Wall clock time and date at job start Tue Mar 31 2020 13:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46724 * 2 1 4 4 C 1.53005 * 109.46533 * 119.99660 * 2 1 3 5 5 O 1.42903 * 109.46676 * 180.97477 * 4 2 1 6 6 N 1.46893 * 109.47268 * 239.99502 * 2 1 3 7 7 C 1.46897 * 110.99889 * 95.38128 * 6 2 1 8 8 C 1.50701 * 109.47374 * 70.83546 * 7 6 2 9 9 C 1.38308 * 119.93063 * 90.70296 * 8 7 6 10 10 C 1.38096 * 120.07033 * 180.02562 * 9 8 7 11 11 C 1.38882 * 119.93172 * 359.97438 * 10 9 8 12 12 O 1.35748 * 120.07133 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00031 * 5.56251 * 12 11 10 14 14 H 1.08005 * 120.00087 * 354.93648 * 13 12 11 15 15 C 1.38655 * 120.00188 * 174.93692 * 13 12 11 16 16 N 1.31556 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00152 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47423 * 59.99348 * 17 15 13 19 19 H 1.48500 * 109.47082 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47248 * 299.99643 * 17 15 13 21 21 C 1.38889 * 119.85992 * 0.27917 * 11 10 9 22 22 C 1.38098 * 119.92960 * 359.49526 * 21 11 10 23 23 C 1.46896 * 111.00490 * 331.42586 * 6 2 1 24 24 C 1.53002 * 109.47107 * 296.72820 * 23 6 2 25 25 C 1.53786 * 113.61146 * 281.50307 * 24 23 6 26 26 C 1.53947 * 87.01929 * 220.04860 * 25 24 23 27 27 C 1.53774 * 87.11448 * 25.36270 * 26 25 24 28 28 H 1.09004 * 109.46998 * 185.54527 * 1 2 3 29 29 H 1.09000 * 109.47642 * 305.55198 * 1 2 3 30 30 H 1.09005 * 109.46693 * 65.55215 * 1 2 3 31 31 H 1.08999 * 109.47092 * 300.97142 * 4 2 1 32 32 H 1.08996 * 109.47352 * 60.97126 * 4 2 1 33 33 H 0.96702 * 113.99461 * 184.99966 * 5 4 2 34 34 H 1.08994 * 109.47072 * 310.83659 * 7 6 2 35 35 H 1.09003 * 109.47060 * 190.83388 * 7 6 2 36 36 H 1.07994 * 119.96291 * 0.02562 * 9 8 7 37 37 H 1.07995 * 120.03934 * 179.97438 * 10 9 8 38 38 H 0.96999 * 119.99999 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.03166 * 179.72141 * 21 11 10 40 40 H 1.07993 * 119.96560 * 180.23308 * 22 21 11 41 41 H 1.09002 * 109.47035 * 56.72206 * 23 6 2 42 42 H 1.08997 * 109.47696 * 176.72401 * 23 6 2 43 43 H 1.08998 * 112.85121 * 52.69488 * 24 23 6 44 44 H 1.08999 * 113.61307 * 334.56931 * 25 24 23 45 45 H 1.09007 * 113.61492 * 105.46885 * 25 24 23 46 46 H 1.09006 * 113.54102 * 270.80834 * 26 25 24 47 47 H 1.09005 * 113.66717 * 139.93786 * 26 25 24 48 48 H 1.09000 * 113.61818 * 220.08735 * 27 26 25 49 49 H 1.09006 * 113.69053 * 89.19602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4688 -0.7014 1.2609 6 7 2.0197 -0.6926 -1.1993 7 6 2.3165 0.2631 -2.2747 8 6 3.5473 1.0557 -1.9171 9 6 4.7956 0.6050 -2.3063 10 6 5.9254 1.3287 -1.9797 11 6 5.8072 2.5106 -1.2599 12 8 6.9159 3.2246 -0.9377 13 6 8.0893 2.7945 -1.4437 14 1 8.1298 1.8733 -2.0061 15 6 9.2443 3.5348 -1.2420 16 7 9.1950 4.6571 -0.5573 17 14 10.8698 2.9393 -1.9435 18 1 10.7633 2.8362 -3.4211 19 1 11.9436 3.9027 -1.5912 20 1 11.1949 1.6059 -1.3765 21 6 4.5527 2.9578 -0.8660 22 6 3.4263 2.2320 -1.1997 23 6 1.0598 -1.7096 -1.6489 24 6 0.9131 -2.7846 -0.5701 25 6 2.0691 -3.7986 -0.5497 26 6 1.0072 -4.8826 -0.2904 27 6 -0.0012 -3.9504 -0.9823 28 1 -0.3633 -1.0229 0.0993 29 1 -0.3634 0.5975 0.8361 30 1 -0.3633 0.4253 -0.9356 31 1 1.6624 -0.2175 2.1392 32 1 1.6909 -1.7537 1.2408 33 1 3.8632 -1.2067 1.9849 34 1 1.4723 0.9407 -2.4018 35 1 2.4907 -0.2787 -3.2044 36 1 4.8868 -0.3139 -2.8663 37 1 6.8999 0.9761 -2.2835 38 1 10.0029 5.1752 -0.4165 39 1 4.4580 3.8742 -0.3023 40 1 2.4503 2.5811 -0.8969 41 1 0.0921 -1.2413 -1.8291 42 1 1.4196 -2.1666 -2.5707 43 1 0.6779 -2.3709 0.4105 44 1 2.5748 -3.9035 -1.5095 45 1 2.7606 -3.6559 0.2809 46 1 0.7985 -5.0435 0.7673 47 1 1.1876 -5.8106 -0.8331 48 1 -0.9788 -3.9300 -0.5007 49 1 -0.0636 -4.0959 -2.0608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280605036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:55 Heat of formation + Delta-G solvation = -11.567592 kcal Electronic energy + Delta-G solvation = -27699.500097 eV Core-core repulsion = 24014.767290 eV Total energy + Delta-G solvation = -3684.732807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.12405 -38.86435 -37.64150 -36.41012 -35.51510 -32.31474 -31.54737 -30.06618 -29.89703 -27.58871 -26.32771 -25.57384 -25.40612 -23.88246 -22.63680 -21.81777 -20.49498 -19.90769 -19.29270 -17.86210 -17.08114 -16.82110 -16.35115 -15.58235 -15.48589 -14.87082 -14.48063 -14.42210 -14.19078 -13.99751 -13.89274 -13.45414 -13.32243 -13.03340 -12.67648 -12.55695 -12.52528 -12.29450 -12.17433 -11.99918 -11.94286 -11.57425 -11.41670 -11.16437 -11.08929 -10.89456 -10.70410 -10.59896 -10.57387 -10.42670 -10.33083 -10.30014 -10.06134 -9.45658 -9.20840 -8.72840 -8.01531 -7.98892 -7.01890 -6.35550 -3.93798 2.37715 2.45811 3.18890 3.19866 3.22505 3.94149 4.04820 4.37390 4.50121 4.57043 4.62194 4.75602 4.80746 5.00107 5.11361 5.20201 5.23340 5.30374 5.38672 5.41531 5.44550 5.49539 5.50283 5.52803 5.56602 5.60577 5.63694 5.70674 5.74299 5.81386 5.87390 5.92044 5.94829 6.00298 6.04824 6.16532 6.18893 6.34728 6.41489 6.56056 6.84848 7.05653 7.16665 7.23920 7.31073 7.43014 7.57204 7.58136 7.96624 7.98607 8.10415 9.10554 9.83215 10.82955 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.002930 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.227934 B = 9553.084126 C = 9995.016763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.093 0.907 4 C 0.081 3.919 5 O -0.543 6.543 6 N -0.511 5.511 7 C 0.113 3.887 8 C -0.164 4.164 9 C -0.046 4.046 10 C -0.232 4.232 11 C 0.157 3.843 12 O -0.182 6.182 13 C -0.389 4.389 14 H 0.090 0.910 15 C 0.038 3.962 16 N -0.867 5.867 17 Si 0.939 3.061 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.191 4.191 22 C -0.067 4.067 23 C 0.058 3.942 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.147 4.147 27 C -0.138 4.138 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.366 0.634 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.269 0.731 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.514 -15.227 0.609 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 H 0.111 0.889 4 C 0.002 3.998 5 O -0.345 6.345 6 N -0.234 5.234 7 C -0.014 4.014 8 C -0.166 4.166 9 C -0.065 4.065 10 C -0.251 4.251 11 C 0.103 3.897 12 O -0.086 6.086 13 C -0.465 4.465 14 H 0.108 0.892 15 C -0.166 4.166 16 N -0.502 5.502 17 Si 0.764 3.236 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.211 4.211 22 C -0.086 4.086 23 C -0.069 4.069 24 C -0.134 4.134 25 C -0.157 4.157 26 C -0.185 4.185 27 C -0.176 4.176 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.211 0.789 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.965 -14.695 0.390 23.213 hybrid contribution 0.133 -0.271 0.004 0.302 sum -17.831 -14.966 0.394 23.283 Atomic orbital electron populations 1.22503 0.96857 1.02684 1.02147 1.21784 0.91786 0.99570 0.90458 0.88889 1.22479 0.82586 0.98932 0.95766 1.86755 1.18358 1.75648 1.53787 1.62140 1.42533 1.13998 1.04717 1.20802 0.94661 0.92708 0.93208 1.18972 0.93743 0.97117 1.06737 1.20470 0.91611 0.97096 0.97355 1.21110 0.98989 0.97884 1.07158 1.19348 0.88001 0.90469 0.91845 1.83970 1.12805 1.48702 1.63084 1.21262 0.82740 1.08101 1.34411 0.89232 1.25255 0.98936 0.95399 0.96971 1.70033 1.29325 1.13340 1.37518 0.85809 0.80032 0.78515 0.79227 1.19581 1.20378 1.19547 1.20101 0.90206 1.02464 1.08301 1.20376 0.96388 0.94489 0.97305 1.22225 0.94349 0.92950 0.97415 1.22963 0.97040 0.93776 0.99659 1.22803 0.95936 0.94616 1.02337 1.22885 0.97597 0.97566 1.00414 1.22936 0.97456 0.96570 1.00667 0.91367 0.92273 0.92189 0.94870 0.93034 0.78903 0.95245 0.91175 0.87883 0.85874 0.92133 0.86951 0.87936 0.94640 0.91235 0.88154 0.90204 0.91588 0.90654 0.91796 0.91967 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 7.80 37.16 0.29 -1.45 16 2 C 0.07 0.90 2.33 -67.71 -0.16 0.74 16 3 H 0.09 1.37 4.77 -51.93 -0.25 1.12 16 4 C 0.08 0.96 6.35 37.16 0.24 1.19 16 5 O -0.54 -8.04 13.54 -35.23 -0.48 -8.51 16 6 N -0.51 -6.58 4.26 -228.09 -0.97 -7.55 16 7 C 0.11 1.60 5.08 -4.98 -0.03 1.57 16 8 C -0.16 -2.94 5.14 -104.57 -0.54 -3.48 16 9 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 10 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 11 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 12 O -0.18 -5.38 9.76 0.07 0.00 -5.38 16 13 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 14 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 17 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 C -0.19 -4.26 9.99 -39.39 -0.39 -4.65 16 22 C -0.07 -1.26 8.27 -39.61 -0.33 -1.58 16 23 C 0.06 0.60 4.19 -3.82 -0.02 0.59 16 24 C -0.12 -1.05 1.99 -89.80 -0.18 -1.23 16 25 C -0.12 -1.14 7.54 -25.83 -0.19 -1.34 16 26 C -0.15 -1.15 8.09 -25.83 -0.21 -1.36 16 27 C -0.14 -1.06 7.65 -25.92 -0.20 -1.25 16 28 H 0.07 0.58 4.92 -51.93 -0.26 0.32 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.53 4.48 -51.93 -0.23 0.30 16 33 H 0.37 3.88 9.12 45.56 0.42 4.29 16 34 H 0.03 0.39 8.01 -51.93 -0.42 -0.03 16 35 H 0.07 0.93 7.81 -51.93 -0.41 0.52 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.12 2.83 5.64 -52.49 -0.30 2.54 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 40 H 0.10 1.65 7.04 -52.49 -0.37 1.28 16 41 H 0.04 0.34 6.00 -51.93 -0.31 0.03 16 42 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 43 H 0.10 0.92 3.59 -51.93 -0.19 0.73 16 44 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 45 H 0.07 0.69 8.10 -51.92 -0.42 0.27 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -32.61 378.28 -9.26 -41.87 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.73 Total: 8.59 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -2.52 Total: -25.48 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: -0.21 Total: -32.86 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.48 Total: -13.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.61 -9.26 -41.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280605036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.306 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds