Wall clock time and date at job start Tue Mar 31 2020 13:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47127 * 2 1 4 4 C 1.52994 * 109.47260 * 120.00349 * 2 1 3 5 5 O 1.42900 * 109.47317 * 179.67969 * 4 2 1 6 6 N 1.46902 * 109.46819 * 240.00497 * 2 1 3 7 7 C 1.46894 * 111.00166 * 77.87721 * 6 2 1 8 8 C 1.50701 * 109.47228 * 68.80818 * 7 6 2 9 9 C 1.38298 * 119.93328 * 88.77054 * 8 7 6 10 10 C 1.38102 * 120.06713 * 180.02562 * 9 8 7 11 11 C 1.38877 * 119.93359 * 359.97027 * 10 9 8 12 12 O 1.35743 * 120.07055 * 180.02562 * 11 10 9 13 13 C 1.34835 * 117.00119 * 5.19718 * 12 11 10 14 14 H 1.08001 * 119.99889 * 354.93666 * 13 12 11 15 15 C 1.38655 * 120.00080 * 174.93205 * 13 12 11 16 16 N 1.31556 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00108 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47022 * 89.99883 * 17 15 13 19 19 H 1.48497 * 109.47201 * 210.00199 * 17 15 13 20 20 H 1.48506 * 109.46846 * 330.00002 * 17 15 13 21 21 C 1.38877 * 119.85902 * 0.28207 * 11 10 9 22 22 C 1.38102 * 119.93059 * 359.48884 * 21 11 10 23 23 C 1.46899 * 111.00140 * 313.92062 * 6 2 1 24 24 C 1.54270 * 110.03044 * 291.57254 * 23 6 2 25 25 C 1.54892 * 104.19333 * 217.10097 * 24 23 6 26 26 C 1.54888 * 102.74662 * 37.94208 * 25 24 23 27 27 C 1.53869 * 110.03762 * 174.40404 * 23 6 2 28 28 H 1.09007 * 109.46871 * 186.47460 * 1 2 3 29 29 H 1.09005 * 109.46736 * 306.46871 * 1 2 3 30 30 H 1.08996 * 109.47141 * 66.47333 * 1 2 3 31 31 H 1.09005 * 109.47047 * 299.67899 * 4 2 1 32 32 H 1.08996 * 109.47359 * 59.67866 * 4 2 1 33 33 H 0.96699 * 114.00541 * 184.99085 * 5 4 2 34 34 H 1.08999 * 109.47231 * 308.80515 * 7 6 2 35 35 H 1.08998 * 109.47421 * 188.80880 * 7 6 2 36 36 H 1.08001 * 119.96463 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.03102 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99346 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03182 * 179.72281 * 21 11 10 40 40 H 1.08010 * 119.96258 * 180.23212 * 22 21 11 41 41 H 1.08999 * 110.01509 * 53.00944 * 23 6 2 42 42 H 1.08998 * 110.48998 * 335.77634 * 24 23 6 43 43 H 1.09003 * 110.48811 * 98.42762 * 24 23 6 44 44 H 1.08994 * 110.75829 * 279.62559 * 25 24 23 45 45 H 1.09003 * 110.91603 * 156.32386 * 25 24 23 46 46 H 1.09003 * 110.48684 * 203.37796 * 26 25 24 47 47 H 1.09002 * 110.48823 * 80.73770 * 26 25 24 48 48 H 1.09001 * 110.03522 * 238.57487 * 27 23 6 49 49 H 1.09007 * 110.02566 * 359.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4690 -0.7278 1.2454 6 7 2.0196 -0.6924 -1.1995 7 6 1.9236 0.1727 -2.3828 8 6 2.9156 1.3007 -2.2623 9 6 4.2038 1.1407 -2.7394 10 6 5.1153 2.1724 -2.6299 11 6 4.7370 3.3717 -2.0406 12 8 5.6305 4.3878 -1.9321 13 6 6.8348 4.2085 -2.5114 14 1 7.0816 3.2581 -2.9610 15 6 7.7563 5.2444 -2.5301 16 7 8.9310 5.0696 -3.0958 17 14 7.3296 6.8882 -1.7519 18 1 7.7388 6.8812 -0.3244 19 1 8.0457 7.9751 -2.4669 20 1 5.8650 7.1150 -1.8459 21 6 3.4442 3.5274 -1.5579 22 6 2.5359 2.4936 -1.6745 23 6 1.2982 -1.9546 -1.4102 24 6 1.6633 -2.9633 -0.3015 25 6 1.7095 -4.3290 -1.0308 26 6 2.3400 -3.9651 -2.3980 27 6 1.7284 -2.5916 -2.7431 28 1 -0.3633 -1.0212 0.1159 29 1 -0.3633 0.6109 0.8265 30 1 -0.3633 0.4102 -0.9422 31 1 1.6814 -0.2042 2.1392 32 1 1.6721 -1.7472 1.2520 33 1 3.8620 -1.2349 1.9690 34 1 0.9155 0.5813 -2.4533 35 1 2.1428 -0.4099 -3.2776 36 1 4.4975 0.2077 -3.1972 37 1 6.1213 2.0467 -3.0023 38 1 9.5755 5.7945 -3.1092 39 1 3.1483 4.4573 -1.0950 40 1 1.5292 2.6154 -1.3026 41 1 0.2233 -1.7740 -1.4124 42 1 2.6378 -2.7254 0.1249 43 1 0.8979 -2.9710 0.4745 44 1 0.7049 -4.7304 -1.1633 45 1 2.3389 -5.0370 -0.4916 46 1 2.0684 -4.7039 -3.1521 47 1 3.4238 -3.8890 -2.3103 48 1 0.8621 -2.7209 -3.3920 49 1 2.4722 -1.9639 -3.2339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287981720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:49 Heat of formation + Delta-G solvation = -34.806724 kcal Electronic energy + Delta-G solvation = -27902.126222 eV Core-core repulsion = 24216.385691 eV Total energy + Delta-G solvation = -3685.740531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.15141 -38.94043 -36.88549 -36.62309 -35.16820 -32.40466 -31.78103 -30.14356 -29.67677 -28.79511 -27.06874 -26.26644 -25.44134 -23.91004 -22.09383 -20.95297 -20.85168 -20.28453 -18.83040 -17.81053 -17.21342 -17.14888 -16.71810 -16.11261 -15.14065 -14.99681 -14.61032 -14.31556 -14.08881 -13.88518 -13.72475 -13.64595 -13.59867 -13.30400 -12.84842 -12.58663 -12.51508 -12.30224 -12.16327 -12.04777 -11.69713 -11.49481 -11.28753 -11.24324 -11.07972 -11.00855 -10.80395 -10.70288 -10.61127 -10.56814 -10.42628 -10.36071 -10.06820 -9.61917 -9.30228 -8.80248 -8.14053 -8.05035 -7.20605 -6.35465 -4.01566 2.22713 2.29872 3.26434 3.29129 3.44095 3.92951 4.28324 4.28803 4.43552 4.55019 4.65452 4.76755 4.93547 4.99097 5.07078 5.18284 5.25332 5.28161 5.31820 5.36631 5.39464 5.43007 5.43560 5.47461 5.53565 5.61081 5.64074 5.72520 5.76927 5.78777 5.82879 5.90792 5.93676 5.97194 6.08918 6.13155 6.21781 6.23911 6.28230 6.43747 6.66646 6.89246 7.09911 7.19322 7.34079 7.38834 7.45013 7.70680 7.81748 7.88371 8.11402 9.00248 9.64035 10.72464 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003092 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.053981 B = 9053.390995 C = 9434.178427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 H 0.099 0.901 4 C 0.069 3.931 5 O -0.547 6.547 6 N -0.505 5.505 7 C 0.101 3.899 8 C -0.161 4.161 9 C -0.048 4.048 10 C -0.220 4.220 11 C 0.161 3.839 12 O -0.220 6.220 13 C -0.387 4.387 14 H 0.106 0.894 15 C 0.062 3.938 16 N -0.882 5.882 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.193 4.193 22 C -0.073 4.073 23 C 0.074 3.926 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.127 4.127 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.367 0.633 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.929 -16.455 5.777 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.034 4.034 3 H 0.117 0.883 4 C -0.009 4.009 5 O -0.350 6.350 6 N -0.229 5.229 7 C -0.025 4.025 8 C -0.162 4.162 9 C -0.067 4.067 10 C -0.239 4.239 11 C 0.109 3.891 12 O -0.126 6.126 13 C -0.462 4.462 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.520 5.520 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.212 4.212 22 C -0.092 4.092 23 C -0.034 4.034 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.157 4.157 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.212 0.788 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.325 -15.863 5.347 24.091 hybrid contribution -0.761 0.554 0.683 1.164 sum -18.086 -15.309 6.030 24.450 Atomic orbital electron populations 1.22382 0.97319 1.02033 1.02494 1.21755 0.91624 1.00076 0.89962 0.88314 1.22628 0.82320 0.99931 0.96046 1.86728 1.18720 1.76046 1.53511 1.62333 1.54666 1.03374 1.02487 1.20987 0.95867 0.92524 0.93161 1.19100 0.95404 0.94667 1.07037 1.20559 0.92208 0.96994 0.96955 1.21259 1.01247 0.94020 1.07344 1.19100 0.89068 0.87843 0.93067 1.83563 1.23610 1.37670 1.67725 1.20774 0.87511 1.02006 1.35956 0.87650 1.24455 0.94307 0.98985 0.96292 1.69652 1.05801 1.34062 1.42521 0.86187 0.79681 0.81747 0.79311 1.19936 1.20901 1.18405 1.20125 0.91852 1.00253 1.08954 1.20434 0.97661 0.92752 0.98358 1.22364 0.95624 0.90260 0.95188 1.22759 1.02440 0.93669 0.96849 1.22507 1.00324 0.97108 0.96437 1.22283 1.00566 0.96241 0.96608 1.22395 1.00802 0.96718 0.96568 0.92236 0.92063 0.91984 0.94655 0.92190 0.78821 0.95079 0.90034 0.87441 0.85123 0.91156 0.86838 0.87589 0.93733 0.89207 0.92309 0.92075 0.91774 0.92173 0.91305 0.92223 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.07 37.16 0.30 -1.44 16 2 C 0.07 0.90 2.45 -67.71 -0.17 0.74 16 3 H 0.10 1.45 5.24 -51.93 -0.27 1.18 16 4 C 0.07 0.75 5.68 37.15 0.21 0.96 16 5 O -0.55 -7.25 12.91 -35.23 -0.45 -7.70 16 6 N -0.51 -6.37 4.13 -218.82 -0.90 -7.27 16 7 C 0.10 1.36 4.73 -4.98 -0.02 1.34 16 8 C -0.16 -2.74 4.99 -104.58 -0.52 -3.26 16 9 C -0.05 -0.92 9.70 -39.61 -0.38 -1.31 16 10 C -0.22 -4.93 9.17 -39.39 -0.36 -5.30 16 11 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 12 O -0.22 -5.99 8.59 0.06 0.00 -5.99 16 13 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 14 H 0.11 3.12 5.43 -52.49 -0.29 2.83 16 15 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 16 N -0.88 -25.97 13.96 55.48 0.77 -25.20 16 17 Si 0.90 22.15 28.62 -169.99 -4.86 17.28 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.19 -3.95 9.99 -39.39 -0.39 -4.35 16 22 C -0.07 -1.28 7.97 -39.61 -0.32 -1.60 16 23 C 0.07 0.76 2.13 -66.60 -0.14 0.62 16 24 C -0.12 -1.10 4.25 -25.07 -0.11 -1.21 16 25 C -0.13 -1.03 6.91 -24.74 -0.17 -1.20 16 26 C -0.12 -1.07 6.83 -25.08 -0.17 -1.24 16 27 C -0.13 -1.26 5.82 -25.62 -0.15 -1.41 16 28 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.60 6.77 -51.93 -0.35 0.25 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.55 3.93 -51.93 -0.20 0.35 16 33 H 0.37 3.18 9.12 45.56 0.42 3.60 16 34 H 0.03 0.39 6.64 -51.93 -0.35 0.05 16 35 H 0.08 1.04 5.36 -51.93 -0.28 0.76 16 36 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.13 3.09 5.64 -52.49 -0.30 2.80 16 38 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.11 2.18 8.06 -52.48 -0.42 1.76 16 40 H 0.11 1.56 7.67 -52.48 -0.40 1.15 16 41 H 0.04 0.44 5.93 -51.93 -0.31 0.14 16 42 H 0.09 0.98 6.19 -51.93 -0.32 0.66 16 43 H 0.06 0.48 6.77 -51.93 -0.35 0.12 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.92 5.75 -51.92 -0.30 0.62 16 LS Contribution 368.56 15.07 5.55 5.55 Total: -1.00 -31.45 368.56 -8.91 -40.36 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.57 Total: 7.20 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.44 Total: -24.23 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: -0.13 Total: -32.47 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.45 Total: -13.70 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.86 Total: 17.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.45 -8.91 -40.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287981720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.551 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds