Wall clock time and date at job start Tue Mar 31 2020 12:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99930 * 2 1 4 4 C 1.38570 * 120.07460 * 359.97438 * 3 2 1 5 5 C 1.38238 * 119.99772 * 180.27982 * 4 3 2 6 6 C 1.38254 * 120.15025 * 359.48447 * 5 4 3 7 7 C 1.50695 * 119.92992 * 180.25886 * 6 5 4 8 8 N 1.46909 * 109.47094 * 270.25428 * 7 6 5 9 9 C 1.46896 * 110.99983 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47028 * 180.02562 * 9 8 7 11 11 H 1.08992 * 115.55143 * 29.41765 * 10 9 8 12 12 C 1.53003 * 117.49743 * 243.74413 * 10 9 8 13 13 C 1.53000 * 117.49613 * 175.08769 * 10 9 8 14 14 H 1.08998 * 117.50553 * 359.97438 * 13 10 9 15 15 C 1.53002 * 117.49673 * 214.99943 * 13 10 9 16 16 C 1.38247 * 120.14245 * 0.51541 * 6 5 4 17 17 C 1.38561 * 119.99676 * 359.74288 * 16 6 5 18 18 O 1.35996 * 120.06955 * 179.97438 * 17 16 6 19 19 C 1.42910 * 116.99963 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.46886 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.46992 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00211 * 359.97438 * 21 20 19 23 23 C 1.37883 * 120.00053 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00053 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99907 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47156 * 59.99866 * 25 23 21 27 27 H 1.48502 * 109.47312 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47447 * 299.99935 * 25 23 21 29 29 H 1.09003 * 109.47154 * 60.00691 * 1 2 3 30 30 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47301 * 300.00327 * 1 2 3 32 32 H 1.08002 * 119.99648 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92674 * 179.74797 * 5 4 3 34 34 H 1.08999 * 109.47395 * 30.25098 * 7 6 5 35 35 H 1.09002 * 109.47505 * 150.25781 * 7 6 5 36 36 H 1.00904 * 110.99606 * 56.04928 * 8 7 6 37 37 H 1.09002 * 109.47005 * 300.00385 * 9 8 7 38 38 H 1.09001 * 109.47500 * 60.00127 * 9 8 7 39 39 H 1.09000 * 117.49804 * 0.02562 * 12 10 9 40 40 H 1.08997 * 117.49694 * 145.02028 * 12 10 9 41 41 H 1.09006 * 109.47216 * 60.00144 * 15 13 10 42 42 H 1.09006 * 109.47099 * 179.97438 * 15 13 10 43 43 H 1.08999 * 109.47686 * 300.00358 * 15 13 10 44 44 H 1.08001 * 119.99709 * 179.76743 * 16 6 5 45 45 H 1.09000 * 109.46792 * 299.99909 * 19 18 17 46 46 H 1.08998 * 109.46848 * 60.00277 * 19 18 17 47 47 H 1.09007 * 109.47344 * 300.00133 * 20 19 18 48 48 H 1.09003 * 109.47698 * 60.00190 * 20 19 18 49 49 H 0.97003 * 120.00140 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6056 -0.0064 6 6 3.3029 3.6798 -0.0009 7 6 3.9836 5.0243 -0.0015 8 7 4.2050 5.4605 -1.3867 9 6 4.8678 6.7709 -1.4264 10 6 5.0803 7.1910 -2.8821 11 1 4.3467 6.8109 -3.5930 12 6 6.5224 7.3454 -3.3695 13 6 5.6554 8.5855 -3.1382 14 1 5.8820 9.2038 -2.2696 15 6 5.1568 9.3396 -4.3725 16 6 4.0603 2.5233 -0.0004 17 6 3.4359 1.2863 0.0001 18 8 4.1795 0.1477 0.0001 19 6 5.6003 0.3007 0.0002 20 6 6.2618 -1.0790 -0.0005 21 6 7.7601 -0.9176 0.0003 22 1 8.1969 0.0701 0.0007 23 6 8.5734 -2.0311 -0.0007 24 7 8.0416 -3.2338 -0.0017 25 14 10.4306 -1.8311 -0.0005 26 1 10.8479 -1.0830 1.2126 27 1 11.0728 -3.1701 -0.0010 28 1 10.8479 -1.0811 -1.2124 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2146 2.3196 -0.0014 33 1 1.3342 4.5114 -0.0109 34 1 3.3537 5.7507 0.5119 35 1 4.9418 4.9467 0.5125 36 1 3.3383 5.4783 -1.9030 37 1 4.2436 7.5092 -0.9229 38 1 5.8320 6.7058 -0.9222 39 1 7.3197 7.1472 -2.6532 40 1 6.7374 7.0670 -4.4012 41 1 4.0784 9.4815 -4.3006 42 1 5.6479 10.3112 -4.4277 43 1 5.3884 8.7636 -5.2684 44 1 5.1386 2.5840 0.0001 45 1 5.9066 0.8505 -0.8898 46 1 5.9065 0.8504 0.8902 47 1 5.9555 -1.6292 0.8893 48 1 5.9556 -1.6284 -0.8907 49 1 8.6137 -4.0172 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299446660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:40 Heat of formation + Delta-G solvation = -59.072564 kcal Electronic energy + Delta-G solvation = -25862.341009 eV Core-core repulsion = 22175.548231 eV Total energy + Delta-G solvation = -3686.792777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51480 -39.46401 -39.28063 -38.33845 -36.05318 -35.43077 -32.56486 -31.82809 -30.81568 -29.65575 -28.39826 -27.14666 -26.73680 -24.65039 -23.95735 -22.46993 -22.11973 -21.87624 -21.13050 -19.48466 -18.62631 -17.77477 -17.61155 -17.14550 -16.72092 -16.53076 -16.33436 -16.21356 -15.77414 -15.59288 -15.12905 -15.01561 -14.78678 -14.31761 -14.24612 -14.15209 -13.90805 -13.64738 -13.33987 -13.10702 -13.03029 -12.85972 -12.76111 -12.62302 -12.54338 -12.30871 -12.19739 -12.07669 -11.93760 -11.86955 -11.59320 -11.58981 -11.41461 -10.86321 -10.66444 -10.61474 -9.64789 -9.32105 -8.71207 -8.26094 -6.40368 0.31819 0.45060 1.40202 1.45038 1.52932 2.27878 2.43353 2.52098 2.64128 2.85397 3.07697 3.36641 3.77851 3.84854 3.88714 3.96035 4.07654 4.13429 4.17756 4.26107 4.27347 4.40625 4.43179 4.43332 4.45270 4.50091 4.57922 4.62982 4.68628 4.73827 4.75742 4.78089 4.84320 4.95602 4.96764 4.99505 5.20556 5.22268 5.28252 5.31852 5.32320 5.46133 5.47189 5.59943 5.68234 5.80527 6.05904 6.07253 6.25749 6.48555 6.71924 6.74933 7.29518 8.87099 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006982 B = 0.003241 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4009.633871 B = 8637.507957 C =12213.987806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.165 4.165 5 C -0.107 4.107 6 C -0.082 4.082 7 C 0.110 3.890 8 N -0.695 5.695 9 C 0.094 3.906 10 C -0.149 4.149 11 H 0.103 0.897 12 C -0.183 4.183 13 C -0.146 4.146 14 H 0.109 0.891 15 C -0.122 4.122 16 C -0.161 4.161 17 C 0.068 3.932 18 O -0.337 6.337 19 C 0.087 3.913 20 C 0.031 3.969 21 C -0.547 4.547 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.978 3.022 26 H -0.263 1.263 27 H -0.281 1.281 28 H -0.263 1.263 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.348 0.652 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.126 0.874 45 H 0.055 0.945 46 H 0.058 0.942 47 H -0.004 1.004 48 H -0.005 1.005 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 25.427 -3.155 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.028 3.972 4 C -0.183 4.183 5 C -0.125 4.125 6 C -0.083 4.083 7 C -0.018 4.018 8 N -0.327 5.327 9 C -0.035 4.035 10 C -0.168 4.168 11 H 0.121 0.879 12 C -0.220 4.220 13 C -0.165 4.165 14 H 0.127 0.873 15 C -0.179 4.179 16 C -0.181 4.181 17 C 0.022 3.978 18 O -0.252 6.252 19 C 0.012 3.988 20 C -0.006 4.006 21 C -0.584 4.584 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.571 5.571 25 Si 0.801 3.199 26 H -0.187 1.187 27 H -0.206 1.206 28 H -0.188 1.188 29 H 0.088 0.912 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.144 0.856 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.015 0.985 48 H 0.014 0.986 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.987 24.503 -3.219 28.398 hybrid contribution 0.305 -0.105 0.234 0.398 sum -13.683 24.399 -2.985 28.132 Atomic orbital electron populations 1.23348 0.76453 1.05264 1.02512 1.86189 1.23502 1.26779 1.89226 1.18660 0.88981 0.86352 1.03170 1.21310 1.00981 0.90387 1.05623 1.21041 0.93248 0.97861 1.00372 1.19625 0.93705 0.94071 1.00875 1.20745 0.99654 0.91445 0.89957 1.60391 1.30284 1.28922 1.13139 1.21492 0.98985 0.88583 0.94397 1.22328 0.97387 0.99872 0.97173 0.87877 1.23223 0.93985 1.02471 1.02291 1.22496 1.03226 0.89787 1.00944 0.87342 1.21379 1.01306 1.00017 0.95243 1.21060 1.00564 0.90760 1.05703 1.18912 0.89458 0.86748 1.02644 1.86172 1.20277 1.29881 1.88823 1.22815 0.75932 0.99910 1.00105 1.18933 0.94805 0.91125 0.95761 1.21356 0.91025 0.93713 1.52340 0.91163 1.26074 1.05059 0.94542 0.94066 1.70126 1.37776 0.98650 1.50511 0.85315 0.77550 0.77587 0.79481 1.18724 1.20622 1.18805 0.91155 0.87300 0.91113 0.81744 0.82253 0.91892 0.90935 0.83360 0.93577 0.91570 0.89212 0.89066 0.91710 0.91333 0.92798 0.85591 0.92643 0.92413 0.98525 0.98644 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.61 10.28 -79.54 -0.82 -12.43 16 3 C 0.07 2.45 6.70 22.57 0.15 2.60 16 4 C -0.16 -3.78 9.04 22.35 0.20 -3.58 16 5 C -0.11 -2.15 9.69 22.27 0.22 -1.93 16 6 C -0.08 -2.01 5.39 -19.86 -0.11 -2.11 16 7 C 0.11 2.12 5.81 85.55 0.50 2.61 16 8 N -0.70 -13.22 6.49 -517.92 -3.36 -16.59 16 9 C 0.09 1.50 5.97 86.30 0.51 2.02 16 10 C -0.15 -2.35 5.67 -10.79 -0.06 -2.41 16 11 H 0.10 1.67 8.13 -2.39 -0.02 1.65 16 12 C -0.18 -3.03 9.83 30.62 0.30 -2.73 16 13 C -0.15 -1.95 6.13 -10.77 -0.07 -2.01 16 14 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 15 C -0.12 -1.35 10.19 71.98 0.73 -0.62 16 16 C -0.16 -5.32 8.69 22.35 0.19 -5.13 16 17 C 0.07 2.64 6.70 22.57 0.15 2.79 16 18 O -0.34 -16.05 9.92 -79.63 -0.79 -16.84 16 19 C 0.09 4.16 4.68 71.98 0.34 4.49 16 20 C 0.03 1.80 5.34 29.85 0.16 1.96 16 21 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 22 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 23 C 0.00 0.06 5.46 84.66 0.46 0.52 16 24 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 25 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 29 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 30 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 32 H 0.17 2.54 6.30 -2.91 -0.02 2.52 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.35 5.81 8.71 -89.69 -0.78 5.03 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.16 7.88 -2.39 -0.02 1.15 16 39 H 0.09 1.55 8.03 -2.39 -0.02 1.54 16 40 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 41 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.05 0.63 7.90 -2.39 -0.02 0.61 16 44 H 0.13 4.32 6.30 -2.91 -0.02 4.30 16 45 H 0.06 2.54 7.66 -2.39 -0.02 2.52 16 46 H 0.06 2.59 7.66 -2.39 -0.02 2.57 16 47 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 48 H 0.00 -0.31 8.14 -2.39 -0.02 -0.33 16 49 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -74.29 404.26 2.51 -71.78 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.14 Total: 19.58 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 5.03 Total: -34.04 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.08 Total: -74.82 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.61 Total: -29.27 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -74.29 2.51 -71.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299446660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.703 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds