Wall clock time and date at job start Tue Mar 31 2020 12:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99843 * 2 1 4 4 C 1.53002 * 109.46668 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47179 * 299.99514 * 3 2 1 6 6 N 1.46901 * 109.47180 * 300.00356 * 5 3 2 7 7 C 1.46899 * 110.99995 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47585 * 34.99900 * 7 6 5 9 9 C 1.53001 * 109.46966 * 274.99816 * 7 6 5 10 10 C 1.50704 * 109.47056 * 155.00104 * 7 6 5 11 11 C 1.38302 * 119.93181 * 39.72576 * 10 7 6 12 12 C 1.38098 * 120.06618 * 179.72973 * 11 10 7 13 13 C 1.38883 * 119.93002 * 0.54097 * 12 11 10 14 14 O 1.35756 * 120.06610 * 179.74920 * 13 12 11 15 15 C 1.34829 * 116.99492 * 174.44397 * 14 13 12 16 16 H 1.08000 * 120.00183 * 5.05453 * 15 14 13 17 17 C 1.38652 * 119.99712 * 185.06005 * 15 14 13 18 18 N 1.31562 * 119.99958 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47233 * 89.99533 * 19 17 15 21 21 H 1.48493 * 109.46954 * 209.99783 * 19 17 15 22 22 H 1.48496 * 109.46734 * 329.99759 * 19 17 15 23 23 C 1.38878 * 119.86166 * 359.73379 * 13 12 11 24 24 C 1.38101 * 119.93147 * 359.97438 * 23 13 12 25 25 C 1.53001 * 109.47225 * 59.99826 * 3 2 1 26 26 C 1.52997 * 117.49858 * 133.62256 * 25 3 2 27 27 C 1.52995 * 117.49985 * 64.99968 * 25 3 2 28 28 H 1.09000 * 109.47336 * 300.00874 * 1 2 3 29 29 H 1.09004 * 109.46718 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47485 * 59.99966 * 4 3 2 32 32 H 1.08997 * 109.47313 * 299.99352 * 4 3 2 33 33 H 1.09001 * 109.46693 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47142 * 60.00490 * 5 3 2 35 35 H 1.09001 * 109.47344 * 180.02562 * 5 3 2 36 36 H 1.00902 * 111.00032 * 303.95436 * 6 5 3 37 37 H 1.08998 * 109.47254 * 299.99666 * 9 7 6 38 38 H 1.08999 * 109.47158 * 60.00116 * 9 7 6 39 39 H 1.09002 * 109.46735 * 180.02562 * 9 7 6 40 40 H 1.07993 * 119.96393 * 359.97438 * 11 10 7 41 41 H 1.07996 * 120.03228 * 180.27236 * 12 11 10 42 42 H 0.96999 * 119.99867 * 179.97438 * 18 17 15 43 43 H 1.08005 * 120.02863 * 179.97438 * 23 13 12 44 44 H 1.08005 * 119.96043 * 180.02562 * 24 23 13 45 45 H 1.08998 * 115.54708 * 279.33062 * 25 3 2 46 46 H 1.09004 * 117.49920 * 359.97438 * 26 25 3 47 47 H 1.08998 * 117.50347 * 145.02203 * 26 25 3 48 48 H 1.09004 * 117.50118 * 214.98005 * 27 25 3 49 49 H 1.09002 * 117.49942 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 1.5589 2.0647 -1.2493 6 7 1.9924 1.3356 -2.4487 7 6 1.5760 2.0372 -3.6703 8 1 1.6221 3.1135 -3.5049 9 6 0.1426 1.6366 -4.0250 10 6 2.4970 1.6631 -4.8030 11 6 2.9357 0.3580 -4.9335 12 6 3.7753 0.0110 -5.9736 13 6 4.1880 0.9765 -6.8826 14 8 5.0173 0.6395 -7.9032 15 6 5.2869 1.5962 -8.8142 16 1 4.9158 2.6000 -8.6691 17 6 6.0404 1.2912 -9.9374 18 7 6.4927 0.0685 -10.1140 19 14 6.4145 2.6168 -11.1994 20 1 7.6831 3.2994 -10.8391 21 1 6.5495 1.9977 -12.5423 22 1 5.3081 3.6070 -11.2198 23 6 3.7502 2.2873 -6.7455 24 6 2.9059 2.6268 -5.7068 25 6 1.5587 2.0648 1.2492 26 6 2.6291 2.8123 2.0469 27 6 2.0161 1.5271 2.6066 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8575 0.6435 -0.8891 32 1 3.8567 0.6440 0.8909 33 1 3.9788 2.1804 0.0002 34 1 0.4723 2.1508 -1.2493 35 1 2.0025 3.0603 -1.2495 36 1 2.9902 1.1863 -2.4401 37 1 0.0965 0.5602 -4.1906 38 1 -0.5235 1.9071 -3.2058 39 1 -0.1661 2.1568 -4.9318 40 1 2.6182 -0.3913 -4.2235 41 1 4.1140 -1.0092 -6.0775 42 1 7.0195 -0.1449 -10.9000 43 1 4.0699 3.0404 -7.4507 44 1 2.5649 3.6460 -5.6000 45 1 0.5669 2.5133 1.1938 46 1 3.6551 2.7628 1.6820 47 1 2.3417 3.7530 2.5165 48 1 1.3252 1.6222 3.4444 49 1 2.6383 0.6321 2.6097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291089910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:51 Heat of formation + Delta-G solvation = -36.935992 kcal Electronic energy + Delta-G solvation = -26923.919893 eV Core-core repulsion = 23238.087030 eV Total energy + Delta-G solvation = -3685.832863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99510 -40.60192 -38.90436 -37.06965 -36.54420 -34.30010 -33.06527 -31.80834 -30.55882 -29.27609 -27.68184 -27.33070 -26.86534 -24.29433 -23.75943 -23.26854 -22.74607 -21.31160 -20.02495 -19.75472 -18.85781 -17.69322 -17.59542 -16.74221 -16.35249 -16.22891 -15.91943 -15.86455 -15.54036 -15.46416 -15.26958 -14.87461 -14.50414 -14.40558 -14.03253 -13.86465 -13.66310 -13.52491 -13.47463 -13.20654 -13.01567 -12.78643 -12.55991 -12.52140 -12.44490 -12.29805 -12.16818 -12.10816 -12.07224 -11.67742 -11.39984 -11.24672 -11.17581 -11.00570 -10.78693 -10.25864 -9.77099 -9.27272 -8.90797 -8.46943 -6.15171 0.60609 0.68802 1.34688 1.44061 1.52385 2.17679 2.66210 2.82058 3.11978 3.19048 3.31703 3.52875 3.69393 3.88729 3.90241 4.02102 4.11320 4.13319 4.21500 4.23331 4.37906 4.42536 4.55097 4.59964 4.63577 4.66691 4.72500 4.75273 4.76071 4.85171 4.89396 4.92429 4.97737 5.00685 5.05575 5.07041 5.13091 5.15764 5.21575 5.29343 5.29909 5.38397 5.44755 5.58570 5.71570 5.73201 6.03166 6.19263 6.25645 6.40770 6.56328 6.97710 7.79184 8.76385 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025256 B = 0.002346 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.381071 B =11931.900172 C =12087.932246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.151 3.849 4 C -0.148 4.148 5 C 0.041 3.959 6 N -0.677 5.677 7 C 0.146 3.854 8 H 0.054 0.946 9 C -0.128 4.128 10 C -0.163 4.163 11 C -0.045 4.045 12 C -0.205 4.205 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.413 4.413 16 H 0.102 0.898 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.253 1.253 23 C -0.241 4.241 24 C -0.063 4.063 25 C -0.188 4.188 26 C -0.172 4.172 27 C -0.167 4.167 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.342 0.658 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.139 0.861 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 7.663 23.509 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.112 3.888 4 C -0.205 4.205 5 C -0.089 4.089 6 N -0.310 5.310 7 C 0.037 3.963 8 H 0.072 0.928 9 C -0.186 4.186 10 C -0.164 4.164 11 C -0.063 4.063 12 C -0.225 4.225 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.489 4.489 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.261 4.261 24 C -0.081 4.081 25 C -0.207 4.207 26 C -0.209 4.209 27 C -0.204 4.204 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.159 0.841 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.872 6.746 23.315 27.473 hybrid contribution 0.864 1.026 -1.009 1.678 sum -12.008 7.772 22.306 26.498 Atomic orbital electron populations 1.22716 0.80942 1.02669 1.00104 1.87954 1.20340 1.27091 1.94759 1.20906 0.93726 0.82871 0.91325 1.21931 0.92899 1.02837 1.02849 1.22537 1.01341 0.95217 0.89777 1.60563 1.20603 1.49470 1.00413 1.20171 0.93727 0.95734 0.86652 0.92826 1.21731 0.94353 1.01651 1.00860 1.19735 1.03352 0.93472 0.99866 1.20734 0.94025 0.96543 0.95013 1.20468 1.05463 0.98165 0.98377 1.19940 0.90054 0.94334 0.89247 1.83949 1.57032 1.40489 1.32511 1.21815 1.34851 0.91439 1.00789 0.88106 1.26605 0.95859 1.00264 0.99433 1.70191 1.35275 1.21101 1.29398 0.84583 0.79471 0.76250 0.75879 1.18762 1.19629 1.17648 1.21214 1.05943 0.95712 1.03203 1.20930 0.94833 0.99597 0.92742 1.22805 1.00237 1.04866 0.92820 1.23188 0.98356 0.96376 1.02937 1.22884 1.03834 0.97909 0.95730 0.93505 0.93713 0.89948 0.92324 0.91558 0.89901 0.90195 0.93894 0.83783 0.93017 0.91715 0.92652 0.84055 0.87257 0.91861 0.86369 0.84317 0.87300 0.87892 0.87769 0.88014 0.89191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.31 113.37 1.17 1.70 16 2 O -0.38 -8.05 10.19 -148.98 -1.52 -9.57 16 3 C 0.15 2.59 0.72 -10.79 -0.01 2.58 16 4 C -0.15 -2.55 7.17 71.98 0.52 -2.03 16 5 C 0.04 0.71 4.10 86.30 0.35 1.06 16 6 N -0.68 -14.67 5.53 -495.45 -2.74 -17.41 16 7 C 0.15 3.40 2.82 44.17 0.12 3.52 16 8 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 9 C -0.13 -2.77 9.39 71.98 0.68 -2.09 16 10 C -0.16 -5.04 4.72 -19.83 -0.09 -5.13 16 11 C -0.04 -1.55 8.99 22.25 0.20 -1.35 16 12 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 13 C 0.11 5.77 6.65 22.58 0.15 5.92 16 14 O -0.23 -14.22 9.76 -22.80 -0.22 -14.44 16 15 C -0.41 -24.24 9.49 67.92 0.64 -23.60 16 16 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 17 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 18 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 19 Si 1.02 43.09 29.55 68.60 2.03 45.11 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.24 -10.51 9.17 22.39 0.21 -10.30 16 24 C -0.06 -2.13 9.66 22.25 0.21 -1.91 16 25 C -0.19 -2.58 4.00 -10.80 -0.04 -2.63 16 26 C -0.17 -2.01 9.65 30.59 0.30 -1.71 16 27 C -0.17 -2.14 9.85 30.59 0.30 -1.84 16 28 H 0.05 0.64 6.99 -2.39 -0.02 0.62 16 29 H 0.04 0.74 6.42 -2.39 -0.02 0.72 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.17 6.57 -2.39 -0.02 1.16 16 32 H 0.07 1.11 6.96 -2.39 -0.02 1.09 16 33 H 0.08 1.20 6.74 -2.39 -0.02 1.19 16 34 H 0.08 1.31 5.84 -2.39 -0.01 1.30 16 35 H 0.04 0.72 8.05 -2.39 -0.02 0.70 16 36 H 0.34 8.05 6.02 -89.69 -0.54 7.51 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.15 7.45 -2.39 -0.02 1.14 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.14 4.32 7.70 -2.91 -0.02 4.30 16 41 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 44 H 0.14 3.76 8.03 -2.91 -0.02 3.74 16 45 H 0.11 1.36 7.90 -2.39 -0.02 1.34 16 46 H 0.10 1.20 5.89 -2.38 -0.01 1.18 16 47 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 49 H 0.09 1.32 7.29 -2.39 -0.02 1.31 16 Total: -1.00 -69.48 385.62 3.65 -65.83 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.41 Total: 34.81 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 5.40 Total: -47.48 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.44 Total: -74.26 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.74 Total: -24.01 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.48 3.65 -65.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291089910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.889 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds