Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99736 * 3 2 1 5 5 C 1.53000 * 109.47472 * 270.00332 * 3 2 1 6 6 C 1.53002 * 109.46983 * 299.99737 * 5 3 2 7 7 C 1.52997 * 109.47092 * 300.00290 * 6 5 3 8 8 C 1.53000 * 109.47444 * 59.99992 * 7 6 5 9 9 C 1.52998 * 109.46800 * 299.99769 * 8 7 6 10 10 H 1.09001 * 109.47607 * 300.00271 * 9 8 7 11 11 N 1.46896 * 109.47073 * 179.97438 * 9 8 7 12 12 C 1.46905 * 111.00243 * 85.00487 * 11 9 8 13 13 H 1.09005 * 109.46511 * 324.99748 * 12 11 9 14 14 C 1.52996 * 109.47203 * 84.99373 * 12 11 9 15 15 C 1.50698 * 109.47282 * 205.00193 * 12 11 9 16 16 C 1.38297 * 119.93202 * 139.99502 * 15 12 11 17 17 C 1.38101 * 120.07230 * 180.02562 * 16 15 12 18 18 C 1.38886 * 119.92536 * 359.97438 * 17 16 15 19 19 O 1.35750 * 120.06440 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53777 * 19 18 17 21 21 H 1.07993 * 120.00518 * 354.94289 * 20 19 18 22 22 C 1.38663 * 119.99751 * 174.94575 * 20 19 18 23 23 N 1.31556 * 120.00220 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47264 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47375 * 119.99795 * 24 22 20 27 27 H 1.48506 * 109.47301 * 239.99793 * 24 22 20 28 28 C 1.38874 * 119.86623 * 0.27854 * 18 17 16 29 29 C 1.38110 * 119.92772 * 359.48927 * 28 18 17 30 30 H 1.09000 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47088 * 299.99835 * 1 2 3 32 32 H 1.09001 * 109.47244 * 59.99877 * 1 2 3 33 33 H 1.08996 * 109.47417 * 59.99634 * 5 3 2 34 34 H 1.08992 * 109.47216 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46903 * 59.99804 * 6 5 3 36 36 H 1.08997 * 109.47605 * 179.97438 * 6 5 3 37 37 H 1.09010 * 109.47256 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47383 * 299.99276 * 7 6 5 39 39 H 1.09001 * 109.46984 * 180.02562 * 8 7 6 40 40 H 1.08992 * 109.47216 * 59.99627 * 8 7 6 41 41 H 1.00896 * 111.00459 * 321.04292 * 11 9 8 42 42 H 1.09005 * 109.47081 * 60.00724 * 14 12 11 43 43 H 1.08999 * 109.46944 * 180.02562 * 14 12 11 44 44 H 1.08999 * 109.47872 * 300.00805 * 14 12 11 45 45 H 1.07999 * 119.96698 * 0.02562 * 16 15 12 46 46 H 1.07992 * 120.03608 * 179.97438 * 17 16 15 47 47 H 0.96996 * 120.00178 * 179.97438 * 23 22 20 48 48 H 1.07996 * 120.03745 * 179.72497 * 28 18 17 49 49 H 1.07996 * 119.96227 * 180.23396 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 3.1515 0.7975 -2.1638 7 6 4.5001 0.7553 -1.4425 8 6 4.2927 0.2892 0.0000 9 6 3.3589 1.2632 0.7212 10 1 3.8022 2.2590 0.7213 11 7 3.1593 0.8155 2.1060 12 6 4.2371 1.3024 2.9773 13 1 5.1748 1.3171 2.4217 14 6 3.9060 2.7172 3.4563 15 6 4.3728 0.3880 4.1675 16 6 5.6282 0.0590 4.6454 17 6 5.7559 -0.7791 5.7355 18 6 4.6218 -1.2915 6.3522 19 8 4.7440 -2.1152 7.4243 20 6 5.9867 -2.3053 7.9116 21 1 6.8378 -1.8782 7.4022 22 6 6.1720 -3.0492 9.0671 23 7 5.1352 -3.5691 9.6880 24 14 7.8935 -3.3120 9.7427 25 1 8.8787 -2.6285 8.8667 26 1 7.9777 -2.7509 11.1149 27 1 8.1929 -4.7660 9.7832 28 6 3.3627 -0.9635 5.8667 29 6 3.2416 -0.1209 4.7791 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.2569 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4424 35 1 2.7081 -0.1983 -2.1638 36 1 3.2989 1.1292 -3.1915 37 1 5.1653 0.0610 -1.9561 38 1 4.9435 1.7510 -1.4425 39 1 5.2535 0.2596 0.5139 40 1 3.8494 -0.7064 -0.0001 41 1 3.0819 -0.1893 2.1536 42 1 2.9683 2.7026 4.0120 43 1 4.7059 3.0786 4.1024 44 1 3.8078 3.3787 2.5955 45 1 6.5097 0.4581 4.1657 46 1 6.7365 -1.0359 6.1080 47 1 5.2648 -4.0898 10.4960 48 1 2.4791 -1.3639 6.3413 49 1 2.2626 0.1375 4.4034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271907136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = -65.120747 kcal Electronic energy + Delta-G solvation = -27146.445009 eV Core-core repulsion = 23459.389963 eV Total energy + Delta-G solvation = -3687.055046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.89692 -39.03049 -37.32801 -36.18269 -34.87361 -32.30734 -31.28051 -30.32514 -30.13449 -27.95898 -27.69300 -26.40699 -25.37201 -23.02562 -22.46630 -22.07756 -21.31591 -20.03665 -19.67531 -17.90905 -17.04816 -16.57174 -16.14877 -15.79417 -15.12906 -15.01674 -14.68706 -14.47985 -14.03143 -13.99627 -13.74523 -13.61379 -13.48377 -13.21585 -12.79223 -12.72645 -12.56078 -12.43373 -12.24777 -12.14589 -11.78725 -11.66226 -11.53715 -11.43345 -11.21306 -11.18291 -10.86478 -10.72305 -10.66468 -10.57319 -10.41344 -10.32319 -10.24478 -9.53166 -9.31061 -8.81607 -8.22689 -8.13410 -7.14693 -6.43840 -4.02526 2.25851 2.33893 3.12710 3.14219 3.19710 3.72655 3.97610 4.13946 4.55767 4.59333 4.65596 4.84278 4.99201 5.05242 5.10042 5.13929 5.19173 5.23791 5.28066 5.32168 5.35731 5.40802 5.50207 5.53199 5.60139 5.63860 5.71068 5.72392 5.74930 5.85996 5.91345 5.96187 5.99870 6.04809 6.06686 6.14938 6.26648 6.28382 6.43290 6.50112 6.76633 6.90998 7.07492 7.09505 7.18804 7.31225 7.46115 7.48259 7.64630 7.86631 8.01589 9.02065 9.73090 10.74406 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.002517 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.434404 B =11122.586990 C =11431.975541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.374 6.374 3 C 0.103 3.897 4 H 0.064 0.936 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.146 4.146 9 C 0.094 3.906 10 H 0.083 0.917 11 N -0.676 5.676 12 C 0.141 3.859 13 H 0.041 0.959 14 C -0.132 4.132 15 C -0.190 4.190 16 C -0.066 4.066 17 C -0.235 4.235 18 C 0.155 3.845 19 O -0.179 6.179 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.863 5.863 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.195 4.195 29 C -0.054 4.054 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.352 0.648 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.103 0.897 46 H 0.125 0.875 47 H 0.269 0.731 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 11.004 -21.082 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.292 6.292 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.180 4.180 6 C -0.151 4.151 7 C -0.152 4.152 8 C -0.185 4.185 9 C -0.017 4.017 10 H 0.102 0.898 11 N -0.307 5.307 12 C 0.032 3.968 13 H 0.058 0.942 14 C -0.190 4.190 15 C -0.191 4.191 16 C -0.084 4.084 17 C -0.254 4.254 18 C 0.102 3.898 19 O -0.082 6.082 20 C -0.467 4.467 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.498 5.498 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.202 1.202 28 C -0.214 4.214 29 C -0.073 4.073 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.121 0.879 46 H 0.143 0.857 47 H 0.079 0.921 48 H 0.134 0.866 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.078 11.074 -20.551 23.890 hybrid contribution 1.476 -0.473 0.070 1.551 sum -3.602 10.601 -20.481 23.341 Atomic orbital electron populations 1.22721 0.81680 1.02375 0.99536 1.87902 1.19015 1.27428 1.94865 1.22107 0.94643 0.85045 0.93777 0.91759 1.22044 1.00005 0.99388 0.96555 1.21415 0.95346 1.00302 0.98022 1.21465 0.97051 1.00999 0.95725 1.22195 0.99801 1.00710 0.95768 1.21650 0.93184 0.98642 0.88202 0.89847 1.60643 1.45770 1.18515 1.05772 1.20152 0.91815 0.93841 0.90958 0.94152 1.21786 1.01985 0.95024 1.00195 1.19259 0.93398 1.05447 1.01038 1.20575 0.95796 0.96481 0.95594 1.21112 0.99006 1.04994 1.00291 1.19420 0.93331 0.88947 0.88143 1.83980 1.31619 1.54390 1.38247 1.21366 0.82173 1.34354 1.08827 0.89077 1.25287 0.99635 0.96199 0.95439 1.70047 1.29725 1.32115 1.17927 0.85655 0.80330 0.78474 0.79011 1.19135 1.20147 1.20161 1.20252 0.95261 1.05031 1.00887 1.20491 0.97651 0.95238 0.93890 0.90039 0.93892 0.94829 0.91958 0.91296 0.91238 0.92563 0.92197 0.92384 0.92194 0.90827 0.82796 0.92047 0.92745 0.93714 0.87883 0.85695 0.92095 0.86645 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.37 -4.06 8.86 -35.23 -0.31 -4.37 16 3 C 0.10 0.99 2.57 -26.73 -0.07 0.93 16 4 H 0.06 0.63 7.79 -51.93 -0.40 0.23 16 5 C -0.14 -1.14 5.63 -26.73 -0.15 -1.29 16 6 C -0.11 -0.94 5.78 -26.73 -0.15 -1.09 16 7 C -0.11 -0.99 5.92 -26.73 -0.16 -1.15 16 8 C -0.15 -1.51 5.01 -26.73 -0.13 -1.65 16 9 C 0.09 0.98 2.06 -67.72 -0.14 0.84 16 10 H 0.08 0.84 7.12 -51.93 -0.37 0.47 16 11 N -0.68 -8.37 5.30 -100.95 -0.54 -8.90 16 12 C 0.14 1.90 2.63 -68.86 -0.18 1.72 16 13 H 0.04 0.53 6.97 -51.93 -0.36 0.17 16 14 C -0.13 -1.65 9.38 37.16 0.35 -1.30 16 15 C -0.19 -3.20 4.72 -104.58 -0.49 -3.69 16 16 C -0.07 -1.20 9.66 -39.61 -0.38 -1.59 16 17 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 18 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 19 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 20 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 21 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 24 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16 29 C -0.05 -0.97 9.00 -39.60 -0.36 -1.33 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.03 0.25 7.87 -51.93 -0.41 -0.16 16 33 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.66 7.68 -51.92 -0.40 0.26 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.66 7.43 -51.93 -0.39 0.28 16 40 H 0.07 0.87 7.67 -51.93 -0.40 0.47 16 41 H 0.35 4.87 7.73 -39.29 -0.30 4.56 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.48 7.43 -51.93 -0.39 0.10 16 45 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 46 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 47 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 49 H 0.12 1.91 7.71 -52.49 -0.40 1.51 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -29.82 386.00 -9.05 -38.87 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.16 Total: 7.35 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.59 Total: -24.50 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.22 Total: -33.65 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.31 Total: -9.53 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.82 -9.05 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271907136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.256 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds