Wall clock time and date at job start Tue Mar 31 2020 12:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47013 * 2 1 4 4 O 1.42899 * 109.46820 * 119.99422 * 2 1 3 5 5 C 1.52995 * 109.47403 * 239.99717 * 2 1 3 6 6 C 1.52997 * 109.47012 * 174.00407 * 5 2 1 7 7 H 1.09005 * 109.45411 * 185.94283 * 6 5 2 8 8 C 1.53041 * 109.46390 * 305.91288 * 6 5 2 9 9 C 1.53118 * 109.31182 * 179.21983 * 8 6 5 10 10 C 1.53117 * 109.15631 * 302.32270 * 9 8 6 11 11 C 1.53039 * 109.28158 * 57.65677 * 10 9 8 12 12 N 1.46840 * 109.52235 * 300.82037 * 11 10 9 13 13 C 1.46903 * 110.99952 * 185.83411 * 12 11 10 14 14 C 1.50693 * 109.47067 * 296.76915 * 13 12 11 15 15 C 1.38305 * 119.93178 * 267.61578 * 14 13 12 16 16 C 1.38095 * 120.06722 * 179.72960 * 15 14 13 17 17 C 1.38878 * 119.93021 * 0.56758 * 16 15 14 18 18 O 1.35759 * 120.06980 * 179.68124 * 17 16 15 19 19 C 1.34825 * 117.00166 * 185.74604 * 18 17 16 20 20 H 1.07997 * 120.00188 * 354.89534 * 19 18 17 21 21 C 1.38653 * 119.99827 * 174.88680 * 19 18 17 22 22 N 1.31557 * 120.00360 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99765 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47391 * 60.00415 * 23 21 19 25 25 H 1.48509 * 109.47009 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47303 * 300.00290 * 23 21 19 27 27 C 1.38874 * 119.86586 * 359.70855 * 17 16 15 28 28 C 1.38100 * 119.92943 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47646 * 300.00331 * 1 2 3 31 31 H 1.09002 * 109.46798 * 60.00484 * 1 2 3 32 32 H 0.96701 * 113.99592 * 63.77449 * 4 2 1 33 33 H 1.08998 * 109.47477 * 54.00435 * 5 2 1 34 34 H 1.09005 * 109.47192 * 294.00293 * 5 2 1 35 35 H 1.08994 * 109.50301 * 59.25020 * 8 6 5 36 36 H 1.09006 * 109.49921 * 299.17901 * 8 6 5 37 37 H 1.08998 * 109.52613 * 62.22761 * 9 8 6 38 38 H 1.09000 * 109.52502 * 182.42167 * 9 8 6 39 39 H 1.09004 * 109.50252 * 177.59651 * 10 9 8 40 40 H 1.09000 * 109.50461 * 297.67107 * 10 9 8 41 41 H 1.09006 * 109.45719 * 60.83405 * 11 10 9 42 42 H 1.08998 * 109.46510 * 180.80093 * 11 10 9 43 43 H 1.08995 * 109.46557 * 56.77405 * 13 12 11 44 44 H 1.09004 * 109.46604 * 176.76743 * 13 12 11 45 45 H 1.07998 * 119.96230 * 359.97438 * 15 14 13 46 46 H 1.07997 * 120.03561 * 180.27132 * 16 15 14 47 47 H 0.97000 * 120.00083 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.04154 * 179.97438 * 27 17 16 49 49 H 1.08001 * 119.96880 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7213 -1.2491 6 6 3.5626 -0.5921 -1.3267 7 1 3.9152 -1.0133 -2.2682 8 6 3.9535 0.8857 -1.2512 9 6 5.4785 1.0097 -1.3094 10 6 6.0923 0.2049 -0.1606 11 6 5.6404 -1.2534 -0.2672 12 7 4.1747 -1.3186 -0.2058 13 6 3.7109 -2.7119 -0.1661 14 6 4.1068 -3.4096 -1.4418 15 6 3.2310 -3.4407 -2.5118 16 6 3.5930 -4.0744 -3.6841 17 6 4.8334 -4.6911 -3.7839 18 8 5.1896 -5.3206 -4.9328 19 6 6.3546 -5.9993 -4.9230 20 1 6.9970 -5.9568 -4.0560 21 6 6.7276 -6.7518 -6.0262 22 7 5.9452 -6.8033 -7.0825 23 14 8.3413 -7.6927 -6.0124 24 1 8.3339 -8.6720 -4.8960 25 1 8.5060 -8.4120 -7.3012 26 1 9.4672 -6.7420 -5.8293 27 6 5.7083 -4.6632 -2.7058 28 6 5.3430 -4.0221 -1.5384 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.7693 -1.6103 1.2045 33 1 1.5918 -0.2733 -2.1359 34 1 1.7671 -1.7753 -1.1971 35 1 3.5891 1.3111 -0.3162 36 1 3.5123 1.4221 -2.0913 37 1 5.8396 0.6197 -2.2611 38 1 5.7627 2.0575 -1.2127 39 1 7.1795 0.2543 -0.2218 40 1 5.7623 0.6201 0.7917 41 1 5.9833 -1.6715 -1.2136 42 1 6.0643 -1.8262 0.5576 43 1 4.1654 -3.2220 0.6832 44 1 2.6259 -2.7309 -0.0632 45 1 2.2645 -2.9654 -2.4317 46 1 2.9105 -4.0946 -4.5208 47 1 6.2064 -7.3295 -7.8544 48 1 6.6734 -5.1422 -2.7801 49 1 6.0231 -3.9996 -0.6997 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279762332.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:04 Heat of formation + Delta-G solvation = -74.689390 kcal Electronic energy + Delta-G solvation = -28215.147255 eV Core-core repulsion = 24527.677282 eV Total energy + Delta-G solvation = -3687.469974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41062 -40.32829 -38.30673 -37.67025 -34.83422 -34.13544 -33.66461 -31.83904 -31.07017 -30.70952 -27.92843 -27.35660 -26.42142 -24.23154 -23.43955 -23.16293 -22.31494 -21.69803 -20.00821 -19.82899 -18.79239 -17.29413 -16.79794 -16.61699 -16.35906 -16.31646 -16.04832 -16.00037 -15.51281 -15.49554 -15.14392 -14.70420 -14.62356 -14.39018 -14.10759 -14.03027 -13.66837 -13.59894 -13.39419 -12.95018 -12.88858 -12.65019 -12.57000 -12.47071 -12.42736 -12.33611 -12.20691 -12.13949 -12.08510 -11.64864 -11.26085 -11.23407 -11.16019 -10.82343 -10.76587 -10.52623 -9.79085 -9.09529 -8.85845 -8.50219 -6.18735 0.55967 0.65876 1.31932 1.42534 1.48242 2.14984 2.76713 3.06009 3.23127 3.48775 3.68766 3.82967 3.96016 3.99037 4.06195 4.09783 4.13522 4.21283 4.30986 4.38697 4.42319 4.54946 4.57199 4.60403 4.66096 4.75528 4.78267 4.85334 4.90533 4.93179 5.00679 5.01869 5.05678 5.10645 5.11262 5.15926 5.19890 5.26979 5.27865 5.33418 5.38360 5.48966 5.54265 5.58941 5.68682 5.75866 5.99516 6.20302 6.32114 6.36867 6.94315 7.14051 7.75156 8.72797 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.003209 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.420855 B = 8723.852472 C = 9302.714284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 H 0.094 0.906 4 O -0.554 6.554 5 C -0.151 4.151 6 C 0.087 3.913 7 H 0.017 0.983 8 C -0.110 4.110 9 C -0.123 4.123 10 C -0.110 4.110 11 C 0.049 3.951 12 N -0.492 5.492 13 C 0.108 3.892 14 C -0.189 4.189 15 C -0.056 4.056 16 C -0.207 4.207 17 C 0.114 3.886 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.022 4.022 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.058 4.058 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.373 0.627 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.014 0.986 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.109 0.891 47 H 0.273 0.727 48 H 0.114 0.886 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 14.431 16.777 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.055 3.945 3 H 0.111 0.889 4 O -0.360 6.360 5 C -0.189 4.189 6 C -0.022 4.022 7 H 0.035 0.965 8 C -0.148 4.148 9 C -0.160 4.160 10 C -0.147 4.147 11 C -0.079 4.079 12 N -0.214 5.214 13 C -0.019 4.019 14 C -0.192 4.192 15 C -0.075 4.075 16 C -0.227 4.227 17 C 0.063 3.937 18 O -0.140 6.140 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.219 4.219 22 N -0.559 5.559 23 Si 0.836 3.164 24 H -0.181 1.181 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.263 4.263 28 C -0.076 4.076 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.221 0.779 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.162 0.838 46 H 0.127 0.873 47 H 0.082 0.918 48 H 0.132 0.868 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.235 15.172 16.945 23.584 hybrid contribution 0.868 -1.729 -1.870 2.691 sum -5.367 13.443 15.075 20.899 Atomic orbital electron populations 1.22517 0.96441 1.02663 1.02551 1.21770 0.92070 0.96533 0.84082 0.88873 1.86645 1.80102 1.26951 1.42308 1.22557 0.94280 1.02127 0.99943 1.21531 0.94569 0.94502 0.91559 0.96513 1.21690 0.95554 0.95024 1.02532 1.21578 0.96068 1.00489 0.97904 1.21520 0.99700 0.94326 0.99189 1.22142 0.88730 0.97408 0.99625 1.62499 1.05852 1.11055 1.42032 1.21178 1.01548 0.86899 0.92275 1.20564 0.95148 1.04471 0.98992 1.20956 0.99433 0.96090 0.90978 1.20465 0.95057 1.06498 1.00632 1.19931 0.94394 0.92737 0.86615 1.83937 1.39661 1.59744 1.30683 1.21754 0.95775 1.27464 1.04151 0.88350 1.26579 1.03691 0.97787 0.93861 1.70174 1.39362 1.40633 1.05701 0.84674 0.75091 0.77993 0.78625 1.18126 1.19458 1.18225 1.21230 1.01124 1.08588 0.95403 1.20938 0.96386 0.94540 0.95785 0.92145 0.92187 0.91369 0.77924 0.90360 0.90610 0.90156 0.91447 0.94236 0.90796 0.91561 0.90800 0.96767 0.90479 0.89534 0.88589 0.83781 0.87287 0.91788 0.86841 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.56 71.98 0.69 -1.63 16 2 C 0.11 1.75 3.26 30.59 0.10 1.85 16 3 H 0.09 1.50 5.97 -2.38 -0.01 1.49 16 4 O -0.55 -9.77 11.46 -148.98 -1.71 -11.47 16 5 C -0.15 -2.58 3.93 30.59 0.12 -2.46 16 6 C 0.09 1.88 1.51 44.92 0.07 1.95 16 7 H 0.02 0.48 6.59 -2.38 -0.02 0.47 16 8 C -0.11 -2.14 4.89 30.65 0.15 -1.99 16 9 C -0.12 -2.51 6.00 30.67 0.18 -2.32 16 10 C -0.11 -2.22 6.09 30.65 0.19 -2.03 16 11 C 0.05 1.14 4.61 86.33 0.40 1.54 16 12 N -0.49 -10.51 3.34 -875.45 -2.92 -13.43 16 13 C 0.11 2.31 4.56 85.55 0.39 2.70 16 14 C -0.19 -5.61 4.04 -19.83 -0.08 -5.69 16 15 C -0.06 -1.82 8.04 22.25 0.18 -1.64 16 16 C -0.21 -8.84 9.99 22.39 0.22 -8.62 16 17 C 0.11 5.72 6.65 22.58 0.15 5.87 16 18 O -0.23 -14.29 9.76 -22.79 -0.22 -14.51 16 19 C -0.42 -24.57 9.49 67.92 0.64 -23.92 16 20 H 0.10 5.36 5.21 -2.91 -0.02 5.35 16 21 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 22 N -0.92 -57.04 13.67 21.61 0.30 -56.74 16 23 Si 1.02 43.24 29.55 68.60 2.03 45.27 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 28 C -0.06 -1.98 7.93 22.25 0.18 -1.80 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.37 4.99 7.20 -74.06 -0.53 4.46 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.27 3.99 -2.38 -0.01 1.26 16 35 H 0.08 1.50 6.16 -2.39 -0.01 1.48 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.01 0.41 6.41 -2.38 -0.02 0.39 16 42 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 43 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 44 H 0.10 1.66 4.35 -2.39 -0.01 1.65 16 45 H 0.14 3.67 5.72 -2.91 -0.02 3.65 16 46 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 47 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 49 H 0.13 3.78 7.90 -2.91 -0.02 3.76 16 Total: -1.00 -70.76 365.26 2.15 -68.62 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.43 Total: 31.80 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 4.25 Total: -49.53 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -2.63 Total: -70.17 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.93 Total: -25.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.76 2.15 -68.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279762332.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.072 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds