Wall clock time and date at job start Tue Mar 31 2020 12:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 117.00293 * 2 1 4 4 C 1.38567 * 120.07426 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00158 * 179.70636 * 4 3 2 6 6 C 1.38261 * 120.14236 * 0.54304 * 5 4 3 7 7 C 1.50697 * 119.92224 * 179.72855 * 6 5 4 8 8 N 1.46901 * 109.46943 * 269.72602 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.08997 * 115.55629 * 29.41778 * 10 9 8 12 12 C 1.53006 * 117.49960 * 243.74546 * 10 9 8 13 13 C 1.53001 * 117.50193 * 175.08884 * 10 9 8 14 14 H 1.08999 * 117.50291 * 214.97824 * 13 10 9 15 15 C 1.53006 * 117.49515 * 359.97438 * 13 10 9 16 16 C 1.38240 * 120.14642 * 359.45847 * 6 5 4 17 17 C 1.38566 * 119.99920 * 0.26674 * 16 6 5 18 18 O 1.35994 * 120.06925 * 179.97438 * 17 16 6 19 19 C 1.42898 * 117.00286 * 359.97438 * 18 17 16 20 20 C 1.52997 * 109.47300 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.47591 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99444 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00346 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00052 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99901 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47194 * 89.99971 * 25 23 21 27 27 H 1.48501 * 109.46965 * 210.00023 * 25 23 21 28 28 H 1.48493 * 109.47216 * 329.99917 * 25 23 21 29 29 H 1.08992 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46575 * 299.99981 * 1 2 3 31 31 H 1.08998 * 109.46872 * 59.99478 * 1 2 3 32 32 H 1.08001 * 119.99447 * 359.95944 * 4 3 2 33 33 H 1.07998 * 119.93136 * 180.29738 * 5 4 3 34 34 H 1.09004 * 109.46763 * 149.73043 * 7 6 5 35 35 H 1.08995 * 109.47483 * 29.72700 * 7 6 5 36 36 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 37 37 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 38 38 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 39 39 H 1.09003 * 117.49471 * 0.02562 * 12 10 9 40 40 H 1.08997 * 117.49646 * 145.01706 * 12 10 9 41 41 H 1.08998 * 109.47288 * 60.00061 * 15 13 10 42 42 H 1.08996 * 109.47052 * 180.02562 * 15 13 10 43 43 H 1.09004 * 109.47090 * 299.99754 * 15 13 10 44 44 H 1.08005 * 119.99840 * 180.25385 * 16 6 5 45 45 H 1.09008 * 109.46826 * 300.00241 * 19 18 17 46 46 H 1.08992 * 109.47100 * 59.99910 * 19 18 17 47 47 H 1.08998 * 109.47339 * 300.00388 * 20 19 18 48 48 H 1.09009 * 109.47360 * 59.99862 * 20 19 18 49 49 H 0.96997 * 120.00157 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3748 0.0005 5 6 1.9226 3.6057 0.0067 6 6 3.3032 3.6797 0.0009 7 6 3.9839 5.0242 0.0015 8 7 4.2050 5.4616 -1.3833 9 6 4.8690 6.7715 -1.4220 10 6 5.0812 7.1928 -2.8774 11 1 4.3471 6.8140 -3.5884 12 6 6.5232 7.3465 -3.3653 13 6 5.6574 8.5871 -3.1324 14 1 5.3026 9.1253 -4.0113 15 6 5.9767 9.4535 -1.9124 16 6 4.0604 2.5232 0.0004 17 6 3.4360 1.2862 -0.0001 18 8 4.1796 0.1475 -0.0012 19 6 5.6003 0.3004 -0.0024 20 6 6.2618 -1.0792 -0.0042 21 6 7.7601 -0.9180 -0.0061 22 1 8.1969 0.0698 -0.0065 23 6 8.5733 -2.0314 -0.0074 24 7 8.0414 -3.2342 -0.0074 25 14 10.4306 -1.8314 -0.0090 26 1 10.9241 -1.7791 1.3906 27 1 11.0519 -2.9837 -0.7102 28 1 10.7924 -0.5727 -0.7088 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2148 2.3197 0.0003 33 1 1.3345 4.5115 0.0119 34 1 4.9421 4.9460 0.5152 35 1 3.3541 5.7502 0.5156 36 1 4.7325 4.7738 -1.8999 37 1 4.2456 7.5098 -0.9176 38 1 5.8332 6.7051 -0.9183 39 1 7.3207 7.1469 -2.6494 40 1 6.7376 7.0689 -4.3973 41 1 6.7139 8.9467 -1.2897 42 1 6.3767 10.4122 -2.2423 43 1 5.0664 9.6190 -1.3361 44 1 5.1388 2.5838 0.0000 45 1 5.9058 0.8506 -0.8925 46 1 5.9074 0.8499 0.8874 47 1 5.9564 -1.6297 0.8856 48 1 5.9547 -1.6283 -0.8943 49 1 8.6135 -4.0175 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299446668.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:46 Heat of formation + Delta-G solvation = -58.857975 kcal Electronic energy + Delta-G solvation = -25989.712241 eV Core-core repulsion = 22302.928769 eV Total energy + Delta-G solvation = -3686.783472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52209 -39.47783 -39.39220 -38.34517 -35.98615 -35.43493 -32.55992 -31.74009 -30.79112 -29.44070 -28.53763 -27.25960 -26.89720 -24.71150 -23.92672 -22.56199 -22.33590 -21.90575 -20.42556 -19.47964 -18.63457 -17.79727 -17.59153 -17.17432 -17.08071 -16.54717 -16.33972 -16.26109 -15.67780 -15.50756 -15.28932 -15.08479 -14.55304 -14.33825 -14.25198 -14.15118 -13.99194 -13.64636 -13.34674 -13.12314 -13.06554 -12.85241 -12.71990 -12.66094 -12.53820 -12.38330 -12.16643 -12.03613 -11.93197 -11.84849 -11.59500 -11.59038 -11.41119 -10.80336 -10.68700 -10.63185 -9.70248 -9.38382 -8.71240 -8.27265 -6.41604 0.29862 0.46624 1.39612 1.42460 1.53526 2.26626 2.43084 2.50954 2.64794 2.84804 3.06831 3.33364 3.78824 3.81992 3.85168 3.96461 4.05855 4.08913 4.16897 4.24855 4.28569 4.39744 4.43265 4.43407 4.45392 4.49096 4.57400 4.61653 4.67713 4.73058 4.74785 4.82618 4.87699 4.92307 4.97866 5.00849 5.19295 5.20848 5.29268 5.31466 5.32340 5.44962 5.45155 5.61181 5.67375 5.80145 6.04414 6.05835 6.24858 6.35265 6.71356 6.74341 7.28592 8.86174 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006959 B = 0.003354 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4022.354302 B = 8345.838010 C =11985.027352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.166 4.166 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.109 3.891 8 N -0.687 5.687 9 C 0.095 3.905 10 C -0.153 4.153 11 H 0.105 0.895 12 C -0.187 4.187 13 C -0.144 4.144 14 H 0.110 0.890 15 C -0.124 4.124 16 C -0.173 4.173 17 C 0.070 3.930 18 O -0.336 6.336 19 C 0.086 3.914 20 C 0.030 3.970 21 C -0.545 4.545 22 H 0.071 0.929 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.978 3.022 26 H -0.269 1.269 27 H -0.281 1.281 28 H -0.258 1.258 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.340 0.660 37 H 0.083 0.917 38 H 0.029 0.971 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.129 0.871 45 H 0.058 0.942 46 H 0.058 0.942 47 H -0.005 1.005 48 H -0.005 1.005 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 24.643 -2.309 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.029 3.971 4 C -0.184 4.184 5 C -0.113 4.113 6 C -0.083 4.083 7 C -0.020 4.020 8 N -0.318 5.318 9 C -0.034 4.034 10 C -0.172 4.172 11 H 0.123 0.877 12 C -0.224 4.224 13 C -0.163 4.163 14 H 0.128 0.872 15 C -0.181 4.181 16 C -0.193 4.193 17 C 0.025 3.975 18 O -0.251 6.251 19 C 0.012 3.988 20 C -0.007 4.007 21 C -0.583 4.583 22 H 0.089 0.911 23 C -0.198 4.198 24 N -0.571 5.571 25 Si 0.801 3.199 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.182 1.182 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.055 0.945 35 H 0.118 0.882 36 H 0.157 0.843 37 H 0.102 0.898 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.147 0.853 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.014 0.986 48 H 0.014 0.986 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.205 24.345 -2.367 27.797 hybrid contribution 1.803 -0.903 0.146 2.021 sum -11.403 23.443 -2.221 26.163 Atomic orbital electron populations 1.23344 0.76469 1.05262 1.02500 1.86186 1.23487 1.26758 1.89227 1.18657 0.89057 0.86278 1.03148 1.21334 1.01003 0.90450 1.05630 1.21002 0.93433 0.97628 0.99268 1.19610 0.94045 0.93699 1.00909 1.20792 0.98797 0.92382 0.89996 1.60555 1.53548 1.04859 1.12841 1.21478 0.96652 0.90799 0.94471 1.22347 0.96796 1.00609 0.97442 0.87715 1.23260 0.93787 1.02917 1.02449 1.22457 1.03307 0.89495 1.00997 0.87197 1.21372 1.01606 0.99259 0.95841 1.21089 1.00516 0.90844 1.06833 1.18850 0.89377 0.86705 1.02611 1.86180 1.20284 1.29840 1.88819 1.22824 0.75926 0.99927 1.00162 1.18938 0.94818 0.91187 0.95759 1.21383 0.90993 0.93720 1.52215 0.91065 1.26074 1.05031 0.94565 0.94094 1.70133 1.37711 0.98686 1.50577 0.85264 0.77659 0.78301 0.78708 1.19459 1.20598 1.18222 0.87249 0.91128 0.91226 0.81876 0.82584 0.94503 0.88233 0.84276 0.89840 0.95261 0.89144 0.88734 0.92866 0.91357 0.91586 0.85317 0.92403 0.92405 0.98620 0.98623 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.60 10.28 -79.65 -0.82 -12.42 16 3 C 0.07 2.45 6.70 22.57 0.15 2.61 16 4 C -0.17 -3.94 9.04 22.35 0.20 -3.74 16 5 C -0.09 -2.04 9.69 22.27 0.22 -1.83 16 6 C -0.08 -2.01 5.39 -19.86 -0.11 -2.11 16 7 C 0.11 2.09 5.81 85.56 0.50 2.59 16 8 N -0.69 -13.21 6.49 -517.93 -3.36 -16.58 16 9 C 0.09 1.52 5.04 86.30 0.44 1.96 16 10 C -0.15 -2.43 5.95 -10.79 -0.06 -2.49 16 11 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 12 C -0.19 -2.90 9.83 30.62 0.30 -2.60 16 13 C -0.14 -1.93 6.41 -10.77 -0.07 -2.00 16 14 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 15 C -0.12 -1.40 9.20 71.98 0.66 -0.74 16 16 C -0.17 -5.48 8.69 22.35 0.19 -5.29 16 17 C 0.07 2.67 6.70 22.57 0.15 2.82 16 18 O -0.34 -15.70 9.92 -79.62 -0.79 -16.49 16 19 C 0.09 3.99 4.68 71.98 0.34 4.33 16 20 C 0.03 1.73 5.34 29.85 0.16 1.89 16 21 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 22 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 23 C 0.00 0.05 5.46 84.65 0.46 0.51 16 24 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 25 Si 0.98 44.13 29.54 68.60 2.03 46.15 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 28 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 29 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 31 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 32 H 0.16 2.69 6.30 -2.91 -0.02 2.67 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.04 0.73 8.08 -2.39 -0.02 0.71 16 35 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.34 7.29 8.72 -89.69 -0.78 6.51 16 37 H 0.08 1.20 7.77 -2.39 -0.02 1.19 16 38 H 0.03 0.49 7.88 -2.39 -0.02 0.47 16 39 H 0.09 1.45 7.94 -2.39 -0.02 1.43 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.05 0.64 7.90 -2.39 -0.02 0.62 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.68 7.84 -2.38 -0.02 0.66 16 44 H 0.13 4.05 6.30 -2.91 -0.02 4.04 16 45 H 0.06 2.52 7.66 -2.38 -0.02 2.50 16 46 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 47 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.00 -0.29 8.14 -2.38 -0.02 -0.31 16 49 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -72.08 402.25 2.36 -69.72 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.14 Total: 21.28 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.87 Total: -33.95 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -3.08 Total: -74.31 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.61 Total: -28.90 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.08 2.36 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299446668.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.865 kcal (2) G-P(sol) polarization free energy of solvation -72.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds