Wall clock time and date at job start Tue Mar 31 2020 12:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07024 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99765 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14765 * 359.97368 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.74930 * 6 5 4 8 8 N 1.46904 * 109.47096 * 90.00103 * 7 6 5 9 9 C 1.46899 * 110.99859 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.08998 * 115.55029 * 330.67144 * 10 9 8 12 12 C 1.52997 * 117.49403 * 116.37677 * 10 9 8 13 13 C 1.53001 * 117.49531 * 184.99789 * 10 9 8 14 14 H 1.08990 * 117.50088 * 0.02728 * 13 10 9 15 15 C 1.53003 * 117.49204 * 145.02629 * 13 10 9 16 16 C 1.38247 * 120.14468 * 0.02562 * 6 5 4 17 17 C 1.38558 * 119.99917 * 359.97438 * 16 6 5 18 18 O 1.35995 * 120.07405 * 180.02562 * 17 16 6 19 19 C 1.42894 * 117.00081 * 359.96402 * 18 17 16 20 20 C 1.52998 * 109.47488 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47262 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99950 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99832 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00349 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99966 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46865 * 60.00072 * 25 23 21 27 27 H 1.48496 * 109.47072 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46982 * 299.99980 * 25 23 21 29 29 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 31 31 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 32 32 H 1.07998 * 120.00286 * 0.04338 * 4 3 2 33 33 H 1.08004 * 119.92819 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47409 * 210.00235 * 7 6 5 35 35 H 1.08995 * 109.47019 * 330.00110 * 7 6 5 36 36 H 1.00900 * 110.99799 * 56.04557 * 8 7 6 37 37 H 1.09000 * 109.47358 * 299.99758 * 9 8 7 38 38 H 1.09003 * 109.47320 * 60.00383 * 9 8 7 39 39 H 1.09002 * 117.49914 * 214.97668 * 12 10 9 40 40 H 1.09000 * 117.50243 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47580 * 60.00218 * 15 13 10 42 42 H 1.09008 * 109.46776 * 180.02562 * 15 13 10 43 43 H 1.08996 * 109.47248 * 299.99266 * 15 13 10 44 44 H 1.07995 * 120.00081 * 179.97438 * 16 6 5 45 45 H 1.09003 * 109.46964 * 299.99453 * 19 18 17 46 46 H 1.09001 * 109.47221 * 59.99407 * 19 18 17 47 47 H 1.09003 * 109.46921 * 299.99907 * 20 19 18 48 48 H 1.09001 * 109.47024 * 59.99715 * 20 19 18 49 49 H 0.97002 * 120.00594 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3027 3.6800 -0.0005 7 6 3.9834 5.0244 -0.0068 8 7 4.2037 5.4683 1.3761 9 6 4.8664 6.7788 1.4092 10 6 5.0778 7.2069 2.8628 11 1 4.3445 6.8294 3.5754 12 6 6.5194 7.3667 3.3495 13 6 5.6508 8.6036 3.1117 14 1 5.8767 9.2176 2.2399 15 6 5.1510 9.3631 4.3423 16 6 4.0602 2.5234 0.0000 17 6 3.4359 1.2865 0.0006 18 8 4.1795 0.1478 0.0016 19 6 5.6002 0.3008 0.0014 20 6 6.2618 -1.0787 0.0033 21 6 7.7602 -0.9173 0.0024 22 1 8.1969 0.0704 0.0010 23 6 8.5734 -2.0306 0.0033 24 7 8.0417 -3.2335 0.0055 25 14 10.4307 -1.8306 0.0014 26 1 10.8489 -1.0798 1.2125 27 1 11.0728 -3.1696 0.0034 28 1 10.8468 -1.0834 -1.2125 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2145 2.3196 -0.0002 33 1 1.3339 4.5115 -0.0019 34 1 4.9418 4.9441 -0.5196 35 1 3.3538 5.7480 -0.5247 36 1 4.7308 4.7829 1.8962 37 1 5.8310 6.7111 0.9061 38 1 4.2425 7.5144 0.9013 39 1 6.7349 7.0942 4.3827 40 1 7.3173 7.1673 2.6341 41 1 5.3837 8.7920 5.2411 42 1 5.6406 10.3358 4.3925 43 1 4.0725 9.5030 4.2697 44 1 5.1384 2.5841 0.0000 45 1 5.9064 0.8496 -0.8893 46 1 5.9065 0.8516 0.8907 47 1 5.9556 -1.6272 0.8941 48 1 5.9555 -1.6298 -0.8859 49 1 8.6138 -4.0168 0.0065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299446655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:38 Heat of formation + Delta-G solvation = -41.176563 kcal Electronic energy + Delta-G solvation = -25871.063426 eV Core-core repulsion = 22185.046678 eV Total energy + Delta-G solvation = -3686.016748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31393 -38.60259 -38.11983 -37.23275 -35.12721 -33.34448 -31.06663 -30.55110 -29.43383 -28.90850 -27.52397 -26.08142 -25.04677 -23.77841 -22.39069 -21.32603 -21.22850 -20.55905 -20.36107 -18.24245 -17.05348 -16.53509 -16.24027 -15.81608 -15.75146 -15.17889 -14.99594 -14.93385 -14.58972 -14.42939 -14.40463 -13.93772 -13.88041 -13.37240 -13.19022 -12.76931 -12.63967 -12.35594 -12.29613 -12.26586 -11.84284 -11.66150 -11.56984 -11.47173 -11.34289 -11.03805 -10.91672 -10.80971 -10.78353 -10.53859 -10.22257 -10.01962 -9.80727 -9.63509 -9.28472 -8.68615 -8.45543 -8.42009 -7.46687 -6.07703 -4.12520 1.41629 1.62939 3.29460 3.33816 3.35466 3.43041 3.44798 3.74995 3.83591 4.12956 4.42145 4.50726 4.58384 4.75404 4.79235 4.88731 4.98869 5.04992 5.14277 5.19136 5.19878 5.26606 5.28320 5.32805 5.42930 5.47881 5.50116 5.52572 5.54372 5.57459 5.60785 5.64383 5.73137 5.86399 5.94580 6.06177 6.06424 6.06879 6.31738 6.37379 6.64640 6.74156 6.81781 6.88964 7.21190 7.35502 7.58447 7.68864 7.86220 8.13490 8.26842 8.92899 9.51397 11.03804 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006987 B = 0.003241 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4006.756858 B = 8638.117871 C =12214.754531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.090 3.910 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.083 4.083 7 C 0.104 3.896 8 N -0.683 5.683 9 C 0.089 3.911 10 C -0.146 4.146 11 H 0.113 0.887 12 C -0.179 4.179 13 C -0.153 4.153 14 H 0.102 0.898 15 C -0.122 4.122 16 C -0.172 4.172 17 C 0.119 3.881 18 O -0.304 6.304 19 C 0.065 3.935 20 C 0.026 3.974 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.061 3.939 24 N -0.889 5.889 25 Si 0.898 3.102 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.346 0.654 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.134 0.866 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 21.380 3.142 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.024 4.024 8 N -0.315 5.315 9 C -0.040 4.040 10 C -0.165 4.165 11 H 0.131 0.869 12 C -0.216 4.216 13 C -0.171 4.171 14 H 0.120 0.880 15 C -0.179 4.179 16 C -0.191 4.191 17 C 0.072 3.928 18 O -0.218 6.218 19 C -0.009 4.009 20 C -0.011 4.011 21 C -0.565 4.565 22 H 0.075 0.925 23 C -0.142 4.142 24 N -0.527 5.527 25 Si 0.726 3.274 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.165 0.835 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.151 0.849 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.951 21.043 3.202 24.916 hybrid contribution 1.869 0.056 -0.265 1.888 sum -11.082 21.099 2.936 24.012 Atomic orbital electron populations 1.23013 0.79248 1.03707 1.00763 1.86243 1.20406 1.25985 1.88993 1.18351 0.89437 0.85087 1.02663 1.20956 0.99509 0.91568 1.07433 1.20540 0.93588 0.96632 1.01904 1.19329 0.93469 0.93560 1.02061 1.20783 0.98651 0.93310 0.89642 1.60505 1.53367 1.04399 1.13188 1.21520 0.96755 0.91572 0.94169 1.22427 0.96915 0.99410 0.97730 0.86926 1.23257 0.93927 1.01953 1.02484 1.22356 1.04195 0.90186 1.00385 0.88035 1.21355 1.00998 0.99689 0.95878 1.21026 1.00464 0.90746 1.06905 1.18396 0.88502 0.87004 0.98876 1.86283 1.20878 1.27282 1.87313 1.23313 0.75027 1.03204 0.99349 1.19103 0.94092 0.88951 0.98931 1.20928 0.90368 0.92831 1.52340 0.92502 1.24985 0.99076 0.95136 0.94958 1.69968 1.35526 0.97600 1.49600 0.86561 0.84896 0.77311 0.78677 1.20110 1.21111 1.20124 0.88441 0.93026 0.93052 0.85241 0.86016 0.94335 0.90282 0.83531 0.95079 0.90766 0.88750 0.88919 0.92524 0.92283 0.92165 0.84853 0.93344 0.93322 0.95365 0.95381 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.05 10.28 -34.24 -0.35 -5.40 16 3 C 0.09 1.50 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.31 9.04 -39.46 -0.36 -2.67 16 5 C -0.11 -1.34 9.69 -39.57 -0.38 -1.72 16 6 C -0.08 -1.10 5.39 -104.61 -0.56 -1.67 16 7 C 0.10 1.13 5.81 -4.98 -0.03 1.11 16 8 N -0.68 -7.22 6.49 -115.05 -0.75 -7.96 16 9 C 0.09 0.80 5.97 -3.82 -0.02 0.78 16 10 C -0.15 -1.26 5.67 -90.62 -0.51 -1.77 16 11 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 12 C -0.18 -1.48 9.82 -26.73 -0.26 -1.74 16 13 C -0.15 -1.16 6.13 -90.62 -0.56 -1.71 16 14 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 15 C -0.12 -0.81 10.19 37.16 0.38 -0.43 16 16 C -0.17 -2.71 8.69 -39.46 -0.34 -3.05 16 17 C 0.12 2.20 6.70 -39.12 -0.26 1.94 16 18 O -0.30 -6.67 9.92 -34.23 -0.34 -7.01 16 19 C 0.07 1.44 4.68 37.16 0.17 1.61 16 20 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 21 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 22 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 23 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 25 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.10 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 32 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.35 3.88 8.72 -39.29 -0.34 3.53 16 37 H 0.03 0.28 7.88 -51.93 -0.41 -0.13 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.75 8.05 -51.93 -0.42 0.34 16 40 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 41 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.13 2.06 6.30 -52.49 -0.33 1.73 16 45 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 46 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 404.27 15.07 6.09 6.09 Total: -1.00 -31.65 404.27 -10.64 -42.29 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.44 Total: 1.40 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.57 Total: -19.76 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.01 Total: -34.00 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.69 Total: -12.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.65 -10.64 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299446655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.108 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds