Wall clock time and date at job start Tue Mar 31 2020 12:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 116.99765 * 2 1 4 4 C 1.38563 * 120.07024 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99765 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14765 * 359.97368 * 5 4 3 7 7 C 1.50698 * 119.92913 * 179.74930 * 6 5 4 8 8 N 1.46904 * 109.47096 * 90.00103 * 7 6 5 9 9 C 1.46899 * 110.99859 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 8 7 11 11 H 1.08998 * 115.55029 * 330.67144 * 10 9 8 12 12 C 1.52997 * 117.49403 * 116.37677 * 10 9 8 13 13 C 1.53001 * 117.49531 * 184.99789 * 10 9 8 14 14 H 1.08990 * 117.50088 * 0.02728 * 13 10 9 15 15 C 1.53003 * 117.49204 * 145.02629 * 13 10 9 16 16 C 1.38247 * 120.14468 * 0.02562 * 6 5 4 17 17 C 1.38558 * 119.99917 * 359.97438 * 16 6 5 18 18 O 1.35995 * 120.07405 * 180.02562 * 17 16 6 19 19 C 1.42894 * 117.00081 * 359.96402 * 18 17 16 20 20 C 1.52998 * 109.47488 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47262 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99950 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99832 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00349 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99966 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46865 * 60.00072 * 25 23 21 27 27 H 1.48496 * 109.47072 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46982 * 299.99980 * 25 23 21 29 29 H 1.09008 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47596 * 299.99815 * 1 2 3 31 31 H 1.09004 * 109.47087 * 60.00573 * 1 2 3 32 32 H 1.07998 * 120.00286 * 0.04338 * 4 3 2 33 33 H 1.08004 * 119.92819 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47409 * 210.00235 * 7 6 5 35 35 H 1.08995 * 109.47019 * 330.00110 * 7 6 5 36 36 H 1.00900 * 110.99799 * 56.04557 * 8 7 6 37 37 H 1.09000 * 109.47358 * 299.99758 * 9 8 7 38 38 H 1.09003 * 109.47320 * 60.00383 * 9 8 7 39 39 H 1.09002 * 117.49914 * 214.97668 * 12 10 9 40 40 H 1.09000 * 117.50243 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.47580 * 60.00218 * 15 13 10 42 42 H 1.09008 * 109.46776 * 180.02562 * 15 13 10 43 43 H 1.08996 * 109.47248 * 299.99266 * 15 13 10 44 44 H 1.07995 * 120.00081 * 179.97438 * 16 6 5 45 45 H 1.09003 * 109.46964 * 299.99453 * 19 18 17 46 46 H 1.09001 * 109.47221 * 59.99407 * 19 18 17 47 47 H 1.09003 * 109.46921 * 299.99907 * 20 19 18 48 48 H 1.09001 * 109.47024 * 59.99715 * 20 19 18 49 49 H 0.97002 * 120.00594 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6057 -0.0011 6 6 3.3027 3.6800 -0.0005 7 6 3.9834 5.0244 -0.0068 8 7 4.2037 5.4683 1.3761 9 6 4.8664 6.7788 1.4092 10 6 5.0778 7.2069 2.8628 11 1 4.3445 6.8294 3.5754 12 6 6.5194 7.3667 3.3495 13 6 5.6508 8.6036 3.1117 14 1 5.8767 9.2176 2.2399 15 6 5.1510 9.3631 4.3423 16 6 4.0602 2.5234 0.0000 17 6 3.4359 1.2865 0.0006 18 8 4.1795 0.1478 0.0016 19 6 5.6002 0.3008 0.0014 20 6 6.2618 -1.0787 0.0033 21 6 7.7602 -0.9173 0.0024 22 1 8.1969 0.0704 0.0010 23 6 8.5734 -2.0306 0.0033 24 7 8.0417 -3.2335 0.0055 25 14 10.4307 -1.8306 0.0014 26 1 10.8489 -1.0798 1.2125 27 1 11.0728 -3.1696 0.0034 28 1 10.8468 -1.0834 -1.2125 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2145 2.3196 -0.0002 33 1 1.3339 4.5115 -0.0019 34 1 4.9418 4.9441 -0.5196 35 1 3.3538 5.7480 -0.5247 36 1 4.7308 4.7829 1.8962 37 1 5.8310 6.7111 0.9061 38 1 4.2425 7.5144 0.9013 39 1 6.7349 7.0942 4.3827 40 1 7.3173 7.1673 2.6341 41 1 5.3837 8.7920 5.2411 42 1 5.6406 10.3358 4.3925 43 1 4.0725 9.5030 4.2697 44 1 5.1384 2.5841 0.0000 45 1 5.9064 0.8496 -0.8893 46 1 5.9065 0.8516 0.8907 47 1 5.9556 -1.6272 0.8941 48 1 5.9555 -1.6298 -0.8859 49 1 8.6138 -4.0168 0.0065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299446655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:37 Heat of formation + Delta-G solvation = -59.403168 kcal Electronic energy + Delta-G solvation = -25871.853791 eV Core-core repulsion = 22185.046678 eV Total energy + Delta-G solvation = -3686.807113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52216 -39.47360 -39.29401 -38.33629 -36.04153 -35.43974 -32.57261 -31.82522 -30.81385 -29.64830 -28.40145 -27.15262 -26.75660 -24.67078 -23.92637 -22.56808 -21.96302 -21.88328 -21.12696 -19.51218 -18.63453 -17.83871 -17.58869 -17.15321 -16.91611 -16.54330 -16.33804 -15.91926 -15.77265 -15.57327 -15.27796 -15.07743 -14.69190 -14.32598 -14.18992 -14.09762 -13.93897 -13.85522 -13.28481 -13.09111 -12.97782 -12.92285 -12.75335 -12.62778 -12.56159 -12.25569 -12.22725 -12.08327 -11.95967 -11.86828 -11.59958 -11.58932 -11.42598 -10.85263 -10.64597 -10.62368 -9.70345 -9.38692 -8.71303 -8.26911 -6.41397 0.29790 0.46588 1.39558 1.44117 1.52103 2.26709 2.43074 2.51035 2.64557 2.84361 3.06980 3.30933 3.79214 3.82673 3.88031 3.96175 4.07665 4.10782 4.16477 4.24917 4.28389 4.38656 4.42341 4.43262 4.45454 4.50108 4.57130 4.61083 4.66596 4.73007 4.74708 4.85728 4.88145 4.92315 4.96253 4.97642 5.19832 5.21003 5.29192 5.31238 5.31764 5.45261 5.47087 5.61129 5.67325 5.80108 6.04416 6.05533 6.24837 6.35284 6.71301 6.74285 7.28705 8.86230 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006987 B = 0.003241 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4006.756858 B = 8638.117871 C =12214.754531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.166 4.166 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.109 3.891 8 N -0.687 5.687 9 C 0.092 3.908 10 C -0.152 4.152 11 H 0.104 0.896 12 C -0.186 4.186 13 C -0.144 4.144 14 H 0.109 0.891 15 C -0.123 4.123 16 C -0.173 4.173 17 C 0.070 3.930 18 O -0.336 6.336 19 C 0.086 3.914 20 C 0.030 3.970 21 C -0.546 4.546 22 H 0.071 0.929 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.977 3.023 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.263 1.263 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.340 0.660 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.058 0.942 47 H -0.005 1.005 48 H -0.005 1.005 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 24.596 3.105 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.028 3.972 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.020 4.020 8 N -0.318 5.318 9 C -0.036 4.036 10 C -0.170 4.170 11 H 0.122 0.878 12 C -0.223 4.223 13 C -0.163 4.163 14 H 0.127 0.873 15 C -0.180 4.180 16 C -0.193 4.193 17 C 0.025 3.975 18 O -0.251 6.251 19 C 0.012 3.988 20 C -0.007 4.007 21 C -0.584 4.584 22 H 0.089 0.911 23 C -0.198 4.198 24 N -0.571 5.571 25 Si 0.800 3.200 26 H -0.187 1.187 27 H -0.207 1.207 28 H -0.188 1.188 29 H 0.128 0.872 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.158 0.842 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.147 0.853 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.444 24.293 3.164 27.944 hybrid contribution 1.827 -0.885 -0.241 2.045 sum -11.617 23.407 2.923 26.294 Atomic orbital electron populations 1.23345 0.76472 1.05264 1.02498 1.86187 1.23485 1.26751 1.89226 1.18660 0.89064 0.86279 1.03149 1.21334 1.01002 0.90450 1.05636 1.21001 0.93443 0.97624 0.99266 1.19611 0.94041 0.93702 1.00918 1.20795 0.98805 0.92338 0.90032 1.60541 1.53598 1.04825 1.12810 1.21525 0.96752 0.90889 0.94454 1.22363 0.96836 1.00465 0.97350 0.87790 1.23288 0.93787 1.02783 1.02450 1.22447 1.03068 0.89815 1.00961 0.87320 1.21378 1.01280 1.00006 0.95306 1.21089 1.00522 0.90839 1.06827 1.18850 0.89373 0.86710 1.02606 1.86180 1.20283 1.29837 1.88817 1.22825 0.75926 0.99929 1.00163 1.18936 0.94809 0.91194 0.95762 1.21351 0.90993 0.93713 1.52340 0.91069 1.26074 1.05031 0.94564 0.94089 1.70126 1.37783 0.98668 1.50489 0.85321 0.77589 0.77579 0.79475 1.18743 1.20721 1.18751 0.87246 0.91232 0.91124 0.81877 0.82596 0.94480 0.88243 0.84242 0.95165 0.89853 0.88802 0.89073 0.92749 0.91299 0.91853 0.85303 0.92415 0.92388 0.98621 0.98616 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.60 10.28 -79.68 -0.82 -12.42 16 3 C 0.07 2.45 6.70 22.57 0.15 2.60 16 4 C -0.17 -3.94 9.04 22.35 0.20 -3.74 16 5 C -0.09 -2.05 9.69 22.27 0.22 -1.83 16 6 C -0.08 -2.01 5.39 -19.86 -0.11 -2.12 16 7 C 0.11 2.09 5.81 85.56 0.50 2.59 16 8 N -0.69 -13.16 6.49 -517.92 -3.36 -16.52 16 9 C 0.09 1.48 5.97 86.31 0.51 2.00 16 10 C -0.15 -2.39 5.67 -10.79 -0.06 -2.45 16 11 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.19 -2.86 9.82 30.59 0.30 -2.56 16 13 C -0.14 -1.93 6.13 -10.79 -0.07 -2.00 16 14 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.12 -1.40 10.19 71.98 0.73 -0.67 16 16 C -0.17 -5.48 8.69 22.35 0.19 -5.29 16 17 C 0.07 2.67 6.70 22.57 0.15 2.82 16 18 O -0.34 -15.69 9.92 -79.63 -0.79 -16.48 16 19 C 0.09 3.99 4.68 71.98 0.34 4.33 16 20 C 0.03 1.73 5.34 29.85 0.16 1.89 16 21 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 22 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 23 C 0.00 0.06 5.46 84.65 0.46 0.52 16 24 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 25 Si 0.98 44.10 29.54 68.60 2.03 46.13 16 26 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 29 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 31 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 32 H 0.16 2.69 6.30 -2.91 -0.02 2.67 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.04 0.73 8.08 -2.39 -0.02 0.72 16 35 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.34 7.26 8.72 -89.69 -0.78 6.48 16 37 H 0.03 0.50 7.88 -2.39 -0.02 0.48 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.43 8.05 -2.39 -0.02 1.41 16 40 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 41 H 0.05 0.64 7.90 -2.39 -0.02 0.62 16 42 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 4.05 6.30 -2.91 -0.02 4.04 16 45 H 0.06 2.51 7.67 -2.39 -0.02 2.49 16 46 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 47 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -71.98 404.27 2.51 -69.46 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.14 Total: 21.36 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 5.03 Total: -33.83 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -3.08 Total: -74.23 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.61 Total: -28.90 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.98 2.51 -69.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299446655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.061 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds