Wall clock time and date at job start Tue Mar 31 2020 12:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47073 * 2 1 4 4 O 1.42905 * 109.47217 * 120.00020 * 2 1 3 5 5 C 1.52998 * 109.47323 * 239.99655 * 2 1 3 6 6 C 1.53002 * 109.47382 * 182.87614 * 5 2 1 7 7 C 1.53002 * 109.46712 * 62.88316 * 5 2 1 8 8 N 1.46495 * 109.47731 * 59.99967 * 7 5 2 9 9 C 1.34771 * 120.00465 * 180.02562 * 8 7 5 10 10 O 1.21285 * 119.99921 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00050 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46942 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46942 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99743 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00275 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99815 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47434 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47401 * 120.00256 * 17 15 13 20 20 H 1.48505 * 109.46993 * 240.00018 * 17 15 13 21 21 C 1.52992 * 109.47292 * 302.88237 * 5 2 1 22 22 C 1.50697 * 109.47162 * 184.69176 * 21 5 2 23 23 C 1.38245 * 120.00087 * 91.27641 * 22 21 5 24 24 C 1.38228 * 120.00045 * 179.72321 * 23 22 21 25 25 C 1.38231 * 120.00299 * 0.25862 * 24 23 22 26 26 C 1.38243 * 120.00129 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00506 * 271.50979 * 22 21 5 28 28 H 1.08998 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46903 * 300.00041 * 1 2 3 30 30 H 1.08997 * 109.46906 * 59.99810 * 1 2 3 31 31 H 0.96696 * 114.00072 * 54.15098 * 4 2 1 32 32 H 1.08999 * 109.47353 * 180.02562 * 6 5 2 33 33 H 1.08998 * 109.47077 * 300.00839 * 6 5 2 34 34 H 1.08996 * 109.46623 * 60.00317 * 6 5 2 35 35 H 1.09002 * 109.47481 * 180.02562 * 7 5 2 36 36 H 1.09003 * 109.47001 * 299.99969 * 7 5 2 37 37 H 0.97005 * 119.99330 * 359.97438 * 8 7 5 38 38 H 1.08999 * 109.47263 * 299.99491 * 11 9 8 39 39 H 1.09003 * 109.47060 * 59.99797 * 11 9 8 40 40 H 1.09007 * 109.47274 * 299.99815 * 12 11 9 41 41 H 1.09003 * 109.47182 * 60.00150 * 12 11 9 42 42 H 0.97000 * 120.00488 * 180.02562 * 16 15 13 43 43 H 1.09005 * 109.47461 * 64.69220 * 21 5 2 44 44 H 1.09007 * 109.47226 * 304.69199 * 21 5 2 45 45 H 1.07999 * 119.99384 * 359.97438 * 23 22 21 46 46 H 1.08004 * 119.99703 * 180.27599 * 24 23 22 47 47 H 1.08001 * 120.00669 * 180.02562 * 25 24 23 48 48 H 1.07994 * 120.00442 * 180.02562 * 26 25 24 49 49 H 1.08000 * 119.99648 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2492 6 6 3.5684 -0.7843 -1.2135 7 6 1.5901 0.0406 -2.4974 8 7 2.1342 1.4003 -2.4623 9 6 1.8668 2.2594 -3.4657 10 8 1.1759 1.9066 -4.3980 11 6 2.4261 3.6583 -3.4292 12 6 1.9762 4.4201 -4.6775 13 6 2.5350 5.8192 -4.6407 14 1 3.1492 6.1337 -3.8099 15 6 2.2613 6.6980 -5.6672 16 7 1.5129 6.3152 -6.6787 17 14 2.9545 8.4320 -5.6219 18 1 3.7586 8.6117 -4.3865 19 1 3.8169 8.6516 -6.8108 20 1 1.8385 9.4117 -5.6323 21 6 1.4718 -2.1413 -1.2859 22 6 2.0639 -2.8893 -2.4525 23 6 3.2183 -3.6310 -2.2840 24 6 3.7582 -4.3217 -3.3527 25 6 3.1468 -4.2665 -4.5912 26 6 1.9951 -3.5210 -4.7610 27 6 1.4555 -2.8299 -3.6923 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.6497 -1.5654 1.2793 32 1 3.9317 -1.2978 -2.1037 33 1 3.9732 0.2274 -1.1873 34 1 3.8889 -1.3270 -0.3243 35 1 1.9530 -0.4734 -3.3874 36 1 0.5013 0.0856 -2.5228 37 1 2.6865 1.6825 -1.7163 38 1 2.0626 4.1718 -2.5391 39 1 3.5149 3.6137 -3.4038 40 1 2.3400 3.9064 -5.5674 41 1 0.8874 4.4647 -4.7032 42 1 1.3206 6.9334 -7.4010 43 1 0.3882 -2.0963 -1.3954 44 1 1.7222 -2.6570 -0.3588 45 1 3.6959 -3.6740 -1.3163 46 1 4.6576 -4.9047 -3.2199 47 1 3.5684 -4.8065 -5.4262 48 1 1.5173 -3.4782 -5.7285 49 1 0.5555 -2.2478 -3.8249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293272984.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:14 Heat of formation + Delta-G solvation = -112.712123 kcal Electronic energy + Delta-G solvation = -27331.475164 eV Core-core repulsion = 23642.356401 eV Total energy + Delta-G solvation = -3689.118763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53021 -40.31268 -39.25009 -36.46348 -35.55710 -34.60797 -33.00860 -32.08770 -31.81923 -30.65396 -28.39727 -27.73653 -26.58326 -24.38457 -23.62003 -23.27066 -22.42852 -21.22388 -19.98315 -18.83552 -17.90119 -17.56623 -17.37817 -16.91354 -16.57228 -16.42281 -16.31380 -16.02890 -15.84262 -15.46691 -14.93853 -14.78788 -14.41329 -14.27045 -14.23808 -14.06442 -13.70902 -13.59934 -13.24059 -13.14059 -13.04041 -12.84667 -12.73886 -12.66606 -12.45474 -12.29114 -11.98045 -11.93307 -11.89804 -11.77554 -11.63599 -11.36787 -11.28753 -10.74178 -10.73135 -10.58209 -10.05423 -9.74571 -9.51725 -8.18435 -6.32415 0.47300 0.52854 1.41742 1.43136 1.56524 1.72752 2.26407 2.44888 2.89083 3.14543 3.37563 3.53958 3.74558 3.83095 4.05677 4.07798 4.08526 4.16788 4.22408 4.31717 4.34107 4.36919 4.49683 4.53868 4.58587 4.65730 4.72655 4.77516 4.85585 4.87758 4.94633 4.98178 5.08187 5.09184 5.15686 5.19559 5.27347 5.34371 5.41528 5.46527 5.53086 5.61078 5.62925 5.66602 5.74120 5.85209 6.16136 6.17531 6.58531 6.86213 6.89098 7.34633 7.38128 8.94426 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.002873 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.821501 B = 9743.865093 C =10895.052455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.120 3.880 3 H 0.091 0.909 4 O -0.563 6.563 5 C -0.080 4.080 6 C -0.138 4.138 7 C 0.126 3.874 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.588 6.588 11 C -0.121 4.121 12 C 0.043 3.957 13 C -0.542 4.542 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.937 5.937 17 Si 0.974 3.026 18 H -0.253 1.253 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.070 4.070 22 C -0.082 4.082 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.133 4.133 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.386 0.614 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.411 0.589 38 H 0.104 0.896 39 H 0.101 0.899 40 H -0.019 1.019 41 H -0.017 1.017 42 H 0.263 0.737 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.142 0.858 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.121 0.879 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -23.711 17.430 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.060 3.940 3 H 0.109 0.891 4 O -0.371 6.371 5 C -0.081 4.081 6 C -0.195 4.195 7 C 0.003 3.997 8 N -0.371 5.371 9 C 0.299 3.701 10 O -0.468 6.468 11 C -0.161 4.161 12 C 0.006 3.994 13 C -0.580 4.580 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.176 1.176 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.107 4.107 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.151 4.151 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.249 0.751 38 H 0.122 0.878 39 H 0.120 0.880 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.150 0.850 48 H 0.139 0.861 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.997 -23.372 16.714 28.889 hybrid contribution -0.243 0.578 -0.922 1.115 sum 2.754 -22.794 15.792 27.866 Atomic orbital electron populations 1.22611 0.95906 1.03763 1.02571 1.21751 0.93175 0.95815 0.83228 0.89086 1.86595 1.72551 1.33911 1.44052 1.21304 0.97554 0.95332 0.93913 1.21858 0.92962 1.02111 1.02594 1.21524 0.98197 0.81597 0.98395 1.45970 1.53985 1.12876 1.24249 1.21291 0.79337 0.88183 0.81287 1.90653 1.40472 1.79290 1.36384 1.21647 1.02339 0.90544 1.01554 1.18677 0.94636 0.94049 0.92085 1.21744 1.31727 0.97657 1.06846 0.90652 1.26143 0.95445 1.03955 0.94952 1.70185 1.39279 1.37507 1.10792 0.85271 0.78138 0.78132 0.78686 1.17610 1.20634 1.20585 1.20735 1.00542 0.92320 0.97112 1.19915 0.95861 0.97663 0.94765 1.21312 0.95349 0.96732 0.99929 1.21453 1.00517 0.99709 0.92907 1.21399 0.95901 0.99640 0.98440 1.21367 0.97183 0.97868 0.99192 1.21233 1.00720 0.99658 0.93516 0.90054 0.91570 0.92665 0.76388 0.93045 0.93049 0.90115 0.92897 0.92242 0.75081 0.87760 0.88039 1.00088 0.99895 0.92871 0.89787 0.87591 0.83982 0.84203 0.84995 0.86117 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 8.77 71.98 0.63 -2.02 16 2 C 0.12 1.70 2.78 30.59 0.08 1.79 16 3 H 0.09 1.49 6.79 -2.38 -0.02 1.48 16 4 O -0.56 -7.08 12.48 -148.98 -1.86 -8.94 16 5 C -0.08 -1.22 0.16 -52.18 -0.01 -1.23 16 6 C -0.14 -2.16 7.42 71.98 0.53 -1.63 16 7 C 0.13 3.03 3.76 86.38 0.32 3.36 16 8 N -0.72 -19.50 4.93 -463.06 -2.28 -21.79 16 9 C 0.51 20.05 7.83 87.66 0.69 20.74 16 10 O -0.59 -29.31 15.98 -3.05 -0.05 -29.36 16 11 C -0.12 -4.95 5.64 29.85 0.17 -4.78 16 12 C 0.04 2.44 4.26 29.85 0.13 2.57 16 13 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 14 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 15 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 16 N -0.94 -60.09 13.29 21.45 0.28 -59.80 16 17 Si 0.97 44.75 29.54 68.60 2.03 46.78 16 18 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.07 -0.84 3.73 29.84 0.11 -0.73 16 22 C -0.08 -1.36 3.99 -19.86 -0.08 -1.44 16 23 C -0.12 -1.70 7.95 22.27 0.18 -1.53 16 24 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 25 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 27 C -0.13 -2.79 7.88 22.27 0.18 -2.61 16 28 H 0.08 0.80 6.48 -2.39 -0.02 0.78 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.99 6.50 -2.39 -0.02 0.98 16 31 H 0.39 2.07 7.51 -74.06 -0.56 1.51 16 32 H 0.05 0.94 6.20 -2.39 -0.01 0.93 16 33 H 0.05 0.85 6.86 -2.39 -0.02 0.84 16 34 H 0.08 1.02 7.61 -2.39 -0.02 1.01 16 35 H 0.05 1.52 6.17 -2.39 -0.01 1.50 16 36 H 0.06 1.53 6.50 -2.39 -0.02 1.52 16 37 H 0.41 8.67 6.16 -92.70 -0.57 8.09 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 40 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 41 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.08 0.97 6.60 -2.38 -0.02 0.96 16 44 H 0.11 0.69 6.69 -2.38 -0.02 0.68 16 45 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 48 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.11 2.46 7.93 -2.91 -0.02 2.43 16 Total: -1.00 -79.77 383.33 2.25 -77.53 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.17 Total: 20.79 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 4.30 Total: -25.21 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.00 Total: -81.59 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.91 Total: -38.30 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -79.77 2.25 -77.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293272984.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.187 kcal (2) G-P(sol) polarization free energy of solvation -79.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds