Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00021 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99736 * 3 2 1 5 5 C 1.53000 * 109.47472 * 270.00332 * 3 2 1 6 6 C 1.53002 * 109.46983 * 299.99737 * 5 3 2 7 7 C 1.52997 * 109.47092 * 300.00290 * 6 5 3 8 8 C 1.53000 * 109.47444 * 59.99992 * 7 6 5 9 9 C 1.52998 * 109.46800 * 299.99769 * 8 7 6 10 10 H 1.09001 * 109.47607 * 300.00271 * 9 8 7 11 11 N 1.46896 * 109.47073 * 179.97438 * 9 8 7 12 12 C 1.46905 * 111.00243 * 85.00487 * 11 9 8 13 13 H 1.09005 * 109.46511 * 324.99748 * 12 11 9 14 14 C 1.52996 * 109.47203 * 84.99373 * 12 11 9 15 15 C 1.50698 * 109.47282 * 205.00193 * 12 11 9 16 16 C 1.38297 * 119.93202 * 139.99502 * 15 12 11 17 17 C 1.38101 * 120.07230 * 180.02562 * 16 15 12 18 18 C 1.38886 * 119.92536 * 359.97438 * 17 16 15 19 19 O 1.35750 * 120.06440 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53777 * 19 18 17 21 21 H 1.07993 * 120.00518 * 354.94289 * 20 19 18 22 22 C 1.38663 * 119.99751 * 174.94575 * 20 19 18 23 23 N 1.31556 * 120.00220 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47264 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47375 * 119.99795 * 24 22 20 27 27 H 1.48506 * 109.47301 * 239.99793 * 24 22 20 28 28 C 1.38874 * 119.86623 * 0.27854 * 18 17 16 29 29 C 1.38110 * 119.92772 * 359.48927 * 28 18 17 30 30 H 1.09000 * 109.47087 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47088 * 299.99835 * 1 2 3 32 32 H 1.09001 * 109.47244 * 59.99877 * 1 2 3 33 33 H 1.08996 * 109.47417 * 59.99634 * 5 3 2 34 34 H 1.08992 * 109.47216 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46903 * 59.99804 * 6 5 3 36 36 H 1.08997 * 109.47605 * 179.97438 * 6 5 3 37 37 H 1.09010 * 109.47256 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47383 * 299.99276 * 7 6 5 39 39 H 1.09001 * 109.46984 * 180.02562 * 8 7 6 40 40 H 1.08992 * 109.47216 * 59.99627 * 8 7 6 41 41 H 1.00896 * 111.00459 * 321.04292 * 11 9 8 42 42 H 1.09005 * 109.47081 * 60.00724 * 14 12 11 43 43 H 1.08999 * 109.46944 * 180.02562 * 14 12 11 44 44 H 1.08999 * 109.47872 * 300.00805 * 14 12 11 45 45 H 1.07999 * 119.96698 * 0.02562 * 16 15 12 46 46 H 1.07992 * 120.03608 * 179.97438 * 17 16 15 47 47 H 0.96996 * 120.00178 * 179.97438 * 23 22 20 48 48 H 1.07996 * 120.03745 * 179.72497 * 28 18 17 49 49 H 1.07996 * 119.96227 * 180.23396 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2176 1.7715 -1.4425 6 6 3.1515 0.7975 -2.1638 7 6 4.5001 0.7553 -1.4425 8 6 4.2927 0.2892 0.0000 9 6 3.3589 1.2632 0.7212 10 1 3.8022 2.2590 0.7213 11 7 3.1593 0.8155 2.1060 12 6 4.2371 1.3024 2.9773 13 1 5.1748 1.3171 2.4217 14 6 3.9060 2.7172 3.4563 15 6 4.3728 0.3880 4.1675 16 6 5.6282 0.0590 4.6454 17 6 5.7559 -0.7791 5.7355 18 6 4.6218 -1.2915 6.3522 19 8 4.7440 -2.1152 7.4243 20 6 5.9867 -2.3053 7.9116 21 1 6.8378 -1.8782 7.4022 22 6 6.1720 -3.0492 9.0671 23 7 5.1352 -3.5691 9.6880 24 14 7.8935 -3.3120 9.7427 25 1 8.8787 -2.6285 8.8667 26 1 7.9777 -2.7509 11.1149 27 1 8.1929 -4.7660 9.7832 28 6 3.3627 -0.9635 5.8667 29 6 3.2416 -0.1209 4.7791 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.2569 1.8015 -1.9563 34 1 2.6614 2.7670 -1.4424 35 1 2.7081 -0.1983 -2.1638 36 1 3.2989 1.1292 -3.1915 37 1 5.1653 0.0610 -1.9561 38 1 4.9435 1.7510 -1.4425 39 1 5.2535 0.2596 0.5139 40 1 3.8494 -0.7064 -0.0001 41 1 3.0819 -0.1893 2.1536 42 1 2.9683 2.7026 4.0120 43 1 4.7059 3.0786 4.1024 44 1 3.8078 3.3787 2.5955 45 1 6.5097 0.4581 4.1657 46 1 6.7365 -1.0359 6.1080 47 1 5.2648 -4.0898 10.4960 48 1 2.4791 -1.3639 6.3413 49 1 2.2626 0.1375 4.4034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271907136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = -82.575572 kcal Electronic energy + Delta-G solvation = -27147.201907 eV Core-core repulsion = 23459.389963 eV Total energy + Delta-G solvation = -3687.811944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99376 -40.44827 -38.81645 -37.17092 -35.98704 -34.26833 -32.40104 -31.77609 -31.02503 -29.44147 -28.56761 -27.36541 -27.11527 -24.15011 -23.66616 -23.30101 -22.42471 -21.26135 -20.57026 -19.75360 -18.83252 -17.55126 -16.97581 -16.80234 -16.32288 -16.28765 -15.90415 -15.75836 -15.56027 -15.44310 -15.11576 -14.75432 -14.43788 -14.41877 -14.11438 -13.92955 -13.71888 -13.51250 -13.48959 -13.21776 -13.02150 -12.89680 -12.79204 -12.52962 -12.31832 -12.24300 -12.12363 -12.10830 -11.98529 -11.63751 -11.52781 -11.36013 -11.17237 -11.04926 -10.79386 -10.26577 -9.76617 -9.19954 -8.90041 -8.47410 -6.15450 0.60925 0.69696 1.34458 1.42880 1.52869 2.17328 2.81611 3.02402 3.13345 3.24303 3.53015 3.83964 3.88123 3.97750 4.07499 4.13979 4.23250 4.29640 4.32100 4.43086 4.48929 4.52193 4.56794 4.60637 4.62605 4.70748 4.71445 4.76382 4.83961 4.91686 4.94763 4.99135 5.04426 5.08033 5.13866 5.14846 5.24223 5.26915 5.30293 5.31918 5.40111 5.48026 5.56606 5.58913 5.71914 5.76231 6.03221 6.21847 6.29147 6.46983 6.52580 6.97471 7.79150 8.76275 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022975 B = 0.002517 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.434404 B =11122.586990 C =11431.975541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.102 3.898 4 H 0.064 0.936 5 C -0.137 4.137 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.142 4.142 9 C 0.095 3.905 10 H 0.096 0.904 11 N -0.677 5.677 12 C 0.146 3.854 13 H 0.054 0.946 14 C -0.129 4.129 15 C -0.162 4.162 16 C -0.064 4.064 17 C -0.242 4.242 18 C 0.114 3.886 19 O -0.234 6.234 20 C -0.412 4.412 21 H 0.101 0.899 22 C -0.024 4.024 23 N -0.922 5.922 24 Si 1.019 2.981 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.268 1.268 28 C -0.206 4.206 29 C -0.045 4.045 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.343 0.657 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.138 0.862 46 H 0.117 0.883 47 H 0.272 0.728 48 H 0.110 0.890 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 13.538 -23.926 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C 0.044 3.956 4 H 0.082 0.918 5 C -0.176 4.176 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.181 4.181 9 C -0.015 4.015 10 H 0.114 0.886 11 N -0.307 5.307 12 C 0.037 3.963 13 H 0.072 0.928 14 C -0.187 4.187 15 C -0.163 4.163 16 C -0.082 4.082 17 C -0.261 4.261 18 C 0.064 3.936 19 O -0.140 6.140 20 C -0.488 4.488 21 H 0.118 0.882 22 C -0.221 4.221 23 N -0.560 5.560 24 Si 0.838 3.162 25 H -0.175 1.175 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.225 4.225 29 C -0.063 4.063 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.162 0.838 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.132 13.651 -23.456 27.452 hybrid contribution 1.023 -1.077 0.644 1.619 sum -3.108 12.574 -22.812 26.233 Atomic orbital electron populations 1.22803 0.80758 1.02844 1.00125 1.87880 1.20128 1.28291 1.95038 1.22150 0.94024 0.84647 0.94798 0.91788 1.22024 1.00439 0.99826 0.95267 1.21390 0.95025 0.99621 0.98844 1.21454 0.97427 1.01618 0.94470 1.22124 0.99158 0.99771 0.97018 1.21739 0.93894 0.98983 0.86901 0.88602 1.60674 1.45143 1.17832 1.07060 1.20179 0.93036 0.93513 0.89617 0.92831 1.21755 1.01493 0.94360 1.01085 1.19760 0.92356 1.03378 1.00797 1.20930 0.97803 0.95215 0.94292 1.21209 0.97905 1.05679 1.01324 1.19933 0.95283 0.90134 0.88235 1.83943 1.32128 1.57287 1.40688 1.21853 0.82632 1.34835 1.09517 0.88158 1.26599 1.04535 0.95582 0.95418 1.70191 1.32611 1.34171 1.19039 0.84524 0.74514 0.78735 0.78393 1.17463 1.19309 1.19331 1.20472 0.94264 1.05805 1.01977 1.20739 0.99382 0.93757 0.92423 0.89754 0.94063 0.93417 0.91294 0.89866 0.92851 0.91188 0.92132 0.91107 0.92824 0.92806 0.83810 0.92930 0.92702 0.91358 0.84438 0.86475 0.91851 0.87227 0.83945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.82 113.37 1.23 1.71 16 2 O -0.39 -7.91 8.86 -148.98 -1.32 -9.23 16 3 C 0.10 1.70 2.57 30.59 0.08 1.78 16 4 H 0.06 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.14 -1.77 5.63 30.59 0.17 -1.59 16 6 C -0.11 -1.55 5.78 30.59 0.18 -1.37 16 7 C -0.11 -1.63 5.92 30.59 0.18 -1.45 16 8 C -0.14 -2.61 5.01 30.59 0.15 -2.46 16 9 C 0.09 1.68 2.06 44.92 0.09 1.77 16 10 H 0.10 1.50 7.12 -2.39 -0.02 1.49 16 11 N -0.68 -14.82 5.30 -473.31 -2.51 -17.33 16 12 C 0.15 3.39 2.63 44.17 0.12 3.51 16 13 H 0.05 1.17 6.97 -2.38 -0.02 1.15 16 14 C -0.13 -2.71 9.38 71.98 0.67 -2.04 16 15 C -0.16 -5.06 4.72 -19.84 -0.09 -5.15 16 16 C -0.06 -2.22 9.66 22.25 0.21 -2.00 16 17 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 18 C 0.11 5.81 6.65 22.58 0.15 5.96 16 19 O -0.23 -14.35 9.76 -22.72 -0.22 -14.58 16 20 C -0.41 -24.39 9.49 67.92 0.64 -23.75 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 22 C -0.02 -1.39 5.49 84.84 0.47 -0.92 16 23 N -0.92 -57.39 13.67 21.62 0.30 -57.10 16 24 Si 1.02 43.41 29.55 68.60 2.03 45.43 16 25 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 C -0.21 -9.03 9.99 22.39 0.22 -8.81 16 29 C -0.04 -1.55 9.00 22.25 0.20 -1.35 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 33 H 0.07 0.81 7.87 -2.39 -0.02 0.80 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.92 7.68 -2.38 -0.02 0.90 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 1.04 7.43 -2.39 -0.02 1.03 16 40 H 0.05 1.21 7.67 -2.39 -0.02 1.19 16 41 H 0.34 8.76 7.73 -89.70 -0.69 8.06 16 42 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.15 7.43 -2.39 -0.02 1.14 16 45 H 0.14 3.84 8.03 -2.91 -0.02 3.82 16 46 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 49 H 0.14 4.29 7.71 -2.91 -0.02 4.27 16 Total: -1.00 -69.27 386.00 3.39 -65.88 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.24 Total: 33.55 kcal Atomic # 6 Polarization: -51.52 SS G_CDS: 4.88 Total: -46.64 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.21 Total: -74.42 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.54 Total: -23.80 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.27 3.39 -65.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271907136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.697 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds