Wall clock time and date at job start Tue Mar 31 2020 12:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 117.00321 * 2 1 4 4 C 1.38699 * 119.97961 * 180.02562 * 3 2 1 5 5 C 1.38109 * 120.01631 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.98234 * 359.97438 * 5 4 3 7 7 N 1.39940 * 120.01878 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99912 * 184.87541 * 7 6 5 9 9 C 1.53001 * 109.47037 * 270.00181 * 8 7 6 10 10 O 1.42899 * 109.46960 * 65.00379 * 9 8 7 11 11 C 1.42901 * 114.00143 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47528 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00245 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00275 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99664 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00401 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47013 * 89.99636 * 16 14 12 18 18 H 1.48496 * 109.47434 * 209.99688 * 16 14 12 19 19 H 1.48504 * 109.47137 * 330.00241 * 16 14 12 20 20 C 1.46497 * 120.00283 * 4.88079 * 7 6 5 21 21 H 1.09005 * 109.46774 * 354.50787 * 20 7 6 22 22 C 1.52997 * 109.47119 * 234.50499 * 20 7 6 23 23 C 1.53000 * 109.47542 * 114.50481 * 20 7 6 24 24 C 1.52995 * 117.50030 * 185.00413 * 23 20 7 25 25 C 1.53002 * 117.50074 * 116.37600 * 23 20 7 26 26 C 1.38861 * 119.95899 * 0.27674 * 6 5 4 27 27 C 1.38104 * 119.98139 * 359.46775 * 26 6 5 28 28 H 1.09003 * 109.46634 * 299.99966 * 1 2 3 29 29 H 1.08996 * 109.47083 * 59.99285 * 1 2 3 30 30 H 1.08991 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99482 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.00820 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47184 * 30.00109 * 8 7 6 34 34 H 1.09001 * 109.46991 * 150.00287 * 8 7 6 35 35 H 1.09002 * 109.46887 * 184.99428 * 9 8 7 36 36 H 1.08993 * 109.47549 * 304.99847 * 9 8 7 37 37 H 1.09008 * 109.46638 * 300.00078 * 11 10 9 38 38 H 1.08999 * 109.46990 * 59.99424 * 11 10 9 39 39 H 0.97003 * 119.99689 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.47430 * 299.99668 * 22 20 7 41 41 H 1.09003 * 109.46938 * 59.99691 * 22 20 7 42 42 H 1.08997 * 109.47451 * 179.97438 * 22 20 7 43 43 H 1.09006 * 115.55636 * 330.68920 * 23 20 7 44 44 H 1.09000 * 117.49765 * 145.02528 * 24 23 20 45 45 H 1.09000 * 117.50182 * 359.97438 * 24 23 20 46 46 H 1.08994 * 117.49258 * 0.02562 * 25 23 20 47 47 H 1.09002 * 117.49809 * 214.98234 * 25 23 20 48 48 H 1.08006 * 120.00938 * 179.70777 * 26 6 5 49 49 H 1.08004 * 119.99386 * 180.25653 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0595 2.5139 0.0000 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1453 6.1523 0.1089 9 6 2.7592 6.6352 -1.2906 10 8 1.8932 5.6774 -1.9028 11 6 1.4707 6.0345 -3.2204 12 6 0.5672 4.9594 -3.7670 13 1 0.3381 4.0904 -3.1679 14 6 0.0322 5.0854 -5.0314 15 7 0.3099 6.1443 -5.7604 16 14 -1.0872 3.7524 -5.7092 17 1 -2.4955 4.0599 -5.3524 18 1 -0.9518 3.6964 -7.1869 19 1 -0.7042 2.4410 -5.1269 20 6 5.3979 5.0044 -0.1080 21 1 5.8190 3.9994 -0.0806 22 6 5.9528 5.8219 1.0602 23 6 5.7755 5.6798 -1.4279 24 6 7.2615 5.7521 -1.7846 25 6 6.5164 7.0162 -1.3510 26 6 1.9170 3.6057 0.0063 27 6 1.2908 2.3748 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0194 0.3778 -0.0014 32 1 5.1381 2.5699 0.0000 33 1 2.2426 5.9511 0.6858 34 1 3.7326 6.9220 0.6097 35 1 2.2454 7.5936 -1.2153 36 1 3.6582 6.7514 -1.8958 37 1 0.9302 6.9804 -3.1848 38 1 2.3428 6.1385 -3.8659 39 1 -0.0668 6.2332 -6.6498 40 1 5.5317 6.8269 1.0328 41 1 5.6837 5.3408 2.0005 42 1 7.0382 5.8802 0.9798 43 1 5.0676 5.5430 -2.2455 44 1 7.5314 5.6631 -2.8370 45 1 7.9702 5.3189 -1.0788 46 1 6.7352 7.4140 -0.3601 47 1 6.2961 7.7587 -2.1181 48 1 1.3283 4.5112 0.0115 49 1 0.2122 2.3177 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292793717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:00 Heat of formation + Delta-G solvation = -16.688531 kcal Electronic energy + Delta-G solvation = -28114.234884 eV Core-core repulsion = 24429.280017 eV Total energy + Delta-G solvation = -3684.954868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.96566 -38.94946 -37.19948 -36.55004 -34.72091 -32.70162 -31.20618 -30.14528 -29.94185 -27.69910 -26.87521 -26.25448 -24.60503 -22.65058 -22.38526 -22.27368 -21.61535 -20.47920 -19.03271 -17.95927 -16.91995 -16.42472 -16.25465 -15.64762 -15.37163 -15.34577 -14.95947 -14.74090 -14.35038 -14.17080 -13.84919 -13.67002 -13.20022 -13.09921 -12.79557 -12.59664 -12.33137 -12.09735 -12.01871 -11.91249 -11.66839 -11.48395 -11.41224 -11.25712 -11.04963 -10.85489 -10.76385 -10.75207 -10.55100 -10.37131 -10.18460 -10.03636 -9.76427 -9.06944 -8.88976 -8.76515 -8.49663 -8.12308 -6.58431 -6.08864 -4.09453 1.84210 2.10893 3.30140 3.32988 3.35599 3.41457 3.70832 3.86942 4.32116 4.36517 4.72277 4.80770 4.92331 5.03436 5.09495 5.18384 5.21553 5.27955 5.29126 5.34424 5.39590 5.46485 5.55319 5.61121 5.65151 5.65646 5.71803 5.79270 5.81689 5.84864 5.89469 6.01993 6.03939 6.12616 6.13113 6.14749 6.30542 6.41965 6.46385 6.53165 6.78016 6.95491 7.07357 7.13325 7.45432 7.70471 7.73309 7.82797 8.01256 8.18886 8.62300 9.04706 9.55258 11.02769 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.005659 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.019041 B = 4946.749294 C = 7532.195899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.327 6.327 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.167 4.167 6 C 0.196 3.804 7 N -0.615 5.615 8 C 0.130 3.870 9 C 0.036 3.964 10 O -0.382 6.382 11 C 0.198 3.802 12 C -0.506 4.506 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.180 3.820 21 H 0.092 0.908 22 C -0.165 4.165 23 C -0.164 4.164 24 C -0.179 4.179 25 C -0.185 4.185 26 C -0.115 4.115 27 C -0.157 4.157 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.001 0.999 38 H 0.000 1.000 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.134 0.866 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -2.854 14.679 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.242 6.242 3 C 0.017 3.983 4 C -0.132 4.132 5 C -0.189 4.189 6 C 0.096 3.904 7 N -0.327 5.327 8 C 0.007 3.993 9 C -0.043 4.043 10 O -0.302 6.302 11 C 0.124 3.876 12 C -0.545 4.545 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.540 5.540 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.076 3.924 21 H 0.109 0.891 22 C -0.223 4.223 23 C -0.183 4.183 24 C -0.216 4.216 25 C -0.221 4.221 26 C -0.137 4.137 27 C -0.176 4.176 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.152 0.848 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.867 -2.991 14.604 17.877 hybrid contribution -0.818 0.006 -1.050 1.331 sum 9.049 -2.985 13.555 16.569 Atomic orbital electron populations 1.22928 0.79280 1.03000 1.01297 1.85985 1.20628 1.27443 1.90118 1.18742 0.92151 0.83870 1.03533 1.19963 0.91164 0.97429 1.04691 1.20384 0.98858 0.90594 1.09093 1.17623 0.91559 0.84857 0.96314 1.46301 1.03677 1.02569 1.80118 1.21420 0.95340 0.86558 0.95976 1.22932 0.94392 0.92516 0.94442 1.87916 1.64953 1.44640 1.32704 1.20121 0.93733 0.95917 0.77867 1.21026 1.27780 1.05826 0.99843 0.91633 1.24925 0.96877 0.96145 0.96533 1.69967 1.44970 1.28127 1.10915 0.86408 0.80629 0.81969 0.77963 1.20523 1.21121 1.19611 1.20397 0.80731 0.99402 0.91860 0.89057 1.22284 1.00697 1.00915 0.98361 1.23028 0.94894 1.00092 1.00308 1.22924 0.94562 1.02193 1.01927 1.23123 1.04816 0.91357 1.02851 1.20605 0.92557 0.97799 1.02700 1.20987 0.99537 0.91907 1.05212 0.93206 0.92671 0.89055 0.86131 0.86019 0.90624 0.90342 0.94576 0.93748 0.98162 0.98241 0.92787 0.91858 0.92225 0.91816 0.86713 0.88960 0.89040 0.88361 0.89158 0.84812 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.33 -5.21 10.50 -19.76 -0.21 -5.41 16 3 C 0.06 1.05 6.69 -39.24 -0.26 0.79 16 4 C -0.11 -1.79 9.98 -39.46 -0.39 -2.18 16 5 C -0.17 -2.56 9.31 -39.40 -0.37 -2.93 16 6 C 0.20 3.23 6.35 -83.70 -0.53 2.70 16 7 N -0.61 -8.89 2.52 -164.13 -0.41 -9.30 16 8 C 0.13 1.85 5.39 -4.04 -0.02 1.83 16 9 C 0.04 0.64 6.10 37.16 0.23 0.87 16 10 O -0.38 -8.78 7.72 -35.23 -0.27 -9.05 16 11 C 0.20 5.39 5.69 36.00 0.20 5.59 16 12 C -0.51 -14.88 9.43 -34.44 -0.32 -15.20 16 13 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.18 2.16 2.96 -67.93 -0.20 1.96 16 21 H 0.09 1.07 5.31 -51.93 -0.28 0.80 16 22 C -0.16 -1.55 7.63 37.16 0.28 -1.26 16 23 C -0.16 -2.10 4.43 -90.62 -0.40 -2.50 16 24 C -0.18 -1.90 9.95 -26.73 -0.27 -2.16 16 25 C -0.18 -1.99 9.50 -26.73 -0.25 -2.24 16 26 C -0.11 -2.04 7.97 -39.40 -0.31 -2.36 16 27 C -0.16 -2.71 9.03 -39.46 -0.36 -3.06 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.12 1.58 5.73 -52.48 -0.30 1.28 16 33 H 0.08 1.08 6.40 -51.93 -0.33 0.74 16 34 H 0.08 0.90 6.15 -51.93 -0.32 0.58 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.80 5.51 -51.93 -0.29 0.51 16 37 H 0.00 0.02 8.14 -51.92 -0.42 -0.41 16 38 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 0.58 5.60 -51.93 -0.29 0.29 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 43 H 0.11 1.91 6.87 -51.93 -0.36 1.56 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.83 7.93 -51.93 -0.41 0.41 16 46 H 0.10 0.91 5.82 -51.93 -0.30 0.61 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.13 2.47 5.26 -52.48 -0.28 2.19 16 49 H 0.12 1.93 6.29 -52.48 -0.33 1.60 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -32.24 381.11 -9.10 -41.34 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.58 Total: 3.23 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.09 Total: -17.25 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.32 Total: -35.73 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.48 Total: -14.47 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.24 -9.10 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292793717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.652 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds