Wall clock time and date at job start Tue Mar 31 2020 13:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47377 * 2 1 4 4 C 1.52999 * 109.46919 * 240.00029 * 2 1 3 5 5 O 1.42901 * 109.47073 * 175.99796 * 4 2 1 6 6 N 1.46905 * 109.47290 * 119.99815 * 2 1 3 7 7 C 1.46901 * 111.00032 * 215.38055 * 6 2 1 8 8 C 1.50697 * 109.47131 * 71.75848 * 7 6 2 9 9 C 1.38299 * 119.93052 * 270.09542 * 8 7 6 10 10 C 1.38107 * 120.06781 * 179.72437 * 9 8 7 11 11 C 1.38884 * 119.92557 * 0.56990 * 10 9 8 12 12 O 1.35755 * 120.06565 * 179.68480 * 11 10 9 13 13 C 1.34828 * 116.99563 * 185.58283 * 12 11 10 14 14 H 1.07996 * 120.00535 * 5.15583 * 13 12 11 15 15 C 1.38660 * 119.99789 * 185.15375 * 13 12 11 16 16 N 1.31560 * 120.00022 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47233 * 60.00391 * 17 15 13 19 19 H 1.48504 * 109.47045 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47375 * 300.00126 * 17 15 13 21 21 C 1.38872 * 119.86458 * 359.70054 * 11 10 9 22 22 C 1.38099 * 119.93091 * 0.02562 * 21 11 10 23 23 C 1.46896 * 110.99699 * 91.42846 * 6 2 1 24 24 C 1.53003 * 109.47070 * 292.78759 * 23 6 2 25 25 C 1.53780 * 113.61446 * 281.62583 * 24 23 6 26 26 C 1.53953 * 87.02113 * 220.04847 * 25 24 23 27 27 C 1.53780 * 87.11126 * 25.36551 * 26 25 24 28 28 H 1.09009 * 109.47165 * 309.65472 * 1 2 3 29 29 H 1.08995 * 109.47348 * 69.65270 * 1 2 3 30 30 H 1.09001 * 109.47371 * 189.65660 * 1 2 3 31 31 H 1.09004 * 109.47332 * 295.99480 * 4 2 1 32 32 H 1.08996 * 109.47229 * 55.99668 * 4 2 1 33 33 H 0.96706 * 114.00203 * 185.00556 * 5 4 2 34 34 H 1.08995 * 109.46890 * 191.76352 * 7 6 2 35 35 H 1.09005 * 109.47054 * 311.75860 * 7 6 2 36 36 H 1.07995 * 119.97176 * 359.97438 * 9 8 7 37 37 H 1.07996 * 120.03876 * 180.27174 * 10 9 8 38 38 H 0.96997 * 120.00509 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.03687 * 179.97438 * 21 11 10 40 40 H 1.08010 * 119.96450 * 179.97438 * 22 21 11 41 41 H 1.09000 * 109.47392 * 172.79181 * 23 6 2 42 42 H 1.09004 * 109.47447 * 52.78854 * 23 6 2 43 43 H 1.09001 * 112.84963 * 52.82650 * 24 23 6 44 44 H 1.09000 * 113.61862 * 334.56831 * 25 24 23 45 45 H 1.09004 * 113.61106 * 105.47095 * 25 24 23 46 46 H 1.09004 * 113.54087 * 270.81423 * 26 25 24 47 47 H 1.08998 * 113.67052 * 139.93532 * 26 25 24 48 48 H 1.09003 * 113.61418 * 220.09141 * 27 26 25 49 49 H 1.08996 * 113.69068 * 89.19623 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 3.4658 -0.6404 -1.2972 6 7 2.0197 -0.6925 1.1995 7 6 3.2494 -0.0666 1.7035 8 6 2.9174 1.2673 2.3211 9 6 2.9275 2.4101 1.5422 10 6 2.6182 3.6332 2.1040 11 6 2.3082 3.7165 3.4553 12 8 2.0099 4.9182 4.0118 13 6 1.8322 4.9466 5.3480 14 1 2.0100 4.0581 5.9355 15 6 1.4210 6.1168 5.9680 16 7 1.2039 7.1991 5.2523 17 14 1.1740 6.1560 7.8191 18 1 2.4526 5.8215 8.4963 19 1 0.7355 7.5136 8.2313 20 1 0.1372 5.1642 8.2013 21 6 2.3043 2.5679 4.2359 22 6 2.6090 1.3470 3.6670 23 6 2.2274 -2.1222 0.9339 24 6 0.8768 -2.7955 0.6816 25 6 0.0834 -3.0854 1.9666 26 6 -0.3131 -4.4268 1.3235 27 6 0.9740 -4.3182 0.4890 28 1 -0.3634 0.6559 0.7913 29 1 -0.3634 0.3573 -0.9635 30 1 -0.3634 -1.0131 0.1724 31 1 1.7363 -1.7676 -1.2141 32 1 1.6192 -0.2505 -2.1377 33 1 3.8539 -1.0101 -2.1022 34 1 3.7038 -0.7120 2.4551 35 1 3.9476 0.0784 0.8791 36 1 3.1737 2.3454 0.4927 37 1 2.6220 4.5246 1.4943 38 1 0.9166 8.0178 5.6859 39 1 2.0641 2.6296 5.2870 40 1 2.6066 0.4535 4.2737 41 1 2.7090 -2.5855 1.7950 42 1 2.8620 -2.2403 0.0555 43 1 0.2915 -2.2944 -0.0894 44 1 0.7101 -3.1939 2.8517 45 1 -0.7574 -2.4094 2.1224 46 1 -1.2250 -4.3718 0.7288 47 1 -0.3116 -5.2640 2.0214 48 1 0.8513 -4.6360 -0.5464 49 1 1.8455 -4.7641 0.9682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280605037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:57 Heat of formation + Delta-G solvation = -37.044059 kcal Electronic energy + Delta-G solvation = -27537.639843 eV Core-core repulsion = 23851.802294 eV Total energy + Delta-G solvation = -3685.837550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15564 -40.52023 -38.83225 -38.04431 -36.32225 -34.32181 -32.93793 -31.75945 -31.32687 -28.70659 -27.39546 -26.99478 -26.25123 -25.16116 -23.78324 -23.24316 -22.06441 -20.69124 -20.20160 -19.80150 -18.78965 -18.22571 -17.48380 -16.77447 -16.46171 -16.23709 -16.13425 -15.88125 -15.50207 -15.44738 -14.97349 -14.89556 -14.53923 -14.32528 -13.97931 -13.76653 -13.60828 -13.49734 -13.22882 -13.17320 -13.08451 -12.92789 -12.58823 -12.49392 -12.33709 -12.26106 -12.13802 -11.93431 -11.82509 -11.60114 -11.19555 -11.16380 -11.03833 -10.99376 -10.76324 -10.59428 -9.73515 -9.03985 -8.83030 -8.46116 -6.14000 0.62099 0.72124 1.34765 1.45803 1.51161 2.18718 2.75816 3.03535 3.28451 3.41253 3.52272 3.85230 3.89752 3.91748 4.04831 4.10873 4.13238 4.16144 4.24710 4.32555 4.47541 4.53946 4.57929 4.60365 4.63214 4.69985 4.75169 4.84126 4.85892 4.92513 4.95865 4.97813 5.00400 5.06735 5.12791 5.16042 5.16761 5.26095 5.28871 5.33688 5.45564 5.50904 5.60085 5.73951 5.75210 5.86933 6.03999 6.23192 6.30074 6.40686 6.91317 6.98603 7.80384 8.77270 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.002910 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.988705 B = 9620.374399 C =10437.633591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.048 3.952 5 O -0.584 6.584 6 N -0.525 5.525 7 C 0.117 3.883 8 C -0.144 4.144 9 C -0.059 4.059 10 C -0.204 4.204 11 C 0.114 3.886 12 O -0.234 6.234 13 C -0.413 4.413 14 H 0.099 0.901 15 C -0.023 4.023 16 N -0.922 5.922 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.241 4.241 22 C -0.052 4.052 23 C 0.060 3.940 24 C -0.114 4.114 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.129 4.129 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 -24.746 -12.699 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 H 0.085 0.915 4 C -0.031 4.031 5 O -0.393 6.393 6 N -0.249 5.249 7 C -0.010 4.010 8 C -0.146 4.146 9 C -0.078 4.078 10 C -0.223 4.223 11 C 0.064 3.936 12 O -0.140 6.140 13 C -0.489 4.489 14 H 0.117 0.883 15 C -0.220 4.220 16 N -0.561 5.561 17 Si 0.837 3.163 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.182 1.182 21 C -0.260 4.260 22 C -0.070 4.070 23 C -0.067 4.067 24 C -0.132 4.132 25 C -0.168 4.168 26 C -0.179 4.179 27 C -0.167 4.167 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.049 -24.005 -11.830 26.762 hybrid contribution 0.410 0.556 -0.190 0.717 sum 0.360 -23.449 -12.020 26.352 Atomic orbital electron populations 1.22000 0.93522 1.03246 1.01444 1.21879 0.95968 0.98329 0.87686 0.91457 1.22966 0.81268 1.00871 0.97978 1.86502 1.20288 1.85665 1.46798 1.62165 1.29928 1.02510 1.30273 1.20769 0.90855 0.91152 0.98238 1.19616 1.06383 0.95089 0.93472 1.20777 0.97197 0.90606 0.99178 1.20384 1.10330 0.99218 0.92391 1.19880 0.94057 0.86036 0.93640 1.83946 1.78873 1.27029 1.24198 1.21759 1.47743 0.99653 0.79763 0.88320 1.26586 0.95704 0.93638 1.06109 1.70180 1.45285 1.01957 1.38638 0.84662 0.79680 0.78395 0.73566 1.18152 1.19534 1.18183 1.21235 1.11083 0.93091 1.00629 1.20862 0.95440 0.95756 0.94975 1.22297 0.96777 0.86992 1.00641 1.22898 0.96074 0.95400 0.98828 1.22840 0.99617 0.97071 0.97233 1.22864 0.98085 0.97509 0.99441 1.22892 0.98197 0.94986 1.00657 0.94114 0.91423 0.90051 0.91086 0.92710 0.75834 0.90426 0.92907 0.84756 0.87184 0.91853 0.86553 0.84845 0.91681 0.92622 0.88043 0.91028 0.92875 0.89944 0.91362 0.90750 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.19 71.98 0.66 -2.41 16 2 C 0.07 1.57 2.41 44.91 0.11 1.68 16 3 H 0.07 1.83 4.89 -2.39 -0.01 1.82 16 4 C 0.05 0.77 5.51 71.98 0.40 1.17 16 5 O -0.58 -9.76 10.90 -148.98 -1.62 -11.39 16 6 N -0.53 -12.26 4.31 -875.52 -3.77 -16.04 16 7 C 0.12 3.09 4.97 85.56 0.42 3.52 16 8 C -0.14 -4.88 5.14 -19.84 -0.10 -4.98 16 9 C -0.06 -2.15 8.31 22.25 0.18 -1.97 16 10 C -0.20 -9.18 9.99 22.39 0.22 -8.96 16 11 C 0.11 5.94 6.65 22.58 0.15 6.09 16 12 O -0.23 -14.56 9.76 -22.77 -0.22 -14.78 16 13 C -0.41 -24.80 9.45 67.92 0.64 -24.16 16 14 H 0.10 5.46 5.29 -2.91 -0.02 5.45 16 15 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 16 N -0.92 -57.89 13.67 21.62 0.30 -57.60 16 17 Si 1.02 43.89 29.55 68.60 2.03 45.92 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 C -0.24 -11.07 9.14 22.39 0.20 -10.87 16 22 C -0.05 -1.93 9.69 22.25 0.22 -1.71 16 23 C 0.06 1.10 4.16 86.31 0.36 1.45 16 24 C -0.11 -1.75 2.04 -10.27 -0.02 -1.77 16 25 C -0.13 -2.26 7.60 31.18 0.24 -2.02 16 26 C -0.14 -1.88 8.09 31.18 0.25 -1.63 16 27 C -0.13 -1.57 7.65 31.12 0.24 -1.33 16 28 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.08 1.51 4.54 -2.39 -0.01 1.50 16 31 H 0.07 0.96 4.72 -2.38 -0.01 0.95 16 32 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 33 H 0.39 3.07 9.12 -74.05 -0.68 2.39 16 34 H 0.08 1.90 7.74 -2.39 -0.02 1.88 16 35 H 0.05 1.41 6.55 -2.38 -0.02 1.39 16 36 H 0.13 4.18 7.08 -2.91 -0.02 4.15 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 39 H 0.12 5.43 5.71 -2.91 -0.02 5.42 16 40 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.06 1.22 7.73 -2.39 -0.02 1.20 16 42 H 0.06 0.96 5.08 -2.38 -0.01 0.95 16 43 H 0.10 1.54 4.11 -2.39 -0.01 1.53 16 44 H 0.07 1.35 8.02 -2.39 -0.02 1.33 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.96 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -72.80 375.02 1.64 -71.16 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.29 Total: 31.52 kcal Atomic # 6 Polarization: -53.43 SS G_CDS: 4.64 Total: -48.79 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -3.48 Total: -73.64 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.85 Total: -26.17 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.80 1.64 -71.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280605037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.117 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds