9 8 7 12 12 C 1.52996 * 109.47117 * 205.00252 * 9 8 7 13 13 C 1.53000 * 117.49997 * 179.97438 * 12 9 8 14 14 C 1.53002 * 60.02940 * 252.49592 * 13 12 9 15 15 C 1.38238 * 120.14481 * 359.45034 * 6 5 4 16 16 C 1.38566 * 120.00289 * 0.27864 * 15 6 5 17 17 O 1.35990 * 120.07614 * 179.97438 * 16 15 6 18 18 C 1.42903 * 116.99772 * 359.97438 * 17 16 15 19 19 C 1.53001 * 109.46912 * 179.97438 * 18 17 16 20 20 C 1.50693 * 109.47181 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00305 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00236 * 180.02562 * 20 19 18 23 23 N 1.31505 * 119.99833 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47431 * 60.00154 * 24 22 20 26 26 H 1.48509 * 109.46850 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47397 * 299.99499 * 24 22 20 28 28 H 1.09006 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47369 * 299.99155 * 1 2 3 30 30 H 1.09003 * 109.47441 * 59.99743 * 1 2 3 31 31 H 1.07997 * 120.00341 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.92608 * 180.29375 * 5 4 3 33 33 H 1.09006 * 109.47273 * 149.72862 * 7 6 5 34 34 H 1.09004 * 109.47636 * 29.72823 * 7 6 5 35 35 H 1.00899 * 110.99877 * 56.04448 * 8 7 6 36 36 H 1.08995 * 109.47239 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.46923 * 300.00307 * 11 9 8 38 38 H 1.08994 * 109.47220 * 59.99650 * 11 9 8 39 39 H 1.09007 * 115.55004 * 325.66614 * 12 9 8 40 40 H 1.09002 * 117.49833 * 359.97438 * 13 12 9 41 41 H 1.09002 * 117.49953 * 144.99738 * 13 12 9 42 42 H 1.09000 * 117.49996 * 107.50493 * 14 13 12 43 43 H 1.08999 * 117.49664 * 252.51862 * 14 13 12 44 44 H 1.07999 * 119.99938 * 180.25336 * 15 6 5 45 45 H 1.08995 * 109.46923 * 299.99345 * 18 17 16 46 46 H 1.08998 * 109.47602 * 60.00210 * 18 17 16 47 47 H 1.09004 * 109.47376 * 300.00069 * 19 18 17 48 48 H 1.09001 * 109.47251 * 59.99866 * 19 18 17 49 49 H 0.97006 * 120.00285 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3747 0.0005 5 6 1.9223 3.6057 0.0068 6 6 3.3028 3.6799 0.0010 7 6 3.9835 5.0243 0.0016 8 7 4.2046 5.4619 -1.3832 9 6 4.8684 6.7718 -1.4218 10 1 4.5170 7.3818 -0.5897 11 6 6.3822 6.5800 -1.3101 12 6 4.5390 7.4717 -2.7419 13 6 5.1402 8.8592 -2.9750 14 6 3.6459 8.7133 -2.6803 15 6 4.0602 2.5234 0.0005 16 6 3.4359 1.2863 -0.0001 17 8 4.1795 0.1477 -0.0011 18 6 5.6003 0.3008 -0.0021 19 6 6.2618 -1.0788 -0.0026 20 6 7.7601 -0.9175 -0.0042 21 1 8.1969 0.0703 -0.0054 22 6 8.5734 -2.0309 -0.0054 23 7 8.0416 -3.2336 -0.0046 24 14 10.4306 -1.8308 -0.0068 25 1 10.8488 -1.0824 1.2057 26 1 11.0727 -3.1699 -0.0086 27 1 10.8469 -1.0812 -1.2194 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2145 2.3196 0.0014 32 1 1.3341 4.5114 0.0120 33 1 4.9417 4.9463 0.5153 34 1 3.3536 5.7503 0.5158 35 1 3.3379 5.4800 -1.8994 36 1 6.8746 7.5519 -1.3384 37 1 6.6168 6.0813 -0.3696 38 1 6.7335 5.9699 -2.1422 39 1 4.4323 6.8173 -3.6071 40 1 5.7700 9.2736 -2.1878 41 1 5.4294 9.1177 -3.9937 42 1 3.2929 9.0316 -1.6994 43 1 2.9521 8.8755 -3.5052 44 1 5.1385 2.5841 0.0001 45 1 5.9058 0.8508 -0.8921 46 1 5.9073 0.8502 0.8878 47 1 5.9562 -1.6287 0.8877 48 1 5.9550 -1.6287 -0.8923 49 1 8.6138 -4.0170 -0.0051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237256919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:36 Heat of formation + Delta-G solvation = -36.854790 kcal Electronic energy + Delta-G solvation = -26257.141467 eV Core-core repulsion = 22571.312124 eV Total energy + Delta-G solvation = -3685.829342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.30955 -38.77869 -38.09293 -37.11577 -35.06651 -33.31101 -31.42638 -30.55785 -29.58810 -28.90899 -27.29481 -25.41997 -24.93061 -23.10798 -22.61261 -22.37923 -21.08809 -20.48334 -20.19265 -18.21260 -17.04600 -16.73615 -16.27395 -15.92618 -15.79430 -15.45363 -14.93105 -14.78922 -14.56400 -14.41774 -14.38058 -14.04498 -13.80673 -13.15340 -13.13028 -12.64820 -12.36132 -12.26659 -12.24130 -12.02989 -11.88825 -11.72925 -11.45965 -11.33793 -11.08613 -10.95952 -10.90000 -10.82414 -10.74980 -10.59964 -10.49178 -10.30255 -9.76701 -9.59384 -9.24140 -8.59523 -8.47326 -8.38488 -7.46278 -6.04147 -4.08526 1.44689 1.60717 3.32882 3.36854 3.38856 3.42577 3.45185 3.73946 3.86541 4.13316 4.39549 4.45682 4.58853 4.72501 4.80888 4.85068 5.01065 5.05550 5.10762 5.18225 5.19146 5.24653 5.28929 5.32002 5.39689 5.46609 5.51289 5.53665 5.60097 5.62048 5.67556 5.76873 5.82699 5.88393 5.91520 6.11625 6.13554 6.19340 6.35298 6.35963 6.65777 6.77208 6.86514 6.92961 7.25500 7.36962 7.61865 7.72949 7.89810 8.16808 8.31154 8.97034 9.55221 11.07456 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.003323 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3507.159837 B = 8423.808793 C =11630.512814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.090 3.910 4 C -0.175 4.175 5 C -0.126 4.126 6 C -0.082 4.082 7 C 0.106 3.894 8 N -0.677 5.677 9 C 0.115 3.885 10 H 0.042 0.958 11 C -0.140 4.140 12 C -0.154 4.154 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.155 4.155 16 C 0.119 3.881 17 O -0.305 6.305 18 C 0.065 3.935 19 C 0.027 3.973 20 C -0.525 4.525 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.343 0.657 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.027 0.973 48 H 0.028 0.972 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.065 21.850 -2.269 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.044 3.956 4 C -0.194 4.194 5 C -0.145 4.145 6 C -0.083 4.083 7 C -0.023 4.023 8 N -0.308 5.308 9 C 0.006 3.994 10 H 0.059 0.941 11 C -0.198 4.198 12 C -0.173 4.173 13 C -0.210 4.210 14 C -0.222 4.222 15 C -0.174 4.174 16 C 0.072 3.928 17 O -0.218 6.218 18 C -0.009 4.009 19 C -0.010 4.010 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.135 0.865 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.162 0.838 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.156 0.844 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.385 20.895 -2.330 24.924 hybrid contribution 0.134 0.915 0.220 0.951 sum -13.251 21.811 -2.110 25.607 Atomic orbital electron populations 1.23006 0.79307 1.03702 1.00697 1.86246 1.20351 1.26000 1.89008 1.18346 0.89469 0.85033 1.02745 1.20892 0.99404 0.91534 1.07566 1.20543 0.93650 0.96642 1.03667 1.19332 0.92917 0.94117 1.01901 1.20834 0.99593 0.92249 0.89604 1.60539 1.29668 1.27363 1.13262 1.21079 0.95659 0.88555 0.94109 0.94059 1.21780 0.94071 1.01245 1.02671 1.22485 1.04635 0.90486 0.99685 1.22907 0.95893 0.99429 1.02788 1.23064 0.93673 1.02496 1.02942 1.21018 1.00781 0.90311 1.05304 1.18458 0.88477 0.87157 0.98728 1.86278 1.20991 1.27271 1.87247 1.23330 0.74894 1.03172 0.99548 1.19098 0.94105 0.88972 0.98868 1.20947 0.90379 0.92873 1.52162 0.92414 1.24984 0.99069 0.95133 0.94989 1.69970 1.35497 0.97594 1.49746 0.86561 0.84915 0.77258 0.78710 1.20113 1.21167 1.20081 0.88440 0.93096 0.93081 0.85332 0.86497 0.90133 0.94602 0.83809 0.92718 0.92599 0.91602 0.86993 0.88716 0.88705 0.89028 0.88836 0.84421 0.93083 0.93294 0.95436 0.95405 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.06 10.28 -34.23 -0.35 -5.41 16 3 C 0.09 1.49 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.27 9.04 -39.46 -0.36 -2.63 16 5 C -0.13 -1.51 9.69 -39.57 -0.38 -1.90 16 6 C -0.08 -1.08 5.39 -104.62 -0.56 -1.65 16 7 C 0.11 1.15 5.61 -4.98 -0.03 1.12 16 8 N -0.68 -7.09 6.30 -108.00 -0.68 -7.77 16 9 C 0.12 1.04 2.85 -67.72 -0.19 0.85 16 10 H 0.04 0.36 7.56 -51.93 -0.39 -0.03 16 11 C -0.14 -1.34 9.25 37.15 0.34 -1.00 16 12 C -0.15 -1.24 5.11 -90.59 -0.46 -1.70 16 13 C -0.17 -1.20 9.73 -26.73 -0.26 -1.46 16 14 C -0.18 -1.26 10.18 -26.69 -0.27 -1.53 16 15 C -0.15 -2.51 8.69 -39.46 -0.34 -2.85 16 16 C 0.12 2.23 6.70 -39.12 -0.26 1.96 16 17 O -0.30 -6.77 9.92 -34.21 -0.34 -7.11 16 18 C 0.06 1.45 4.68 37.16 0.17 1.63 16 19 C 0.03 0.73 5.34 -27.89 -0.15 0.58 16 20 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 21 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 24 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 31 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.08 0.91 7.38 -51.93 -0.38 0.53 16 34 H 0.04 0.34 8.00 -51.93 -0.42 -0.07 16 35 H 0.34 3.38 8.35 -39.29 -0.33 3.05 16 36 H 0.05 0.45 7.29 -51.93 -0.38 0.07 16 37 H 0.05 0.56 7.45 -51.93 -0.39 0.18 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.63 7.61 -51.93 -0.40 0.23 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.14 2.25 6.30 -52.49 -0.33 1.92 16 45 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 46 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 400.03 15.07 6.03 6.03 Total: -1.00 -32.02 400.03 -10.34 -42.36 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.27 Total: 1.27 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.44 Total: -19.70 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.06 Total: -34.04 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.69 Total: -12.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.02 -10.34 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237256919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.506 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds