Wall clock time and date at job start Tue Mar 31 2020 12:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99682 * 2 1 4 4 C 1.53001 * 112.85212 * 64.93490 * 3 2 1 5 5 C 1.53002 * 109.46675 * 53.92733 * 4 3 2 6 6 N 1.46907 * 109.46836 * 175.00299 * 5 4 3 7 7 C 1.46902 * 110.99949 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47008 * 35.00422 * 7 6 5 9 9 C 1.52996 * 109.47258 * 275.00052 * 7 6 5 10 10 C 1.50702 * 109.47098 * 155.00085 * 7 6 5 11 11 C 1.38302 * 119.92894 * 39.72573 * 10 7 6 12 12 C 1.38099 * 120.07007 * 179.72647 * 11 10 7 13 13 C 1.38888 * 119.92354 * 0.54788 * 12 11 10 14 14 O 1.35750 * 120.06421 * 179.74941 * 13 12 11 15 15 C 1.34832 * 116.99982 * 185.69299 * 14 13 12 16 16 H 1.07994 * 119.99735 * 5.41102 * 15 14 13 17 17 C 1.38651 * 119.99881 * 185.40870 * 15 14 13 18 18 N 1.31560 * 120.00289 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46877 * 90.00274 * 19 17 15 21 21 H 1.48504 * 109.46812 * 210.00300 * 19 17 15 22 22 H 1.48500 * 109.46972 * 330.00176 * 19 17 15 23 23 C 1.38869 * 119.86459 * 359.72866 * 13 12 11 24 24 C 1.38102 * 119.93257 * 359.97438 * 23 13 12 25 25 C 1.53783 * 113.68726 * 196.20520 * 3 2 1 26 26 C 1.53773 * 87.08074 * 89.12702 * 25 3 2 27 27 C 1.53780 * 113.61405 * 293.73898 * 3 2 1 28 28 H 1.08994 * 109.47099 * 55.00947 * 1 2 3 29 29 H 1.08996 * 109.47019 * 175.00678 * 1 2 3 30 30 H 1.08994 * 109.47299 * 295.00955 * 1 2 3 31 31 H 1.08993 * 109.47054 * 293.93289 * 4 3 2 32 32 H 1.08994 * 109.46989 * 173.92589 * 4 3 2 33 33 H 1.09004 * 109.47478 * 55.00504 * 5 4 3 34 34 H 1.08995 * 109.47716 * 295.00060 * 5 4 3 35 35 H 1.00892 * 111.00212 * 303.95289 * 6 5 4 36 36 H 1.09006 * 109.47286 * 60.00302 * 9 7 6 37 37 H 1.09005 * 109.47111 * 179.97438 * 9 7 6 38 38 H 1.08992 * 109.47255 * 300.00229 * 9 7 6 39 39 H 1.08002 * 119.96535 * 0.02562 * 11 10 7 40 40 H 1.07996 * 120.04146 * 180.27777 * 12 11 10 41 41 H 0.97002 * 119.99969 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.03059 * 179.97438 * 23 13 12 43 43 H 1.08002 * 119.96413 * 180.02562 * 24 23 13 44 44 H 1.09003 * 113.61257 * 203.67487 * 25 3 2 45 45 H 1.08991 * 113.61671 * 334.57574 * 25 3 2 46 46 H 1.09000 * 113.61868 * 270.87762 * 26 25 3 47 47 H 1.09002 * 113.61415 * 139.98135 * 26 25 3 48 48 H 1.09002 * 113.61459 * 25.34846 * 27 3 2 49 49 H 1.09001 * 113.61383 * 156.17238 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7062 2.0913 1.2771 5 6 2.1237 1.2654 2.4955 6 7 1.9434 2.0653 3.7144 7 6 2.3347 1.3026 4.9074 8 1 3.1795 0.6576 4.6653 9 6 1.1563 0.4458 5.3742 10 6 2.7291 2.2557 6.0061 11 6 2.0096 3.4208 6.2000 12 6 2.3649 4.2936 7.2095 13 6 3.4531 4.0057 8.0231 14 8 3.8080 4.8641 9.0131 15 6 4.9411 4.5849 9.6883 16 1 5.5667 3.7618 9.3763 17 6 5.3032 5.3547 10.7832 18 7 4.5409 6.3572 11.1636 19 14 6.8728 4.9674 11.7192 20 1 8.0029 5.7259 11.1256 21 1 6.7088 5.3565 13.1429 22 1 7.1540 3.5118 11.6331 23 6 4.1770 2.8378 7.8222 24 6 3.8128 1.9661 6.8148 25 6 3.4969 1.3200 -0.3930 26 6 3.0292 1.4703 -1.8502 27 6 1.7425 2.0990 -1.2898 28 1 -0.3633 0.5893 -0.8419 29 1 -0.3633 -1.0237 -0.0894 30 1 -0.3633 0.4344 0.9312 31 1 0.6378 2.3008 1.3291 32 1 2.2605 3.0297 1.2670 33 1 3.1715 0.9804 2.3996 34 1 1.5073 0.3684 2.5552 35 1 2.4544 2.9333 3.6562 36 1 0.8710 -0.2437 4.5795 37 1 1.4468 -0.1205 6.2591 38 1 0.3116 1.0906 5.6162 39 1 1.1660 3.6460 5.5643 40 1 1.8000 5.2011 7.3634 41 1 4.7944 6.8959 11.9294 42 1 5.0239 2.6115 8.4530 43 1 4.3752 1.0574 6.6583 44 1 4.0395 2.1873 -0.0169 45 1 4.0103 0.3794 -0.1940 46 1 2.8657 0.5191 -2.3567 47 1 3.6353 2.1630 -2.4340 48 1 0.8396 1.7871 -1.8149 49 1 1.8041 3.1793 -1.1586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293924244.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:36 Heat of formation + Delta-G solvation = -50.145805 kcal Electronic energy + Delta-G solvation = -26335.631357 eV Core-core repulsion = 22649.225673 eV Total energy + Delta-G solvation = -3686.405684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.04915 -40.82537 -39.04602 -36.96372 -36.48238 -34.34394 -33.28880 -31.81216 -30.01281 -29.25106 -27.95294 -27.36238 -26.48658 -25.14923 -23.81487 -23.36121 -22.18978 -21.34420 -20.33727 -19.76210 -18.83625 -17.32669 -17.11304 -16.87725 -16.47303 -16.32268 -16.05343 -15.88750 -15.56251 -15.47464 -15.22095 -15.08022 -14.46923 -14.43531 -14.12565 -14.09686 -13.88330 -13.55936 -13.45322 -13.16071 -13.01939 -12.81417 -12.74575 -12.48953 -12.44045 -12.23946 -12.13768 -12.04851 -12.01465 -11.74624 -11.65338 -11.54091 -11.20817 -10.95871 -10.78558 -10.26318 -9.77495 -9.34151 -8.91323 -8.47472 -6.15468 0.60096 0.68276 1.34619 1.43891 1.52067 2.17401 2.73640 2.81267 3.12827 3.22544 3.51612 3.58915 3.68242 3.88037 3.91747 4.00817 4.11163 4.23269 4.27058 4.34076 4.42485 4.46675 4.52580 4.60083 4.61016 4.68538 4.75022 4.75940 4.80921 4.84305 4.88272 4.94164 4.98227 5.00376 5.05690 5.10574 5.12652 5.14775 5.23268 5.30207 5.35339 5.39499 5.43820 5.57693 5.71588 5.73444 6.02557 6.18441 6.24304 6.36076 6.50026 6.97313 7.78543 8.75785 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.002111 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.938715 B =13260.628211 C =13586.911987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.381 6.381 3 C 0.088 3.912 4 C -0.123 4.123 5 C 0.072 3.928 6 N -0.685 5.685 7 C 0.147 3.853 8 H 0.049 0.951 9 C -0.129 4.129 10 C -0.164 4.164 11 C -0.044 4.044 12 C -0.204 4.204 13 C 0.114 3.886 14 O -0.232 6.232 15 C -0.412 4.412 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.242 4.242 24 C -0.064 4.064 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.161 4.161 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.343 0.657 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -12.645 -24.567 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.048 3.952 4 C -0.161 4.161 5 C -0.057 4.057 6 N -0.317 5.317 7 C 0.037 3.963 8 H 0.067 0.933 9 C -0.187 4.187 10 C -0.165 4.165 11 C -0.062 4.062 12 C -0.224 4.224 13 C 0.064 3.936 14 O -0.139 6.139 15 C -0.488 4.488 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.261 4.261 24 C -0.083 4.083 25 C -0.166 4.166 26 C -0.171 4.171 27 C -0.198 4.198 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.164 0.836 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.119 0.881 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.889 -12.623 -24.274 27.987 hybrid contribution 1.330 0.398 0.870 1.639 sum -4.559 -12.225 -23.404 26.795 Atomic orbital electron populations 1.22854 0.80189 1.03369 1.00739 1.87871 1.20814 1.26416 1.94899 1.22622 0.95390 0.83694 0.93512 1.21916 1.02603 0.98700 0.92887 1.21793 0.98716 0.96571 0.88621 1.60624 1.62311 1.07372 1.01404 1.20132 0.96438 0.92284 0.87421 0.93313 1.21732 0.97572 0.98831 1.00546 1.19729 0.98218 0.97591 1.00950 1.20753 0.98441 0.92285 0.94768 1.20484 0.99375 1.03050 0.99454 1.19963 0.94431 0.89964 0.89277 1.83954 1.41391 1.46055 1.42484 1.21784 0.98014 1.17646 1.11396 0.88252 1.26591 1.03340 0.95156 0.97034 1.70185 1.39822 1.18919 1.26927 0.84590 0.75179 0.79495 0.76966 1.18779 1.19590 1.17709 1.21207 1.04347 0.96697 1.03839 1.20925 0.95960 0.98052 0.93358 1.23060 0.93936 1.02881 0.96764 1.22744 0.97086 1.01231 0.96007 1.23531 0.99000 1.00782 0.96508 0.93053 0.88787 0.93726 0.91046 0.90213 0.95706 0.91383 0.83866 0.91943 0.92697 0.92658 0.83593 0.86958 0.91840 0.86484 0.84606 0.88103 0.91517 0.90386 0.90250 0.90813 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 113.37 1.20 1.52 16 2 O -0.38 -6.76 9.97 -148.98 -1.49 -8.24 16 3 C 0.09 1.33 0.72 -10.27 -0.01 1.32 16 4 C -0.12 -1.92 4.53 30.60 0.14 -1.78 16 5 C 0.07 1.35 5.21 86.30 0.45 1.80 16 6 N -0.69 -14.67 5.68 -495.42 -2.82 -17.49 16 7 C 0.15 3.54 2.82 44.17 0.12 3.66 16 8 H 0.05 1.15 7.66 -2.38 -0.02 1.13 16 9 C -0.13 -2.92 9.39 71.98 0.68 -2.24 16 10 C -0.16 -5.08 4.72 -19.84 -0.09 -5.18 16 11 C -0.04 -1.49 8.99 22.25 0.20 -1.29 16 12 C -0.20 -8.74 9.99 22.39 0.22 -8.52 16 13 C 0.11 5.71 6.65 22.58 0.15 5.86 16 14 O -0.23 -14.09 9.76 -22.77 -0.22 -14.31 16 15 C -0.41 -24.17 9.44 67.92 0.64 -23.53 16 16 H 0.10 5.36 5.29 -2.91 -0.02 5.34 16 17 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 18 N -0.92 -56.81 13.67 21.61 0.30 -56.51 16 19 Si 1.02 43.04 29.55 68.60 2.03 45.07 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.24 -10.58 9.13 22.39 0.20 -10.38 16 24 C -0.06 -2.23 9.66 22.25 0.21 -2.01 16 25 C -0.13 -1.84 7.24 31.12 0.23 -1.61 16 26 C -0.13 -1.65 8.02 31.12 0.25 -1.40 16 27 C -0.16 -1.96 7.19 31.12 0.22 -1.74 16 28 H 0.05 0.56 6.61 -2.39 -0.02 0.55 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.60 7.22 -2.39 -0.02 0.58 16 31 H 0.07 1.14 7.38 -2.39 -0.02 1.12 16 32 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 33 H 0.02 0.49 7.86 -2.38 -0.02 0.47 16 34 H 0.07 1.36 7.17 -2.39 -0.02 1.35 16 35 H 0.34 7.55 7.98 -89.70 -0.72 6.84 16 36 H 0.06 1.24 7.45 -2.38 -0.02 1.22 16 37 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.15 4.16 7.70 -2.91 -0.02 4.14 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.12 5.24 5.71 -2.91 -0.02 5.23 16 43 H 0.14 3.85 8.03 -2.91 -0.02 3.82 16 44 H 0.10 1.27 8.04 -2.39 -0.02 1.25 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.07 0.87 6.74 -2.39 -0.02 0.85 16 49 H 0.10 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -68.81 391.91 3.30 -65.51 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.22 Total: 32.39 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 5.28 Total: -46.41 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.52 Total: -74.00 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.71 Total: -22.55 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -68.81 3.30 -65.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293924244.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.361 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds