Wall clock time and date at job start Tue Mar 31 2020 12:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99843 * 2 1 4 4 C 1.53002 * 109.46668 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47179 * 299.99514 * 3 2 1 6 6 N 1.46901 * 109.47180 * 300.00356 * 5 3 2 7 7 C 1.46899 * 110.99995 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47585 * 34.99900 * 7 6 5 9 9 C 1.53001 * 109.46966 * 274.99816 * 7 6 5 10 10 C 1.50704 * 109.47056 * 155.00104 * 7 6 5 11 11 C 1.38302 * 119.93181 * 39.72576 * 10 7 6 12 12 C 1.38098 * 120.06618 * 179.72973 * 11 10 7 13 13 C 1.38883 * 119.93002 * 0.54097 * 12 11 10 14 14 O 1.35756 * 120.06610 * 179.74920 * 13 12 11 15 15 C 1.34829 * 116.99492 * 174.44397 * 14 13 12 16 16 H 1.08000 * 120.00183 * 5.05453 * 15 14 13 17 17 C 1.38652 * 119.99712 * 185.06005 * 15 14 13 18 18 N 1.31562 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47233 * 89.99533 * 19 17 15 21 21 H 1.48493 * 109.46954 * 209.99783 * 19 17 15 22 22 H 1.48496 * 109.46734 * 329.99759 * 19 17 15 23 23 C 1.38878 * 119.86166 * 359.73379 * 13 12 11 24 24 C 1.38101 * 119.93147 * 359.97438 * 23 13 12 25 25 C 1.53001 * 109.47225 * 59.99826 * 3 2 1 26 26 C 1.52997 * 117.49858 * 133.62256 * 25 3 2 27 27 C 1.52995 * 117.49985 * 64.99968 * 25 3 2 28 28 H 1.09000 * 109.47336 * 300.00874 * 1 2 3 29 29 H 1.09004 * 109.46718 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47485 * 59.99966 * 4 3 2 32 32 H 1.08997 * 109.47313 * 299.99352 * 4 3 2 33 33 H 1.09001 * 109.46693 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47142 * 60.00490 * 5 3 2 35 35 H 1.09001 * 109.47344 * 180.02562 * 5 3 2 36 36 H 1.00902 * 111.00032 * 303.95436 * 6 5 3 37 37 H 1.08998 * 109.47254 * 299.99666 * 9 7 6 38 38 H 1.08999 * 109.47158 * 60.00116 * 9 7 6 39 39 H 1.09002 * 109.46735 * 180.02562 * 9 7 6 40 40 H 1.07993 * 119.96393 * 359.97438 * 11 10 7 41 41 H 1.07996 * 120.03228 * 180.27236 * 12 11 10 42 42 H 0.96999 * 119.99867 * 179.97438 * 18 17 15 43 43 H 1.08005 * 120.02863 * 179.97438 * 23 13 12 44 44 H 1.08005 * 119.96043 * 180.02562 * 24 23 13 45 45 H 1.08998 * 115.54708 * 279.33062 * 25 3 2 46 46 H 1.09004 * 117.49920 * 359.97438 * 26 25 3 47 47 H 1.08998 * 117.50347 * 145.02203 * 26 25 3 48 48 H 1.09004 * 117.50118 * 214.98005 * 27 25 3 49 49 H 1.09002 * 117.49942 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5589 2.0647 -1.2493 6 7 1.9924 1.3356 -2.4487 7 6 1.5760 2.0372 -3.6703 8 1 1.6221 3.1135 -3.5049 9 6 0.1426 1.6366 -4.0250 10 6 2.4970 1.6631 -4.8030 11 6 2.9357 0.3580 -4.9335 12 6 3.7753 0.0110 -5.9736 13 6 4.1880 0.9765 -6.8826 14 8 5.0173 0.6395 -7.9032 15 6 5.2869 1.5962 -8.8142 16 1 4.9158 2.6000 -8.6691 17 6 6.0404 1.2912 -9.9374 18 7 6.4927 0.0685 -10.1140 19 14 6.4145 2.6168 -11.1994 20 1 7.6831 3.2994 -10.8391 21 1 6.5495 1.9977 -12.5423 22 1 5.3081 3.6070 -11.2198 23 6 3.7502 2.2873 -6.7455 24 6 2.9059 2.6268 -5.7068 25 6 1.5587 2.0648 1.2492 26 6 2.6291 2.8123 2.0469 27 6 2.0161 1.5271 2.6066 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.8567 0.6440 0.8909 33 1 3.9788 2.1804 0.0002 34 1 0.4723 2.1508 -1.2493 35 1 2.0025 3.0603 -1.2495 36 1 2.9902 1.1863 -2.4401 37 1 0.0965 0.5602 -4.1906 38 1 -0.5235 1.9071 -3.2058 39 1 -0.1661 2.1568 -4.9318 40 1 2.6182 -0.3913 -4.2235 41 1 4.1140 -1.0092 -6.0775 42 1 7.0195 -0.1449 -10.9000 43 1 4.0699 3.0404 -7.4507 44 1 2.5649 3.6460 -5.6000 45 1 0.5669 2.5133 1.1938 46 1 3.6551 2.7628 1.6820 47 1 2.3417 3.7530 2.5165 48 1 1.3252 1.6222 3.4444 49 1 2.6383 0.6321 2.6097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291089910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:52 Heat of formation + Delta-G solvation = -19.082823 kcal Electronic energy + Delta-G solvation = -26923.145722 eV Core-core repulsion = 23238.087030 eV Total energy + Delta-G solvation = -3685.058692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04606 -39.11552 -37.38910 -36.31359 -35.28551 -32.45730 -31.92982 -30.19385 -29.50762 -27.90706 -26.83183 -26.12893 -25.37581 -23.31552 -22.65347 -22.17469 -21.50669 -19.94742 -19.28081 -17.91979 -17.17530 -16.93638 -16.46927 -15.77495 -15.21676 -14.97177 -14.84947 -14.48518 -14.16971 -14.05930 -13.79083 -13.66163 -13.42126 -12.97682 -12.86863 -12.69477 -12.55365 -12.43534 -12.22777 -11.90523 -11.76837 -11.71825 -11.65387 -11.48189 -11.30792 -11.17774 -10.82418 -10.72800 -10.64939 -10.62107 -10.42216 -10.35331 -10.27688 -9.49228 -9.32671 -8.82330 -8.30417 -8.15241 -7.16574 -6.44677 -4.03582 2.24184 2.31737 3.12287 3.13353 3.18149 3.32070 3.86541 3.96729 4.09069 4.47887 4.54447 4.58535 4.67704 4.76930 4.89104 5.01433 5.08846 5.17094 5.31142 5.32349 5.35012 5.36351 5.43180 5.48774 5.52518 5.54711 5.64411 5.68162 5.70397 5.72529 5.77694 5.83411 5.88333 5.90295 5.99036 6.01576 6.11657 6.25439 6.41021 6.48612 6.75351 6.88349 7.05406 7.06280 7.20241 7.28268 7.44288 7.45798 7.57941 7.84989 8.00429 9.00965 9.71671 10.73368 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025256 B = 0.002346 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.381071 B =11931.900172 C =12087.932246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.151 3.849 4 C -0.148 4.148 5 C 0.038 3.962 6 N -0.673 5.673 7 C 0.142 3.858 8 H 0.038 0.962 9 C -0.131 4.131 10 C -0.192 4.192 11 C -0.055 4.055 12 C -0.194 4.194 13 C 0.155 3.845 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.184 4.184 26 C -0.178 4.178 27 C -0.165 4.165 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.346 0.654 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 5.184 21.347 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.111 3.889 4 C -0.205 4.205 5 C -0.092 4.092 6 N -0.306 5.306 7 C 0.033 3.967 8 H 0.056 0.944 9 C -0.189 4.189 10 C -0.193 4.193 11 C -0.073 4.073 12 C -0.214 4.214 13 C 0.101 3.899 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.084 4.084 25 C -0.203 4.203 26 C -0.215 4.215 27 C -0.202 4.202 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.143 0.857 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.840 4.253 21.093 24.094 hybrid contribution 0.455 1.816 -0.688 1.994 sum -10.385 6.069 20.405 23.687 Atomic orbital electron populations 1.22646 0.81834 1.02210 0.99638 1.87978 1.19230 1.25960 1.94607 1.20884 0.93881 0.83286 0.90839 1.21913 0.92662 1.02374 1.03527 1.22502 1.00964 0.95152 0.90589 1.60558 1.20843 1.49124 1.00120 1.20149 0.94210 0.94727 0.87582 0.94385 1.21763 0.94813 1.02372 0.99917 1.19256 1.05426 0.94545 1.00116 1.20516 0.95453 0.95272 0.96061 1.20262 1.04716 0.98645 0.97758 1.19429 0.88915 0.92426 0.89095 1.83984 1.54155 1.39341 1.30660 1.21314 1.34416 0.90849 1.00216 0.89132 1.25288 0.96328 0.97564 0.97361 1.70041 1.33182 1.18401 1.28125 0.85720 0.79107 0.79427 0.79223 1.19898 1.20244 1.19238 1.21109 1.05260 0.96922 1.02136 1.20574 0.96237 0.97535 0.94094 1.22861 0.99607 1.04441 0.93343 1.23120 0.98619 0.96081 1.03632 1.22857 1.03690 0.97955 0.95703 0.94753 0.93516 0.90259 0.90861 0.91642 0.91022 0.90866 0.94590 0.83316 0.91914 0.93851 0.92747 0.86175 0.86583 0.92029 0.85681 0.87885 0.87982 0.87910 0.88942 0.89046 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.31 101.05 1.04 1.36 16 2 O -0.36 -4.14 10.19 -35.23 -0.36 -4.50 16 3 C 0.15 1.48 0.72 -90.62 -0.06 1.41 16 4 C -0.15 -1.40 7.17 37.16 0.27 -1.13 16 5 C 0.04 0.39 4.10 -3.83 -0.02 0.38 16 6 N -0.67 -8.32 5.53 -107.95 -0.60 -8.91 16 7 C 0.14 1.92 2.82 -68.86 -0.19 1.73 16 8 H 0.04 0.50 7.66 -51.93 -0.40 0.11 16 9 C -0.13 -1.66 9.39 37.16 0.35 -1.31 16 10 C -0.19 -3.22 4.72 -104.57 -0.49 -3.71 16 11 C -0.05 -0.98 8.99 -39.61 -0.36 -1.33 16 12 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 13 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 14 O -0.18 -5.11 9.76 0.03 0.00 -5.11 16 15 C -0.39 -10.98 9.49 30.89 0.29 -10.69 16 16 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 19 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 24 C -0.07 -1.19 9.66 -39.61 -0.38 -1.58 16 25 C -0.18 -1.52 4.00 -90.62 -0.36 -1.88 16 26 C -0.18 -1.28 9.65 -26.73 -0.26 -1.54 16 27 C -0.17 -1.25 9.85 -26.74 -0.26 -1.52 16 28 H 0.03 0.28 6.99 -51.93 -0.36 -0.08 16 29 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.78 6.57 -51.93 -0.34 0.43 16 32 H 0.06 0.59 6.96 -51.93 -0.36 0.23 16 33 H 0.07 0.60 6.74 -51.93 -0.35 0.25 16 34 H 0.07 0.75 5.84 -51.93 -0.30 0.44 16 35 H 0.04 0.37 8.05 -51.93 -0.42 -0.05 16 36 H 0.35 4.51 6.02 -39.29 -0.24 4.27 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 1.95 7.70 -52.49 -0.40 1.55 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 44 H 0.10 1.61 8.03 -52.48 -0.42 1.19 16 45 H 0.10 0.81 7.90 -51.93 -0.41 0.39 16 46 H 0.10 0.73 5.89 -51.93 -0.31 0.42 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.80 7.29 -51.93 -0.38 0.42 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -30.16 385.62 -8.61 -38.77 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.65 Total: 8.35 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -1.55 Total: -25.32 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.16 Total: -33.55 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.36 Total: -9.60 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.16 -8.61 -38.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291089910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.688 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds