Wall clock time and date at job start Tue Mar 31 2020 12:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 117.00321 * 2 1 4 4 C 1.38699 * 119.97961 * 180.02562 * 3 2 1 5 5 C 1.38109 * 120.01631 * 180.02562 * 4 3 2 6 6 C 1.38860 * 119.98234 * 359.97438 * 5 4 3 7 7 N 1.39940 * 120.01878 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99912 * 184.87541 * 7 6 5 9 9 C 1.53001 * 109.47037 * 270.00181 * 8 7 6 10 10 O 1.42899 * 109.46960 * 65.00379 * 9 8 7 11 11 C 1.42901 * 114.00143 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47528 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00245 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00275 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99664 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00401 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47013 * 89.99636 * 16 14 12 18 18 H 1.48496 * 109.47434 * 209.99688 * 16 14 12 19 19 H 1.48504 * 109.47137 * 330.00241 * 16 14 12 20 20 C 1.46497 * 120.00283 * 4.88079 * 7 6 5 21 21 H 1.09005 * 109.46774 * 354.50787 * 20 7 6 22 22 C 1.52997 * 109.47119 * 234.50499 * 20 7 6 23 23 C 1.53000 * 109.47542 * 114.50481 * 20 7 6 24 24 C 1.52995 * 117.50030 * 185.00413 * 23 20 7 25 25 C 1.53002 * 117.50074 * 116.37600 * 23 20 7 26 26 C 1.38861 * 119.95899 * 0.27674 * 6 5 4 27 27 C 1.38104 * 119.98139 * 359.46775 * 26 6 5 28 28 H 1.09003 * 109.46634 * 299.99966 * 1 2 3 29 29 H 1.08996 * 109.47083 * 59.99285 * 1 2 3 30 30 H 1.08991 * 109.47469 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99482 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.00820 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47184 * 30.00109 * 8 7 6 34 34 H 1.09001 * 109.46991 * 150.00287 * 8 7 6 35 35 H 1.09002 * 109.46887 * 184.99428 * 9 8 7 36 36 H 1.08993 * 109.47549 * 304.99847 * 9 8 7 37 37 H 1.09008 * 109.46638 * 300.00078 * 11 10 9 38 38 H 1.08999 * 109.46990 * 59.99424 * 11 10 9 39 39 H 0.97003 * 119.99689 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.47430 * 299.99668 * 22 20 7 41 41 H 1.09003 * 109.46938 * 59.99691 * 22 20 7 42 42 H 1.08997 * 109.47451 * 179.97438 * 22 20 7 43 43 H 1.09006 * 115.55636 * 330.68920 * 23 20 7 44 44 H 1.09000 * 117.49765 * 145.02528 * 24 23 20 45 45 H 1.09000 * 117.50182 * 359.97438 * 24 23 20 46 46 H 1.08994 * 117.49258 * 0.02562 * 25 23 20 47 47 H 1.09002 * 117.49809 * 214.98234 * 25 23 20 48 48 H 1.08006 * 120.00938 * 179.70777 * 26 6 5 49 49 H 1.08004 * 119.99386 * 180.25653 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4316 1.2838 -0.0005 5 6 4.0595 2.5139 0.0000 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1453 6.1523 0.1089 9 6 2.7592 6.6352 -1.2906 10 8 1.8932 5.6774 -1.9028 11 6 1.4707 6.0345 -3.2204 12 6 0.5672 4.9594 -3.7670 13 1 0.3381 4.0904 -3.1679 14 6 0.0322 5.0854 -5.0314 15 7 0.3099 6.1443 -5.7604 16 14 -1.0872 3.7524 -5.7092 17 1 -2.4955 4.0599 -5.3524 18 1 -0.9518 3.6964 -7.1869 19 1 -0.7042 2.4410 -5.1269 20 6 5.3979 5.0044 -0.1080 21 1 5.8190 3.9994 -0.0806 22 6 5.9528 5.8219 1.0602 23 6 5.7755 5.6798 -1.4279 24 6 7.2615 5.7521 -1.7846 25 6 6.5164 7.0162 -1.3510 26 6 1.9170 3.6057 0.0063 27 6 1.2908 2.3748 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0194 0.3778 -0.0014 32 1 5.1381 2.5699 0.0000 33 1 2.2426 5.9511 0.6858 34 1 3.7326 6.9220 0.6097 35 1 2.2454 7.5936 -1.2153 36 1 3.6582 6.7514 -1.8958 37 1 0.9302 6.9804 -3.1848 38 1 2.3428 6.1385 -3.8659 39 1 -0.0668 6.2332 -6.6498 40 1 5.5317 6.8269 1.0328 41 1 5.6837 5.3408 2.0005 42 1 7.0382 5.8802 0.9798 43 1 5.0676 5.5430 -2.2455 44 1 7.5314 5.6631 -2.8370 45 1 7.9702 5.3189 -1.0788 46 1 6.7352 7.4140 -0.3601 47 1 6.2961 7.7587 -2.1181 48 1 1.3283 4.5112 0.0115 49 1 0.2122 2.3177 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292793717.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:00 Heat of formation + Delta-G solvation = -34.379862 kcal Electronic energy + Delta-G solvation = -28115.002038 eV Core-core repulsion = 24429.280017 eV Total energy + Delta-G solvation = -3685.722021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14544 -40.06147 -38.41798 -38.16225 -35.94330 -34.87846 -32.41234 -31.33409 -31.19350 -29.32580 -28.43077 -27.37216 -25.72507 -24.50847 -23.87904 -23.21351 -22.87774 -21.68568 -20.06731 -19.17336 -18.63295 -18.08017 -17.50848 -17.11642 -16.66451 -16.49227 -16.41566 -16.34198 -15.73226 -15.56149 -15.18389 -15.08631 -14.42475 -14.34223 -14.11103 -13.90424 -13.59105 -13.48735 -13.21053 -13.04545 -12.93876 -12.91128 -12.73999 -12.67785 -12.46776 -12.31577 -12.24478 -12.00019 -11.89224 -11.76598 -11.49578 -11.27501 -11.21774 -10.89979 -10.68879 -10.13322 -10.08737 -9.77518 -8.34177 -7.79546 -6.44665 0.56537 0.83364 1.34221 1.36923 1.48855 2.22967 2.31404 2.60085 2.95313 2.99843 3.05225 3.26451 3.78945 3.92468 3.97504 4.09309 4.11226 4.21394 4.27162 4.33374 4.37659 4.40806 4.42623 4.49668 4.57137 4.61142 4.66594 4.70562 4.75343 4.78363 4.81342 4.87902 4.91164 4.96331 4.98532 5.10787 5.18084 5.23072 5.26718 5.29431 5.37910 5.42407 5.52623 5.54662 5.66195 5.83843 5.96922 6.50725 6.53989 6.60899 6.80472 6.85976 7.27229 8.78366 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.005659 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.019041 B = 4946.749294 C = 7532.195899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.048 3.952 4 C -0.117 4.117 5 C -0.166 4.166 6 C 0.185 3.815 7 N -0.615 5.615 8 C 0.139 3.861 9 C 0.028 3.972 10 O -0.388 6.388 11 C 0.216 3.784 12 C -0.534 4.534 13 H 0.057 0.943 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.975 3.025 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.269 1.269 20 C 0.179 3.821 21 H 0.095 0.905 22 C -0.157 4.157 23 C -0.184 4.184 24 C -0.165 4.165 25 C -0.174 4.174 26 C -0.139 4.139 27 C -0.171 4.171 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.042 0.958 36 H 0.041 0.959 37 H -0.019 1.019 38 H -0.028 1.028 39 H 0.269 0.731 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.079 0.921 48 H 0.118 0.882 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 -3.665 15.923 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.254 6.254 3 C 0.003 3.997 4 C -0.136 4.136 5 C -0.188 4.188 6 C 0.085 3.915 7 N -0.327 5.327 8 C 0.015 3.985 9 C -0.050 4.050 10 O -0.307 6.307 11 C 0.141 3.859 12 C -0.572 4.572 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.798 3.202 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.193 1.193 20 C 0.076 3.924 21 H 0.113 0.887 22 C -0.214 4.214 23 C -0.203 4.203 24 C -0.203 4.203 25 C -0.211 4.211 26 C -0.161 4.161 27 C -0.190 4.190 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.059 0.941 37 H -0.002 1.002 38 H -0.010 1.010 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.097 0.903 48 H 0.136 0.864 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.118 -3.785 15.865 19.739 hybrid contribution -1.153 0.300 -1.444 1.872 sum 9.965 -3.485 14.421 17.872 Atomic orbital electron populations 1.23163 0.77680 1.04962 1.01265 1.85962 1.22355 1.26949 1.90087 1.18941 0.92827 0.84042 1.03919 1.20319 0.91076 0.98470 1.03767 1.20678 1.00088 0.89985 1.08062 1.17827 0.91358 0.86223 0.96128 1.46470 1.04834 1.01825 1.79524 1.21424 0.96147 0.87564 0.93367 1.23289 0.93331 0.92136 0.96258 1.87908 1.65979 1.46249 1.30568 1.19661 0.92090 0.94586 0.79556 1.21295 1.29009 1.06209 1.00705 0.92445 1.25884 0.98121 0.98578 0.96509 1.70074 1.45754 1.29892 1.11418 0.85308 0.78812 0.78617 0.77495 1.18960 1.19953 1.19304 1.20596 0.79137 1.00181 0.92480 0.88693 1.22231 1.01896 1.00397 0.96916 1.22804 0.95445 1.02582 0.99487 1.23015 0.93282 1.01673 1.02300 1.23193 1.03523 0.90566 1.03803 1.20594 0.93419 0.97457 1.04634 1.21116 1.00006 0.92190 1.05724 0.92075 0.93877 0.86108 0.84084 0.83529 0.90750 0.86648 0.94016 0.94084 1.00169 1.01043 0.92206 0.91469 0.91800 0.89633 0.91574 0.89664 0.86438 0.85908 0.90284 0.86383 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -10.61 10.50 -93.63 -0.98 -11.59 16 3 C 0.05 1.63 6.69 22.49 0.15 1.78 16 4 C -0.12 -3.60 9.98 22.35 0.22 -3.38 16 5 C -0.17 -4.94 9.31 22.39 0.21 -4.73 16 6 C 0.19 6.12 6.35 38.14 0.24 6.36 16 7 N -0.62 -17.42 2.52 -673.18 -1.69 -19.12 16 8 C 0.14 3.87 5.39 86.38 0.47 4.33 16 9 C 0.03 1.04 6.10 71.98 0.44 1.48 16 10 O -0.39 -18.70 7.72 -148.98 -1.15 -19.85 16 11 C 0.22 12.42 5.69 71.23 0.41 12.82 16 12 C -0.53 -32.53 9.43 25.60 0.24 -32.29 16 13 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 14 C 0.01 0.43 5.46 84.65 0.46 0.89 16 15 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 16 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 17 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.18 3.97 2.96 44.99 0.13 4.11 16 21 H 0.10 2.01 5.31 -2.38 -0.01 1.99 16 22 C -0.16 -2.38 7.63 71.98 0.55 -1.83 16 23 C -0.18 -4.58 4.43 -10.79 -0.05 -4.63 16 24 C -0.17 -3.20 9.95 30.60 0.30 -2.89 16 25 C -0.17 -3.44 9.50 30.60 0.29 -3.15 16 26 C -0.14 -5.11 7.97 22.39 0.18 -4.93 16 27 C -0.17 -6.08 9.03 22.35 0.20 -5.87 16 28 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 29 H 0.04 1.13 7.66 -2.39 -0.02 1.11 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.15 3.50 5.73 -2.91 -0.02 3.49 16 33 H 0.07 2.12 6.40 -2.38 -0.02 2.11 16 34 H 0.12 2.38 6.15 -2.39 -0.01 2.37 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.55 5.51 -2.39 -0.01 1.53 16 37 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 38 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.07 0.98 5.60 -2.39 -0.01 0.96 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.97 7.18 -2.39 -0.02 0.95 16 43 H 0.07 2.33 6.87 -2.38 -0.02 2.31 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.12 1.68 7.93 -2.39 -0.02 1.66 16 46 H 0.12 1.83 5.82 -2.39 -0.01 1.81 16 47 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.12 4.60 5.26 -2.91 -0.02 4.59 16 49 H 0.13 4.14 6.29 -2.91 -0.02 4.13 16 Total: -1.00 -72.38 381.11 4.99 -67.39 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.95 Total: 22.65 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 5.56 Total: -30.25 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.41 Total: -76.16 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -2.13 Total: -31.44 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.38 4.99 -67.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292793717.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.007 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds