Wall clock time and date at job start Tue Mar 31 2020 13:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47127 * 2 1 4 4 C 1.52994 * 109.47260 * 120.00349 * 2 1 3 5 5 O 1.42900 * 109.47317 * 179.67969 * 4 2 1 6 6 N 1.46902 * 109.46819 * 240.00497 * 2 1 3 7 7 C 1.46894 * 111.00166 * 77.87721 * 6 2 1 8 8 C 1.50701 * 109.47228 * 68.80818 * 7 6 2 9 9 C 1.38298 * 119.93328 * 88.77054 * 8 7 6 10 10 C 1.38102 * 120.06713 * 180.02562 * 9 8 7 11 11 C 1.38877 * 119.93359 * 359.97027 * 10 9 8 12 12 O 1.35743 * 120.07055 * 180.02562 * 11 10 9 13 13 C 1.34835 * 117.00119 * 5.19718 * 12 11 10 14 14 H 1.08001 * 119.99889 * 354.93666 * 13 12 11 15 15 C 1.38655 * 120.00080 * 174.93205 * 13 12 11 16 16 N 1.31556 * 119.99792 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00108 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47022 * 89.99883 * 17 15 13 19 19 H 1.48497 * 109.47201 * 210.00199 * 17 15 13 20 20 H 1.48506 * 109.46846 * 330.00002 * 17 15 13 21 21 C 1.38877 * 119.85902 * 0.28207 * 11 10 9 22 22 C 1.38102 * 119.93059 * 359.48884 * 21 11 10 23 23 C 1.46899 * 111.00140 * 313.92062 * 6 2 1 24 24 C 1.54270 * 110.03044 * 291.57254 * 23 6 2 25 25 C 1.54892 * 104.19333 * 217.10097 * 24 23 6 26 26 C 1.54888 * 102.74662 * 37.94208 * 25 24 23 27 27 C 1.53869 * 110.03762 * 174.40404 * 23 6 2 28 28 H 1.09007 * 109.46871 * 186.47460 * 1 2 3 29 29 H 1.09005 * 109.46736 * 306.46871 * 1 2 3 30 30 H 1.08996 * 109.47141 * 66.47333 * 1 2 3 31 31 H 1.09005 * 109.47047 * 299.67899 * 4 2 1 32 32 H 1.08996 * 109.47359 * 59.67866 * 4 2 1 33 33 H 0.96699 * 114.00541 * 184.99085 * 5 4 2 34 34 H 1.08999 * 109.47231 * 308.80515 * 7 6 2 35 35 H 1.08998 * 109.47421 * 188.80880 * 7 6 2 36 36 H 1.08001 * 119.96463 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.03102 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99346 * 179.97438 * 16 15 13 39 39 H 1.08003 * 120.03182 * 179.72281 * 21 11 10 40 40 H 1.08010 * 119.96258 * 180.23212 * 22 21 11 41 41 H 1.08999 * 110.01509 * 53.00944 * 23 6 2 42 42 H 1.08998 * 110.48998 * 335.77634 * 24 23 6 43 43 H 1.09003 * 110.48811 * 98.42762 * 24 23 6 44 44 H 1.08994 * 110.75829 * 279.62559 * 25 24 23 45 45 H 1.09003 * 110.91603 * 156.32386 * 25 24 23 46 46 H 1.09003 * 110.48684 * 203.37796 * 26 25 24 47 47 H 1.09002 * 110.48823 * 80.73770 * 26 25 24 48 48 H 1.09001 * 110.03522 * 238.57487 * 27 23 6 49 49 H 1.09007 * 110.02566 * 359.97438 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4690 -0.7278 1.2454 6 7 2.0196 -0.6924 -1.1995 7 6 1.9236 0.1727 -2.3828 8 6 2.9156 1.3007 -2.2623 9 6 4.2038 1.1407 -2.7394 10 6 5.1153 2.1724 -2.6299 11 6 4.7370 3.3717 -2.0406 12 8 5.6305 4.3878 -1.9321 13 6 6.8348 4.2085 -2.5114 14 1 7.0816 3.2581 -2.9610 15 6 7.7563 5.2444 -2.5301 16 7 8.9310 5.0696 -3.0958 17 14 7.3296 6.8882 -1.7519 18 1 7.7388 6.8812 -0.3244 19 1 8.0457 7.9751 -2.4669 20 1 5.8650 7.1150 -1.8459 21 6 3.4442 3.5274 -1.5579 22 6 2.5359 2.4936 -1.6745 23 6 1.2982 -1.9546 -1.4102 24 6 1.6633 -2.9633 -0.3015 25 6 1.7095 -4.3290 -1.0308 26 6 2.3400 -3.9651 -2.3980 27 6 1.7284 -2.5916 -2.7431 28 1 -0.3633 -1.0212 0.1159 29 1 -0.3633 0.6109 0.8265 30 1 -0.3633 0.4102 -0.9422 31 1 1.6814 -0.2042 2.1392 32 1 1.6721 -1.7472 1.2520 33 1 3.8620 -1.2349 1.9690 34 1 0.9155 0.5813 -2.4533 35 1 2.1428 -0.4099 -3.2776 36 1 4.4975 0.2077 -3.1972 37 1 6.1213 2.0467 -3.0023 38 1 9.5755 5.7945 -3.1092 39 1 3.1483 4.4573 -1.0950 40 1 1.5292 2.6154 -1.3026 41 1 0.2233 -1.7740 -1.4124 42 1 2.6378 -2.7254 0.1249 43 1 0.8979 -2.9710 0.4745 44 1 0.7049 -4.7304 -1.1633 45 1 2.3389 -5.0370 -0.4916 46 1 2.0684 -4.7039 -3.1521 47 1 3.4238 -3.8890 -2.3103 48 1 0.8621 -2.7209 -3.3920 49 1 2.4722 -1.9639 -3.2339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287981720.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:48 Heat of formation + Delta-G solvation = -55.923294 kcal Electronic energy + Delta-G solvation = -27903.041905 eV Core-core repulsion = 24216.385691 eV Total energy + Delta-G solvation = -3686.656215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23346 -40.52020 -38.42417 -37.53132 -36.18719 -34.46793 -32.93402 -31.77628 -30.90428 -29.54528 -28.16413 -27.25648 -27.01396 -25.25920 -23.73243 -22.20772 -21.66087 -21.35471 -19.80718 -19.74204 -19.04665 -18.10890 -17.52770 -17.02040 -16.68600 -16.32542 -15.93517 -15.65672 -15.56354 -15.30873 -15.12077 -14.77616 -14.60643 -14.33476 -14.29262 -14.09884 -14.00821 -13.62194 -13.22322 -13.11619 -12.94945 -12.67226 -12.54145 -12.37638 -12.32639 -12.10959 -11.96407 -11.83400 -11.82648 -11.56527 -11.50772 -11.32264 -11.26699 -11.20071 -10.89074 -10.46251 -9.75259 -9.05312 -8.86381 -8.49486 -6.21918 0.59357 0.66859 1.30400 1.35577 1.51292 2.28311 2.71109 2.97181 3.13265 3.28788 3.50995 3.71401 3.84289 3.97356 4.05034 4.09335 4.18933 4.21127 4.34810 4.43454 4.53547 4.57715 4.59712 4.60810 4.64569 4.64807 4.70047 4.74382 4.80138 4.87342 4.91231 4.96107 4.99400 5.10682 5.10949 5.17025 5.24037 5.26706 5.27805 5.36846 5.39762 5.46734 5.58286 5.59520 5.77540 5.84814 5.92768 6.24800 6.31135 6.46846 6.84802 7.09043 7.59914 8.62464 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019980 B = 0.003092 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.053981 B = 9053.390995 C = 9434.178427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 H 0.070 0.930 4 C 0.067 3.933 5 O -0.580 6.580 6 N -0.521 5.521 7 C 0.103 3.897 8 C -0.135 4.135 9 C -0.054 4.054 10 C -0.236 4.236 11 C 0.120 3.880 12 O -0.247 6.247 13 C -0.399 4.399 14 H 0.078 0.922 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.192 4.192 22 C -0.063 4.063 23 C 0.075 3.925 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.383 0.617 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.285 0.715 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.864 -17.767 6.919 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.040 4.040 3 H 0.089 0.911 4 C -0.011 4.011 5 O -0.386 6.386 6 N -0.244 5.244 7 C -0.024 4.024 8 C -0.136 4.136 9 C -0.073 4.073 10 C -0.256 4.256 11 C 0.071 3.929 12 O -0.154 6.154 13 C -0.475 4.475 14 H 0.095 0.905 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.187 1.187 21 C -0.211 4.211 22 C -0.082 4.082 23 C -0.033 4.033 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.166 4.166 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.291 -17.219 6.501 28.144 hybrid contribution 0.239 0.655 0.339 0.775 sum -21.051 -16.564 6.840 27.646 Atomic orbital electron populations 1.22311 0.94974 1.03198 1.02980 1.21804 0.93500 0.98513 0.90161 0.91142 1.22759 0.81252 1.01137 0.95945 1.86668 1.20334 1.76786 1.54839 1.62242 1.56102 1.04020 1.02085 1.20981 0.95428 0.91650 0.94328 1.19616 0.94995 0.95707 1.03262 1.20790 0.92674 0.96660 0.97162 1.21239 1.00954 0.95119 1.08240 1.19618 0.90165 0.87877 0.95249 1.83501 1.23355 1.39112 1.69468 1.20702 0.88931 1.01414 1.36476 0.90465 1.25295 0.94088 1.02598 0.96920 1.69737 1.06891 1.35530 1.44431 0.85196 0.79173 0.77447 0.78740 1.19098 1.19065 1.18699 1.20453 0.90762 1.01766 1.08101 1.20867 0.98751 0.91643 0.96913 1.22448 0.96019 0.89126 0.95700 1.22718 1.01920 0.93881 0.96999 1.22494 1.01138 0.96650 0.95562 1.22283 0.99598 0.96278 0.97695 1.22414 1.00900 0.96734 0.96586 0.90845 0.91070 0.91902 0.93664 0.90232 0.76959 0.93083 0.89100 0.85732 0.87847 0.90583 0.85572 0.83640 0.92382 0.91065 0.90650 0.90593 0.91361 0.91009 0.92981 0.90789 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.07 71.98 0.58 -1.99 16 2 C 0.07 1.46 2.45 44.91 0.11 1.57 16 3 H 0.07 1.88 5.24 -2.39 -0.01 1.87 16 4 C 0.07 1.29 5.68 71.98 0.41 1.70 16 5 O -0.58 -14.72 12.91 -148.98 -1.92 -16.64 16 6 N -0.52 -11.66 4.13 -846.22 -3.49 -15.15 16 7 C 0.10 2.46 4.73 85.56 0.40 2.87 16 8 C -0.13 -4.35 4.99 -19.84 -0.10 -4.45 16 9 C -0.05 -2.08 9.70 22.25 0.22 -1.86 16 10 C -0.24 -11.22 9.17 22.39 0.21 -11.01 16 11 C 0.12 5.95 6.65 22.58 0.15 6.10 16 12 O -0.25 -14.06 8.59 -22.71 -0.19 -14.25 16 13 C -0.40 -24.55 9.95 67.92 0.68 -23.88 16 14 H 0.08 5.01 5.43 -2.91 -0.02 5.00 16 15 C 0.01 0.54 5.49 84.83 0.47 1.01 16 16 N -0.92 -56.91 13.96 21.61 0.30 -56.60 16 17 Si 0.97 46.90 28.62 68.60 1.96 48.86 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.19 -7.78 9.99 22.39 0.22 -7.55 16 22 C -0.06 -2.07 7.97 22.25 0.18 -1.89 16 23 C 0.07 1.28 2.13 45.64 0.10 1.37 16 24 C -0.12 -1.79 4.25 31.67 0.13 -1.65 16 25 C -0.12 -1.59 6.91 31.89 0.22 -1.37 16 26 C -0.12 -1.90 6.83 31.67 0.22 -1.68 16 27 C -0.13 -2.18 5.82 31.31 0.18 -2.00 16 28 H 0.07 0.88 6.38 -2.38 -0.02 0.87 16 29 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.92 6.77 -2.39 -0.02 0.90 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.20 3.93 -2.39 -0.01 1.19 16 33 H 0.38 6.30 9.12 -74.06 -0.68 5.63 16 34 H 0.05 1.06 6.64 -2.39 -0.02 1.04 16 35 H 0.09 2.06 5.36 -2.39 -0.01 2.05 16 36 H 0.12 4.27 8.06 -2.91 -0.02 4.24 16 37 H 0.10 5.40 5.64 -2.91 -0.02 5.39 16 38 H 0.28 16.00 8.31 -92.71 -0.77 15.23 16 39 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.15 3.66 7.67 -2.91 -0.02 3.64 16 41 H 0.06 0.87 5.93 -2.39 -0.01 0.86 16 42 H 0.07 1.39 6.19 -2.39 -0.01 1.38 16 43 H 0.08 0.90 6.77 -2.39 -0.02 0.88 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.06 1.32 5.75 -2.38 -0.01 1.31 16 Total: -1.00 -72.23 368.56 1.32 -70.91 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.30 Total: 27.61 kcal Atomic # 6 Polarization: -49.11 SS G_CDS: 4.37 Total: -44.74 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -3.19 Total: -71.76 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -2.12 Total: -30.90 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.96 Total: 48.86 kcal Total: -72.23 1.32 -70.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287981720.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.991 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds