Wall clock time and date at job start Tue Mar 31 2020 13:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47050 * 2 1 4 4 C 1.50693 * 109.47179 * 239.99555 * 2 1 3 5 5 H 1.08008 * 120.00291 * 240.00391 * 4 2 1 6 6 C 1.37877 * 120.00455 * 60.00038 * 4 2 1 7 7 N 1.31519 * 119.99506 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00664 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47080 * 59.99760 * 8 6 4 10 10 H 1.48496 * 109.47557 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46913 * 299.99886 * 8 6 4 12 12 N 1.46499 * 109.46682 * 119.99728 * 2 1 3 13 13 C 1.46499 * 120.00136 * 60.00157 * 12 2 1 14 14 C 1.34784 * 119.99893 * 239.99962 * 12 2 1 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 12 2 17 17 O 1.42905 * 109.47007 * 179.97438 * 16 14 12 18 18 C 1.35894 * 117.00317 * 179.97438 * 17 16 14 19 19 C 1.38756 * 120.05156 * 359.72325 * 18 17 16 20 20 C 1.38133 * 119.93901 * 179.70203 * 19 18 17 21 21 C 1.38286 * 120.05645 * 0.59338 * 20 19 18 22 22 C 1.38248 * 120.10887 * 359.68415 * 21 20 19 23 23 C 1.38163 * 120.05774 * 0.02562 * 22 21 20 24 24 C 1.50696 * 120.02657 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47290 * 0.02562 * 24 23 22 26 26 C 1.53001 * 109.46989 * 120.02191 * 24 23 22 27 27 C 1.52999 * 109.47214 * 240.02094 * 24 23 22 28 28 H 1.08998 * 109.46818 * 60.00570 * 1 2 3 29 29 H 1.09001 * 109.46881 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47077 * 300.00554 * 1 2 3 31 31 H 0.96994 * 120.00081 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47256 * 269.99572 * 13 12 2 33 33 H 1.08998 * 109.47416 * 29.99674 * 13 12 2 34 34 H 1.09008 * 109.47058 * 150.00274 * 13 12 2 35 35 H 1.09001 * 109.46809 * 299.99238 * 16 14 12 36 36 H 1.08993 * 109.47525 * 59.99679 * 16 14 12 37 37 H 1.07993 * 120.03389 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.96929 * 180.29969 * 20 19 18 39 39 H 1.07999 * 119.94618 * 179.69921 * 21 20 19 40 40 H 1.08002 * 119.96969 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47082 * 59.99919 * 25 24 23 42 42 H 1.09003 * 109.46963 * 179.97438 * 25 24 23 43 43 H 1.09001 * 109.47227 * 299.99775 * 25 24 23 44 44 H 1.08999 * 109.47318 * 59.99892 * 26 24 23 45 45 H 1.09003 * 109.47250 * 179.97438 * 26 24 23 46 46 H 1.08996 * 109.47170 * 299.99950 * 26 24 23 47 47 H 1.09001 * 109.47101 * 60.00349 * 27 24 23 48 48 H 1.09003 * 109.47280 * 180.02562 * 27 24 23 49 49 H 1.08999 * 109.47425 * 300.00309 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8270 -0.4203 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0355 2.0834 15 8 3.0857 1.1258 1.8916 16 6 3.2903 -0.7441 3.3170 17 8 4.0857 0.1536 4.0940 18 6 4.6141 -0.3314 5.2482 19 6 4.3673 -1.6429 5.6282 20 6 4.9106 -2.1353 6.7989 21 6 5.6898 -1.3188 7.5979 22 6 5.9324 -0.0101 7.2243 23 6 5.3962 0.4854 6.0514 24 6 5.6606 1.9123 5.6450 25 6 6.5436 2.5869 6.6968 26 6 6.3735 1.9333 4.2914 27 6 4.3334 2.6654 5.5343 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7090 1.1611 -3.4844 32 1 0.7375 -2.1443 1.9994 33 1 1.5294 -2.5969 0.4710 34 1 2.4628 -2.5818 1.9866 35 1 2.4400 -1.0822 3.9093 36 1 3.8937 -1.6032 3.0242 37 1 3.7545 -2.2794 5.0072 38 1 4.7228 -3.1575 7.0927 39 1 6.1098 -1.7043 8.5153 40 1 6.5410 0.6257 7.8503 41 1 7.4891 2.0504 6.7757 42 1 6.7352 3.6188 6.4027 43 1 6.0358 2.5719 7.6612 44 1 5.7445 1.4528 3.5420 45 1 6.5644 2.9654 3.9972 46 1 7.3190 1.3969 4.3703 47 1 3.8256 2.6504 6.4986 48 1 4.5247 3.6973 5.2399 49 1 3.7044 2.1848 4.7849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264028046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:34 Heat of formation + Delta-G solvation = -54.062755 kcal Electronic energy + Delta-G solvation = -27758.308304 eV Core-core repulsion = 24071.732769 eV Total energy + Delta-G solvation = -3686.575536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65897 -39.12445 -37.43093 -36.24774 -35.31706 -32.94914 -30.48634 -30.34790 -29.49676 -27.72383 -27.08923 -27.00153 -26.13300 -25.24760 -23.06415 -22.26453 -21.01678 -19.50827 -18.43633 -18.02234 -16.71707 -16.30923 -16.02783 -15.96464 -15.58032 -15.13584 -14.47798 -14.33710 -14.31318 -14.17605 -14.02782 -13.46323 -13.20297 -12.82755 -12.58541 -12.46134 -12.23055 -12.03680 -11.94315 -11.92698 -11.71026 -11.55247 -11.50827 -11.44654 -11.10030 -10.94607 -10.84108 -10.82813 -10.73610 -10.60876 -10.35223 -10.29254 -10.20070 -9.24994 -8.98963 -8.91481 -8.45822 -8.12098 -7.68713 -6.10761 -4.19315 1.26220 1.40240 2.93283 3.21937 3.26001 3.31397 3.33716 3.70050 4.07972 4.37161 4.55809 4.71742 4.82865 4.97492 5.04250 5.08384 5.08905 5.19273 5.20400 5.21348 5.36479 5.42597 5.56334 5.62157 5.64902 5.75593 5.89206 5.92647 5.94927 5.96152 6.05694 6.14480 6.17204 6.27351 6.36705 6.37283 6.49491 6.57562 6.63807 6.70996 6.78108 6.81289 7.01024 7.29565 7.42724 7.50508 7.66615 7.96872 8.14354 8.42130 8.77203 8.94941 9.47120 10.94617 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.003092 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.583888 B = 9053.216763 C = 9621.383336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.079 3.921 14 C 0.506 3.494 15 O -0.528 6.528 16 C 0.038 3.962 17 O -0.277 6.277 18 C 0.138 3.862 19 C -0.211 4.211 20 C -0.087 4.087 21 C -0.162 4.162 22 C -0.087 4.087 23 C -0.099 4.099 24 C -0.018 4.018 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.094 0.906 29 H 0.030 0.970 30 H 0.011 0.989 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.054 0.946 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -4.735 19.310 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.323 5.323 13 C -0.065 4.065 14 C 0.291 3.709 15 O -0.404 6.404 16 C -0.041 4.041 17 O -0.189 6.189 18 C 0.092 3.908 19 C -0.230 4.230 20 C -0.105 4.105 21 C -0.180 4.180 22 C -0.104 4.104 23 C -0.100 4.100 24 C -0.018 4.018 25 C -0.200 4.200 26 C -0.199 4.199 27 C -0.199 4.199 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.098 -3.783 18.935 20.573 hybrid contribution 0.149 -1.056 -0.816 1.343 sum 7.247 -4.839 18.120 20.106 Atomic orbital electron populations 1.22090 0.98038 0.99454 1.00907 1.18968 0.90909 0.94557 0.79480 0.91762 1.21265 1.32093 1.13143 0.90268 0.92251 1.24889 0.94880 0.94957 0.98972 1.69867 1.36146 1.22483 1.23968 0.86540 0.79276 0.79538 0.81946 1.20216 1.21129 1.20204 1.48187 1.48937 1.11691 1.23438 1.21666 0.98778 0.83227 1.02783 1.19773 0.80076 0.87345 0.83720 1.90698 1.57144 1.16504 1.76079 1.22692 0.95516 0.93159 0.92697 1.86259 1.63224 1.38396 1.31058 1.18939 0.93533 0.92002 0.86329 1.21271 1.06201 0.95235 1.00255 1.20889 0.96357 0.99424 0.93807 1.21000 1.01871 0.94407 1.00732 1.21000 0.98697 0.95475 0.95278 1.19288 0.99890 0.95821 0.94987 1.19331 0.96302 0.90275 0.95863 1.21983 0.99175 1.00464 0.98375 1.21912 0.99920 1.01804 0.96305 1.21908 0.96217 0.99811 1.01959 0.88732 0.95110 0.96957 0.92545 0.93583 0.89648 0.93042 0.89763 0.89659 0.85493 0.86092 0.86247 0.85180 0.92580 0.92357 0.92589 0.90316 0.92659 0.93430 0.93456 0.92663 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.26 6.54 2.64 -69.09 -0.18 6.36 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.04 7.99 -34.44 -0.28 -14.32 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.59 -12.19 2.75 -175.27 -0.48 -12.67 16 13 C 0.08 1.25 9.23 59.85 0.55 1.80 16 14 C 0.51 10.34 7.75 -10.98 -0.09 10.25 16 15 O -0.53 -13.07 15.83 -14.35 -0.23 -13.29 16 16 C 0.04 0.57 3.78 36.00 0.14 0.71 16 17 O -0.28 -4.45 5.34 -39.31 -0.21 -4.66 16 18 C 0.14 1.91 6.28 -39.22 -0.25 1.66 16 19 C -0.21 -2.47 9.04 -39.43 -0.36 -2.83 16 20 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 21 C -0.16 -1.59 10.04 -39.56 -0.40 -1.99 16 22 C -0.09 -0.93 8.97 -39.61 -0.36 -1.28 16 23 C -0.10 -1.27 4.77 -104.48 -0.50 -1.77 16 24 C -0.02 -0.22 0.75 -155.66 -0.12 -0.34 16 25 C -0.14 -1.39 7.13 37.16 0.27 -1.13 16 26 C -0.14 -1.97 8.26 37.16 0.31 -1.66 16 27 C -0.14 -1.92 8.26 37.16 0.31 -1.62 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 34 H 0.05 0.63 6.44 -51.92 -0.33 0.30 16 35 H 0.08 1.05 7.62 -51.93 -0.40 0.66 16 36 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 37 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.12 5.89 -52.49 -0.31 0.82 16 41 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 44 H 0.08 1.32 6.14 -51.93 -0.32 1.00 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 1.28 6.14 -51.93 -0.32 0.96 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -31.04 382.19 -8.57 -39.61 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -7.91 Total: 2.58 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.10 Total: -8.86 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.15 Total: -36.90 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.44 Total: -17.96 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.04 -8.57 -39.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264028046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.452 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds