Wall clock time and date at job start Tue Mar 31 2020 13:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46724 * 2 1 4 4 C 1.53005 * 109.46533 * 119.99660 * 2 1 3 5 5 O 1.42903 * 109.46676 * 180.97477 * 4 2 1 6 6 N 1.46893 * 109.47268 * 239.99502 * 2 1 3 7 7 C 1.46897 * 110.99889 * 95.38128 * 6 2 1 8 8 C 1.50701 * 109.47374 * 70.83546 * 7 6 2 9 9 C 1.38308 * 119.93063 * 90.70296 * 8 7 6 10 10 C 1.38096 * 120.07033 * 180.02562 * 9 8 7 11 11 C 1.38882 * 119.93172 * 359.97438 * 10 9 8 12 12 O 1.35748 * 120.07133 * 180.02562 * 11 10 9 13 13 C 1.34825 * 117.00031 * 5.56251 * 12 11 10 14 14 H 1.08005 * 120.00087 * 354.93648 * 13 12 11 15 15 C 1.38655 * 120.00188 * 174.93692 * 13 12 11 16 16 N 1.31556 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00152 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47423 * 59.99348 * 17 15 13 19 19 H 1.48500 * 109.47082 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47248 * 299.99643 * 17 15 13 21 21 C 1.38889 * 119.85992 * 0.27917 * 11 10 9 22 22 C 1.38098 * 119.92960 * 359.49526 * 21 11 10 23 23 C 1.46896 * 111.00490 * 331.42586 * 6 2 1 24 24 C 1.53002 * 109.47107 * 296.72820 * 23 6 2 25 25 C 1.53786 * 113.61146 * 281.50307 * 24 23 6 26 26 C 1.53947 * 87.01929 * 220.04860 * 25 24 23 27 27 C 1.53774 * 87.11448 * 25.36270 * 26 25 24 28 28 H 1.09004 * 109.46998 * 185.54527 * 1 2 3 29 29 H 1.09000 * 109.47642 * 305.55198 * 1 2 3 30 30 H 1.09005 * 109.46693 * 65.55215 * 1 2 3 31 31 H 1.08999 * 109.47092 * 300.97142 * 4 2 1 32 32 H 1.08996 * 109.47352 * 60.97126 * 4 2 1 33 33 H 0.96702 * 113.99461 * 184.99966 * 5 4 2 34 34 H 1.08994 * 109.47072 * 310.83659 * 7 6 2 35 35 H 1.09003 * 109.47060 * 190.83388 * 7 6 2 36 36 H 1.07994 * 119.96291 * 0.02562 * 9 8 7 37 37 H 1.07995 * 120.03934 * 179.97438 * 10 9 8 38 38 H 0.96999 * 119.99999 * 180.02562 * 16 15 13 39 39 H 1.07997 * 120.03166 * 179.72141 * 21 11 10 40 40 H 1.07993 * 119.96560 * 180.23308 * 22 21 11 41 41 H 1.09002 * 109.47035 * 56.72206 * 23 6 2 42 42 H 1.08997 * 109.47696 * 176.72401 * 23 6 2 43 43 H 1.08998 * 112.85121 * 52.69488 * 24 23 6 44 44 H 1.08999 * 113.61307 * 334.56931 * 25 24 23 45 45 H 1.09007 * 113.61492 * 105.46885 * 25 24 23 46 46 H 1.09006 * 113.54102 * 270.80834 * 26 25 24 47 47 H 1.09005 * 113.66717 * 139.93786 * 26 25 24 48 48 H 1.09000 * 113.61818 * 220.08735 * 27 26 25 49 49 H 1.09006 * 113.69053 * 89.19602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 8 3.4688 -0.7014 1.2609 6 7 2.0197 -0.6926 -1.1993 7 6 2.3165 0.2631 -2.2747 8 6 3.5473 1.0557 -1.9171 9 6 4.7956 0.6050 -2.3063 10 6 5.9254 1.3287 -1.9797 11 6 5.8072 2.5106 -1.2599 12 8 6.9159 3.2246 -0.9377 13 6 8.0893 2.7945 -1.4437 14 1 8.1298 1.8733 -2.0061 15 6 9.2443 3.5348 -1.2420 16 7 9.1950 4.6571 -0.5573 17 14 10.8698 2.9393 -1.9435 18 1 10.7633 2.8362 -3.4211 19 1 11.9436 3.9027 -1.5912 20 1 11.1949 1.6059 -1.3765 21 6 4.5527 2.9578 -0.8660 22 6 3.4263 2.2320 -1.1997 23 6 1.0598 -1.7096 -1.6489 24 6 0.9131 -2.7846 -0.5701 25 6 2.0691 -3.7986 -0.5497 26 6 1.0072 -4.8826 -0.2904 27 6 -0.0012 -3.9504 -0.9823 28 1 -0.3633 -1.0229 0.0993 29 1 -0.3634 0.5975 0.8361 30 1 -0.3633 0.4253 -0.9356 31 1 1.6624 -0.2175 2.1392 32 1 1.6909 -1.7537 1.2408 33 1 3.8632 -1.2067 1.9849 34 1 1.4723 0.9407 -2.4018 35 1 2.4907 -0.2787 -3.2044 36 1 4.8868 -0.3139 -2.8663 37 1 6.8999 0.9761 -2.2835 38 1 10.0029 5.1752 -0.4165 39 1 4.4580 3.8742 -0.3023 40 1 2.4503 2.5811 -0.8969 41 1 0.0921 -1.2413 -1.8291 42 1 1.4196 -2.1666 -2.5707 43 1 0.6779 -2.3709 0.4105 44 1 2.5748 -3.9035 -1.5095 45 1 2.7606 -3.6559 0.2809 46 1 0.7985 -5.0435 0.7673 47 1 1.1876 -5.8106 -0.8331 48 1 -0.9788 -3.9300 -0.5007 49 1 -0.0636 -4.0959 -2.0608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280605036.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:54 Heat of formation + Delta-G solvation = -33.779390 kcal Electronic energy + Delta-G solvation = -27700.463273 eV Core-core repulsion = 24014.767290 eV Total energy + Delta-G solvation = -3685.695983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11904 -40.48667 -38.76701 -37.84587 -36.67618 -34.31370 -32.78069 -31.73399 -31.09311 -28.73647 -27.41722 -27.10848 -26.25206 -25.21653 -23.75197 -23.20631 -22.07175 -20.75414 -20.16233 -19.78768 -18.77055 -18.09206 -17.23814 -16.59337 -16.52731 -16.30140 -16.04888 -15.88228 -15.47001 -15.37404 -15.04508 -14.87516 -14.64983 -14.40963 -14.19735 -13.87870 -13.56836 -13.25126 -13.14767 -13.04380 -13.00614 -12.90328 -12.73791 -12.43838 -12.33987 -12.27497 -12.14061 -12.05098 -11.88185 -11.52500 -11.29246 -11.13018 -11.00857 -10.94539 -10.74768 -10.37424 -9.68459 -8.99987 -8.79482 -8.44700 -6.12489 0.66857 0.76803 1.34784 1.46111 1.51343 2.19691 2.77260 3.04366 3.34003 3.50624 3.55823 3.82685 3.89408 3.90876 4.07292 4.09042 4.13430 4.20077 4.22675 4.34094 4.46061 4.54155 4.56563 4.60653 4.65654 4.68581 4.70526 4.74720 4.82011 4.86109 4.94993 4.96228 4.98835 5.06215 5.13680 5.16054 5.16690 5.18861 5.28076 5.34416 5.36804 5.50673 5.62191 5.73028 5.76728 5.88503 6.06209 6.26046 6.31728 6.42079 7.00052 7.09330 7.82803 8.78824 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.002930 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.227934 B = 9553.084126 C = 9995.016763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 H 0.068 0.932 4 C 0.077 3.923 5 O -0.578 6.578 6 N -0.524 5.524 7 C 0.114 3.886 8 C -0.138 4.138 9 C -0.049 4.049 10 C -0.241 4.241 11 C 0.115 3.885 12 O -0.235 6.235 13 C -0.413 4.413 14 H 0.099 0.901 15 C -0.024 4.024 16 N -0.923 5.923 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.258 1.258 21 C -0.204 4.204 22 C -0.059 4.059 23 C 0.060 3.940 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.142 4.142 27 C -0.129 4.129 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.380 0.620 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.272 0.728 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 -17.871 -0.384 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.041 4.041 3 H 0.086 0.914 4 C 0.000 4.000 5 O -0.383 6.383 6 N -0.248 5.248 7 C -0.013 4.013 8 C -0.139 4.139 9 C -0.068 4.068 10 C -0.260 4.260 11 C 0.065 3.935 12 O -0.142 6.142 13 C -0.489 4.489 14 H 0.116 0.884 15 C -0.221 4.221 16 N -0.562 5.562 17 Si 0.837 3.163 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.182 1.182 21 C -0.223 4.223 22 C -0.077 4.077 23 C -0.067 4.067 24 C -0.132 4.132 25 C -0.165 4.165 26 C -0.180 4.180 27 C -0.167 4.167 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.227 0.773 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.705 -17.381 -0.602 27.040 hybrid contribution 0.637 0.399 0.323 0.818 sum -20.068 -16.982 -0.279 26.291 Atomic orbital electron populations 1.22431 0.94401 1.03772 1.02782 1.21833 0.93758 0.98035 0.90427 0.91401 1.22648 0.81206 1.00107 0.96085 1.86692 1.20296 1.76370 1.54976 1.62035 1.44275 1.14052 1.04420 1.20801 0.93053 0.93207 0.94227 1.19515 0.94927 0.96249 1.03190 1.20797 0.91165 0.97602 0.97206 1.21191 0.99941 0.97635 1.07256 1.19853 0.88044 0.91690 0.93939 1.83930 1.13947 1.50785 1.65578 1.21761 0.83355 1.08814 1.34945 0.88414 1.26583 1.02975 0.95387 0.97133 1.70185 1.30671 1.15296 1.40031 0.84662 0.74345 0.78392 0.78887 1.18157 1.19480 1.18221 1.20352 0.90445 1.02980 1.08544 1.20742 0.96585 0.94172 0.96204 1.22279 0.94262 0.92394 0.97772 1.22938 0.97191 0.93665 0.99394 1.22809 0.96225 0.96172 1.01268 1.22873 0.96759 0.97344 1.00997 1.22898 0.97644 0.95144 1.01042 0.90076 0.91400 0.91791 0.93884 0.91343 0.77308 0.93471 0.89658 0.85155 0.86822 0.91895 0.87448 0.84592 0.93225 0.91155 0.88035 0.91194 0.93051 0.90010 0.91402 0.90716 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 7.80 71.98 0.56 -2.09 16 2 C 0.07 1.49 2.33 44.92 0.10 1.60 16 3 H 0.07 1.82 4.77 -2.39 -0.01 1.81 16 4 C 0.08 1.67 6.35 71.98 0.46 2.13 16 5 O -0.58 -16.66 13.54 -148.98 -2.02 -18.68 16 6 N -0.52 -11.85 4.26 -875.54 -3.73 -15.58 16 7 C 0.11 2.82 5.08 85.56 0.43 3.25 16 8 C -0.14 -4.64 5.14 -19.83 -0.10 -4.75 16 9 C -0.05 -1.87 9.69 22.25 0.22 -1.66 16 10 C -0.24 -11.35 9.17 22.39 0.21 -11.14 16 11 C 0.11 6.10 6.65 22.58 0.15 6.25 16 12 O -0.24 -14.91 9.76 -22.67 -0.22 -15.13 16 13 C -0.41 -25.14 9.49 67.92 0.64 -24.50 16 14 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 15 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 16 N -0.92 -58.50 13.67 21.61 0.30 -58.20 16 17 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 C -0.20 -9.36 9.99 22.39 0.22 -9.14 16 22 C -0.06 -2.13 8.27 22.25 0.18 -1.95 16 23 C 0.06 1.01 4.19 86.30 0.36 1.37 16 24 C -0.11 -1.68 1.99 -10.26 -0.02 -1.70 16 25 C -0.13 -2.17 7.54 31.18 0.24 -1.93 16 26 C -0.14 -1.83 8.09 31.17 0.25 -1.57 16 27 C -0.13 -1.50 7.65 31.12 0.24 -1.26 16 28 H 0.08 1.03 4.92 -2.38 -0.01 1.01 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.93 7.49 -2.38 -0.02 0.92 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.23 4.48 -2.39 -0.01 1.22 16 33 H 0.38 7.93 9.12 -74.06 -0.68 7.26 16 34 H 0.05 1.03 8.01 -2.39 -0.02 1.02 16 35 H 0.09 1.90 7.81 -2.39 -0.02 1.88 16 36 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.11 5.45 5.64 -2.91 -0.02 5.44 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.14 4.04 7.04 -2.91 -0.02 4.01 16 41 H 0.05 0.73 6.00 -2.39 -0.01 0.71 16 42 H 0.07 1.20 7.82 -2.39 -0.02 1.18 16 43 H 0.10 1.49 3.59 -2.39 -0.01 1.48 16 44 H 0.07 1.32 8.02 -2.39 -0.02 1.30 16 45 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 46 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 47 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 0.92 8.10 -2.38 -0.02 0.90 16 Total: -1.00 -75.82 378.28 1.26 -74.56 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.29 Total: 34.63 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 4.61 Total: -48.03 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -3.43 Total: -73.78 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -2.24 Total: -33.81 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -75.82 1.26 -74.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280605036.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.779 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds