Wall clock time and date at job start Tue Mar 31 2020 12:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47013 * 2 1 4 4 O 1.42899 * 109.46820 * 119.99422 * 2 1 3 5 5 C 1.52995 * 109.47403 * 239.99717 * 2 1 3 6 6 C 1.52997 * 109.47012 * 174.00407 * 5 2 1 7 7 H 1.09005 * 109.45411 * 185.94283 * 6 5 2 8 8 C 1.53041 * 109.46390 * 305.91288 * 6 5 2 9 9 C 1.53118 * 109.31182 * 179.21983 * 8 6 5 10 10 C 1.53117 * 109.15631 * 302.32270 * 9 8 6 11 11 C 1.53039 * 109.28158 * 57.65677 * 10 9 8 12 12 N 1.46840 * 109.52235 * 300.82037 * 11 10 9 13 13 C 1.46903 * 110.99952 * 185.83411 * 12 11 10 14 14 C 1.50693 * 109.47067 * 296.76915 * 13 12 11 15 15 C 1.38305 * 119.93178 * 267.61578 * 14 13 12 16 16 C 1.38095 * 120.06722 * 179.72960 * 15 14 13 17 17 C 1.38878 * 119.93021 * 0.56758 * 16 15 14 18 18 O 1.35759 * 120.06980 * 179.68124 * 17 16 15 19 19 C 1.34825 * 117.00166 * 185.74604 * 18 17 16 20 20 H 1.07997 * 120.00188 * 354.89534 * 19 18 17 21 21 C 1.38653 * 119.99827 * 174.88680 * 19 18 17 22 22 N 1.31557 * 120.00360 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47391 * 60.00415 * 23 21 19 25 25 H 1.48509 * 109.47009 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47303 * 300.00290 * 23 21 19 27 27 C 1.38874 * 119.86586 * 359.70855 * 17 16 15 28 28 C 1.38100 * 119.92943 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47646 * 300.00331 * 1 2 3 31 31 H 1.09002 * 109.46798 * 60.00484 * 1 2 3 32 32 H 0.96701 * 113.99592 * 63.77449 * 4 2 1 33 33 H 1.08998 * 109.47477 * 54.00435 * 5 2 1 34 34 H 1.09005 * 109.47192 * 294.00293 * 5 2 1 35 35 H 1.08994 * 109.50301 * 59.25020 * 8 6 5 36 36 H 1.09006 * 109.49921 * 299.17901 * 8 6 5 37 37 H 1.08998 * 109.52613 * 62.22761 * 9 8 6 38 38 H 1.09000 * 109.52502 * 182.42167 * 9 8 6 39 39 H 1.09004 * 109.50252 * 177.59651 * 10 9 8 40 40 H 1.09000 * 109.50461 * 297.67107 * 10 9 8 41 41 H 1.09006 * 109.45719 * 60.83405 * 11 10 9 42 42 H 1.08998 * 109.46510 * 180.80093 * 11 10 9 43 43 H 1.08995 * 109.46557 * 56.77405 * 13 12 11 44 44 H 1.09004 * 109.46604 * 176.76743 * 13 12 11 45 45 H 1.07998 * 119.96230 * 359.97438 * 15 14 13 46 46 H 1.07997 * 120.03561 * 180.27132 * 16 15 14 47 47 H 0.97000 * 120.00083 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.04154 * 179.97438 * 27 17 16 49 49 H 1.08001 * 119.96880 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7213 -1.2491 6 6 3.5626 -0.5921 -1.3267 7 1 3.9152 -1.0133 -2.2682 8 6 3.9535 0.8857 -1.2512 9 6 5.4785 1.0097 -1.3094 10 6 6.0923 0.2049 -0.1606 11 6 5.6404 -1.2534 -0.2672 12 7 4.1747 -1.3186 -0.2058 13 6 3.7109 -2.7119 -0.1661 14 6 4.1068 -3.4096 -1.4418 15 6 3.2310 -3.4407 -2.5118 16 6 3.5930 -4.0744 -3.6841 17 6 4.8334 -4.6911 -3.7839 18 8 5.1896 -5.3206 -4.9328 19 6 6.3546 -5.9993 -4.9230 20 1 6.9970 -5.9568 -4.0560 21 6 6.7276 -6.7518 -6.0262 22 7 5.9452 -6.8033 -7.0825 23 14 8.3413 -7.6927 -6.0124 24 1 8.3339 -8.6720 -4.8960 25 1 8.5060 -8.4120 -7.3012 26 1 9.4672 -6.7420 -5.8293 27 6 5.7083 -4.6632 -2.7058 28 6 5.3430 -4.0221 -1.5384 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7693 -1.6103 1.2045 33 1 1.5918 -0.2733 -2.1359 34 1 1.7671 -1.7753 -1.1971 35 1 3.5891 1.3111 -0.3162 36 1 3.5123 1.4221 -2.0913 37 1 5.8396 0.6197 -2.2611 38 1 5.7627 2.0575 -1.2127 39 1 7.1795 0.2543 -0.2218 40 1 5.7623 0.6201 0.7917 41 1 5.9833 -1.6715 -1.2136 42 1 6.0643 -1.8262 0.5576 43 1 4.1654 -3.2220 0.6832 44 1 2.6259 -2.7309 -0.0632 45 1 2.2645 -2.9654 -2.4317 46 1 2.9105 -4.0946 -4.5208 47 1 6.2064 -7.3295 -7.8544 48 1 6.6734 -5.1422 -2.7801 49 1 6.0231 -3.9996 -0.6997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279762332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:05 Heat of formation + Delta-G solvation = -55.607600 kcal Electronic energy + Delta-G solvation = -28214.319807 eV Core-core repulsion = 24527.677282 eV Total energy + Delta-G solvation = -3686.642525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21756 -38.76903 -37.12498 -36.41870 -33.58454 -32.78369 -32.24258 -30.47982 -30.07008 -29.28223 -26.86716 -25.77000 -25.02480 -23.12185 -22.30525 -21.80619 -21.21188 -20.47053 -18.91837 -18.03809 -16.94269 -16.40791 -15.94366 -15.44532 -15.18067 -15.00573 -14.61770 -14.45961 -14.24759 -14.21917 -13.68995 -13.46680 -13.39157 -13.21710 -12.84869 -12.77514 -12.51295 -12.43504 -12.06960 -11.78247 -11.74269 -11.64354 -11.32822 -11.27642 -11.23713 -11.05141 -10.83379 -10.75408 -10.64000 -10.48141 -10.38765 -10.21237 -9.91275 -9.72444 -9.36258 -8.85729 -8.21210 -7.93066 -7.20396 -6.48595 -4.07729 2.16421 2.25606 3.10438 3.11348 3.14281 3.93500 4.10855 4.44870 4.53597 4.68814 4.82224 4.93300 5.00092 5.05251 5.12060 5.15002 5.19985 5.28145 5.41048 5.46318 5.47679 5.54802 5.62000 5.65185 5.70940 5.73878 5.77360 5.83522 5.92045 5.96295 5.99454 6.01445 6.04969 6.09984 6.15449 6.19159 6.27560 6.30809 6.38850 6.50441 6.66791 6.86035 7.00942 7.17256 7.27949 7.37953 7.39571 7.46217 7.78244 7.81015 7.96177 8.96916 9.66653 10.69291 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.003209 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.420855 B = 8723.852472 C = 9302.714284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.109 3.891 3 H 0.096 0.904 4 O -0.540 6.540 5 C -0.155 4.155 6 C 0.089 3.911 7 H 0.050 0.950 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.114 4.114 11 C 0.052 3.948 12 N -0.503 5.503 13 C 0.108 3.892 14 C -0.220 4.220 15 C -0.067 4.067 16 C -0.195 4.195 17 C 0.155 3.845 18 O -0.178 6.178 19 C -0.393 4.393 20 H 0.091 0.909 21 C 0.040 3.960 22 N -0.863 5.863 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.234 4.234 28 C -0.060 4.060 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.364 0.636 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.271 0.729 48 H 0.125 0.875 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.720 12.958 13.561 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.050 3.950 3 H 0.114 0.886 4 O -0.345 6.345 5 C -0.193 4.193 6 C -0.020 4.020 7 H 0.068 0.932 8 C -0.152 4.152 9 C -0.158 4.158 10 C -0.152 4.152 11 C -0.076 4.076 12 N -0.226 5.226 13 C -0.019 4.019 14 C -0.223 4.223 15 C -0.086 4.086 16 C -0.214 4.214 17 C 0.101 3.899 18 O -0.081 6.081 19 C -0.469 4.469 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.254 4.254 28 C -0.079 4.079 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.211 0.789 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.081 0.919 48 H 0.143 0.857 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.735 13.663 13.673 20.162 hybrid contribution 0.881 -1.525 -1.139 2.097 sum -4.854 12.138 12.534 18.110 Atomic orbital electron populations 1.22576 0.97665 1.02204 1.02162 1.21822 0.91218 0.96982 0.85026 0.88621 1.86662 1.79798 1.26141 1.41865 1.22573 0.95891 1.01907 0.98919 1.21489 0.93225 0.93922 0.93349 0.93244 1.21705 0.95780 0.95813 1.01853 1.21556 0.95783 0.99628 0.98880 1.21549 0.99214 0.95403 0.98987 1.22084 0.88482 0.96265 1.00768 1.62427 1.06121 1.11776 1.42316 1.20979 0.99721 0.87044 0.94169 1.20005 0.96680 1.07653 0.97941 1.20582 0.97928 0.97638 0.92446 1.20207 0.95961 1.06095 0.99136 1.19390 0.92537 0.91464 0.86476 1.83977 1.38755 1.57239 1.28138 1.21272 0.95297 1.26941 1.03402 0.89167 1.25285 0.99552 0.96977 0.94627 1.70027 1.36629 1.38498 1.04588 0.85791 0.80213 0.79384 0.78117 1.19463 1.20224 1.19493 1.21151 1.01756 1.07847 0.94620 1.20614 0.95197 0.95628 0.96427 0.92627 0.92215 0.92060 0.78874 0.91118 0.90620 0.90818 0.92263 0.92354 0.92352 0.92210 0.91430 0.94032 0.91402 0.91036 0.91082 0.87262 0.86770 0.91933 0.85743 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 9.56 37.16 0.36 -1.16 16 2 C 0.11 1.03 3.26 -26.73 -0.09 0.94 16 3 H 0.10 0.94 5.97 -51.93 -0.31 0.63 16 4 O -0.54 -5.82 11.46 -35.23 -0.40 -6.22 16 5 C -0.16 -1.58 3.93 -26.74 -0.11 -1.69 16 6 C 0.09 1.07 1.51 -67.68 -0.10 0.97 16 7 H 0.05 0.75 6.59 -51.93 -0.34 0.40 16 8 C -0.11 -1.24 4.89 -26.65 -0.13 -1.37 16 9 C -0.12 -1.35 6.00 -26.61 -0.16 -1.51 16 10 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 11 C 0.05 0.67 4.61 -3.84 -0.02 0.65 16 12 N -0.50 -6.17 3.34 -228.06 -0.76 -6.94 16 13 C 0.11 1.37 4.56 -4.98 -0.02 1.34 16 14 C -0.22 -3.52 4.04 -104.58 -0.42 -3.94 16 15 C -0.07 -1.14 8.04 -39.61 -0.32 -1.46 16 16 C -0.19 -4.05 9.99 -39.40 -0.39 -4.44 16 17 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 18 O -0.18 -5.07 9.76 0.03 0.00 -5.07 16 19 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 20 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 23 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 28 C -0.06 -1.06 7.93 -39.61 -0.31 -1.38 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.36 3.24 7.20 45.56 0.33 3.57 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.79 3.99 -51.93 -0.21 0.59 16 35 H 0.07 0.81 6.16 -51.93 -0.32 0.49 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.04 0.63 6.41 -51.93 -0.33 0.30 16 42 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 44 H 0.07 0.79 4.35 -51.93 -0.23 0.57 16 45 H 0.11 1.56 5.72 -52.49 -0.30 1.26 16 46 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.12 2.71 5.64 -52.49 -0.30 2.41 16 49 H 0.10 1.62 7.90 -52.49 -0.41 1.21 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.10 365.26 -9.13 -39.22 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.90 Total: 8.65 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.31 Total: -26.10 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.00 Total: -31.44 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.40 Total: -11.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.10 -9.13 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279762332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.384 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds