Wall clock time and date at job start Tue Mar 31 2020 12:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 117.00293 * 2 1 4 4 C 1.38567 * 120.07426 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00158 * 179.70636 * 4 3 2 6 6 C 1.38261 * 120.14236 * 0.54304 * 5 4 3 7 7 C 1.50697 * 119.92224 * 179.72855 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.72602 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.08997 * 115.55629 * 29.41778 * 10 9 8 12 12 C 1.53006 * 117.49960 * 243.74546 * 10 9 8 13 13 C 1.53001 * 117.50193 * 175.08884 * 10 9 8 14 14 H 1.08999 * 117.50291 * 214.97824 * 13 10 9 15 15 C 1.53006 * 117.49515 * 359.97438 * 13 10 9 16 16 C 1.38240 * 120.14642 * 359.45847 * 6 5 4 17 17 C 1.38566 * 119.99920 * 0.26674 * 16 6 5 18 18 O 1.35994 * 120.06925 * 179.97438 * 17 16 6 19 19 C 1.42898 * 117.00286 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47300 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.47591 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99444 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00346 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00052 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99901 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47194 * 89.99971 * 25 23 21 27 27 H 1.48501 * 109.46965 * 210.00023 * 25 23 21 28 28 H 1.48493 * 109.47216 * 329.99917 * 25 23 21 29 29 H 1.08992 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46575 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.46872 * 59.99478 * 1 2 3 32 32 H 1.08001 * 119.99447 * 359.95944 * 4 3 2 33 33 H 1.07998 * 119.93136 * 180.29738 * 5 4 3 34 34 H 1.09004 * 109.46763 * 149.73043 * 7 6 5 35 35 H 1.08995 * 109.47483 * 29.72700 * 7 6 5 36 36 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 37 37 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 38 38 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 39 39 H 1.09003 * 117.49471 * 0.02562 * 12 10 9 40 40 H 1.08997 * 117.49646 * 145.01706 * 12 10 9 41 41 H 1.08998 * 109.47288 * 60.00061 * 15 13 10 42 42 H 1.08996 * 109.47052 * 180.02562 * 15 13 10 43 43 H 1.09004 * 109.47090 * 299.99754 * 15 13 10 44 44 H 1.08005 * 119.99840 * 180.25385 * 16 6 5 45 45 H 1.09008 * 109.46826 * 300.00241 * 19 18 17 46 46 H 1.08992 * 109.47100 * 59.99910 * 19 18 17 47 47 H 1.08998 * 109.47339 * 300.00388 * 20 19 18 48 48 H 1.09009 * 109.47360 * 59.99862 * 20 19 18 49 49 H 0.96997 * 120.00157 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0005 5 6 1.9226 3.6057 0.0067 6 6 3.3032 3.6797 0.0009 7 6 3.9839 5.0242 0.0015 8 7 4.2050 5.4616 -1.3833 9 6 4.8690 6.7715 -1.4220 10 6 5.0812 7.1928 -2.8774 11 1 4.3471 6.8140 -3.5884 12 6 6.5232 7.3465 -3.3653 13 6 5.6574 8.5871 -3.1324 14 1 5.3026 9.1253 -4.0113 15 6 5.9767 9.4535 -1.9124 16 6 4.0604 2.5232 0.0004 17 6 3.4360 1.2862 -0.0001 18 8 4.1796 0.1475 -0.0012 19 6 5.6003 0.3004 -0.0024 20 6 6.2618 -1.0792 -0.0042 21 6 7.7601 -0.9180 -0.0061 22 1 8.1969 0.0698 -0.0065 23 6 8.5733 -2.0314 -0.0074 24 7 8.0414 -3.2342 -0.0074 25 14 10.4306 -1.8314 -0.0090 26 1 10.9241 -1.7791 1.3906 27 1 11.0519 -2.9837 -0.7102 28 1 10.7924 -0.5727 -0.7088 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2148 2.3197 0.0003 33 1 1.3345 4.5115 0.0119 34 1 4.9421 4.9460 0.5152 35 1 3.3541 5.7502 0.5156 36 1 4.7325 4.7738 -1.8999 37 1 4.2456 7.5098 -0.9176 38 1 5.8332 6.7051 -0.9183 39 1 7.3207 7.1469 -2.6494 40 1 6.7376 7.0689 -4.3973 41 1 6.7139 8.9467 -1.2897 42 1 6.3767 10.4122 -2.2423 43 1 5.0664 9.6190 -1.3361 44 1 5.1388 2.5838 0.0000 45 1 5.9058 0.8506 -0.8925 46 1 5.9074 0.8499 0.8874 47 1 5.9564 -1.6297 0.8856 48 1 5.9547 -1.6283 -0.8943 49 1 8.6135 -4.0175 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299446668.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:47 Heat of formation + Delta-G solvation = -40.509565 kcal Electronic energy + Delta-G solvation = -25988.916594 eV Core-core repulsion = 22302.928769 eV Total energy + Delta-G solvation = -3685.987825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31433 -38.71112 -38.12241 -37.22891 -35.06225 -33.34429 -30.96627 -30.52589 -29.37168 -28.81651 -27.65153 -26.29395 -25.05856 -23.80107 -22.39074 -21.71152 -21.22378 -20.46418 -19.74211 -18.22463 -17.01626 -16.59922 -16.31202 -15.96739 -15.80626 -15.38392 -14.96286 -14.69282 -14.59287 -14.54719 -14.41632 -13.92172 -13.75004 -13.47145 -13.08685 -12.74715 -12.61923 -12.53326 -12.30402 -12.17500 -11.81971 -11.77297 -11.52184 -11.46511 -11.27677 -11.03647 -10.92682 -10.81510 -10.75982 -10.53537 -10.17411 -10.06110 -9.81075 -9.63540 -9.27327 -8.68144 -8.45388 -8.42345 -7.46639 -6.08032 -4.12709 1.41704 1.62948 3.28124 3.33960 3.36685 3.43586 3.44938 3.75781 3.83592 4.16637 4.42021 4.43548 4.57982 4.73621 4.80288 4.88845 4.99566 5.05251 5.14128 5.19148 5.20932 5.27024 5.28172 5.33333 5.41494 5.46089 5.51129 5.52287 5.55263 5.59316 5.62160 5.66398 5.71735 5.86436 5.96759 6.02762 6.06379 6.06591 6.31766 6.37393 6.64683 6.74157 6.82156 6.89123 7.21492 7.35525 7.58585 7.68731 7.86182 8.13432 8.26757 8.92959 9.51294 11.03567 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006959 B = 0.003354 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4022.354302 B = 8345.838010 C =11985.027352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.090 3.910 4 C -0.176 4.176 5 C -0.108 4.108 6 C -0.083 4.083 7 C 0.105 3.895 8 N -0.684 5.684 9 C 0.090 3.910 10 C -0.147 4.147 11 H 0.112 0.888 12 C -0.180 4.180 13 C -0.152 4.152 14 H 0.103 0.897 15 C -0.124 4.124 16 C -0.172 4.172 17 C 0.119 3.881 18 O -0.304 6.304 19 C 0.065 3.935 20 C 0.026 3.974 21 C -0.526 4.526 22 H 0.057 0.943 23 C 0.060 3.940 24 N -0.889 5.889 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.346 0.654 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.134 0.866 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 21.425 -2.374 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.127 4.127 6 C -0.084 4.084 7 C -0.024 4.024 8 N -0.315 5.315 9 C -0.039 4.039 10 C -0.166 4.166 11 H 0.130 0.870 12 C -0.217 4.217 13 C -0.171 4.171 14 H 0.121 0.879 15 C -0.181 4.181 16 C -0.191 4.191 17 C 0.072 3.928 18 O -0.218 6.218 19 C -0.009 4.009 20 C -0.011 4.011 21 C -0.564 4.564 22 H 0.076 0.924 23 C -0.142 4.142 24 N -0.527 5.527 25 Si 0.725 3.275 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.164 0.836 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.151 0.849 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.046 0.954 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.687 21.094 -2.433 24.735 hybrid contribution 1.836 0.040 0.180 1.845 sum -10.852 21.133 -2.254 23.863 Atomic orbital electron populations 1.23012 0.79246 1.03706 1.00764 1.86242 1.20407 1.25990 1.88994 1.18349 0.89433 0.85086 1.02668 1.20956 0.99508 0.91568 1.07428 1.20540 0.93584 0.96630 1.01917 1.19329 0.93468 0.93566 1.02045 1.20779 0.98639 0.93340 0.89619 1.60519 1.53327 1.04439 1.13205 1.21483 0.96720 0.91485 0.94183 1.22397 0.96847 0.99509 0.97797 0.86974 1.23231 0.93973 1.02030 1.02452 1.22359 1.04483 0.89852 1.00397 0.87914 1.21350 1.01383 0.99079 0.96255 1.21027 1.00463 0.90747 1.06909 1.18396 0.88503 0.87002 0.98876 1.86283 1.20880 1.27284 1.87314 1.23312 0.75025 1.03199 0.99351 1.19106 0.94112 0.88951 0.98934 1.20968 0.90366 0.92864 1.52198 0.92446 1.24987 0.99088 0.95137 0.94966 1.69980 1.35416 0.97598 1.49706 0.86501 0.84976 0.77787 0.78192 1.20515 1.21043 1.19793 0.88441 0.93060 0.93018 0.85243 0.86021 0.94351 0.90292 0.83557 0.90725 0.95077 0.88829 0.88813 0.92517 0.92269 0.92142 0.84856 0.93319 0.93346 0.95383 0.95360 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.30 -5.05 10.28 -34.23 -0.35 -5.40 16 3 C 0.09 1.50 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.31 9.04 -39.46 -0.36 -2.67 16 5 C -0.11 -1.34 9.69 -39.57 -0.38 -1.73 16 6 C -0.08 -1.10 5.39 -104.61 -0.56 -1.66 16 7 C 0.10 1.14 5.81 -4.98 -0.03 1.11 16 8 N -0.68 -7.24 6.49 -115.06 -0.75 -7.98 16 9 C 0.09 0.82 5.04 -3.82 -0.02 0.80 16 10 C -0.15 -1.27 5.95 -90.62 -0.54 -1.81 16 11 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 12 C -0.18 -1.49 9.83 -26.69 -0.26 -1.75 16 13 C -0.15 -1.16 6.41 -90.58 -0.58 -1.74 16 14 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 15 C -0.12 -0.83 9.20 37.16 0.34 -0.49 16 16 C -0.17 -2.71 8.69 -39.46 -0.34 -3.05 16 17 C 0.12 2.20 6.70 -39.12 -0.26 1.94 16 18 O -0.30 -6.67 9.92 -34.22 -0.34 -7.01 16 19 C 0.07 1.44 4.68 37.16 0.17 1.61 16 20 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 21 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 25 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 31 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 32 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.35 3.89 8.72 -39.29 -0.34 3.54 16 37 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 38 H 0.03 0.29 7.88 -51.93 -0.41 -0.12 16 39 H 0.09 0.79 7.94 -51.93 -0.41 0.37 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.39 7.84 -51.93 -0.41 -0.02 16 44 H 0.13 2.06 6.30 -52.48 -0.33 1.73 16 45 H 0.05 1.01 7.66 -51.92 -0.40 0.62 16 46 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -31.70 402.25 -10.72 -42.41 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.40 Total: 1.43 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -2.65 Total: -19.86 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.01 Total: -34.02 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.69 Total: -12.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.70 -10.72 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299446668.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.902 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds