Wall clock time and date at job start Tue Mar 31 2020 12:30:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47503 * 2 1
4 4 N 1.46497 * 109.47319 * 120.00315 * 2 1 3
5 5 C 1.39668 * 119.99761 * 275.00170 * 4 2 1
6 6 C 1.38977 * 120.04905 * 359.97438 * 5 4 2
7 7 C 1.38107 * 120.03448 * 179.97438 * 6 5 4
8 8 C 1.38215 * 120.13115 * 359.97438 * 7 6 5
9 9 C 1.38767 * 120.09251 * 0.02562 * 8 7 6
10 10 O 1.35903 * 120.01799 * 179.97438 * 9 8 7
11 11 C 1.42903 * 116.99856 * 359.97438 * 10 9 8
12 12 C 1.52995 * 109.46934 * 179.97438 * 11 10 9
13 13 C 1.50703 * 109.46890 * 180.02562 * 12 11 10
14 14 H 1.07998 * 119.99972 * 0.02562 * 13 12 11
15 15 C 1.37878 * 119.99614 * 179.97438 * 13 12 11
16 16 N 1.31517 * 119.99891 * 180.02562 * 15 13 12
17 17 Si 1.86799 * 120.00258 * 0.02562 * 15 13 12
18 18 H 1.48506 * 109.47275 * 89.99914 * 17 15 13
19 19 H 1.48503 * 109.46944 * 209.99504 * 17 15 13
20 20 H 1.48495 * 109.46991 * 329.99666 * 17 15 13
21 21 C 1.38616 * 119.96596 * 359.74651 * 9 8 7
22 22 C 1.53006 * 109.47207 * 239.99925 * 2 1 3
23 23 C 1.53001 * 109.86557 * 64.29727 * 22 2 1
24 24 C 1.54093 * 109.87956 * 185.30846 * 22 2 1
25 25 C 1.54809 * 104.18968 * 121.45793 * 24 22 2
26 26 C 1.54995 * 102.09079 * 20.87593 * 25 24 22
27 27 O 1.43746 * 109.87802 * 303.29662 * 22 2 1
28 28 H 1.08999 * 109.46789 * 60.00192 * 1 2 3
29 29 H 1.09005 * 109.46925 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47090 * 300.00025 * 1 2 3
31 31 H 0.97006 * 120.00547 * 94.99209 * 4 2 1
32 32 H 1.08004 * 119.97606 * 359.95498 * 6 5 4
33 33 H 1.08005 * 119.93594 * 179.97438 * 7 6 5
34 34 H 1.08006 * 119.95322 * 180.02562 * 8 7 6
35 35 H 1.08997 * 109.47557 * 300.00490 * 11 10 9
36 36 H 1.08997 * 109.46746 * 60.00439 * 11 10 9
37 37 H 1.08996 * 109.47696 * 300.00148 * 12 11 10
38 38 H 1.09002 * 109.47331 * 60.00642 * 12 11 10
39 39 H 0.96996 * 120.00413 * 180.02562 * 16 15 13
40 40 H 1.07997 * 120.06661 * 180.25433 * 21 9 8
41 41 H 1.08997 * 109.46764 * 60.00396 * 23 22 2
42 42 H 1.09005 * 109.46700 * 179.97438 * 23 22 2
43 43 H 1.08991 * 109.47505 * 299.99933 * 23 22 2
44 44 H 1.09008 * 110.48617 * 240.13472 * 24 22 2
45 45 H 1.09005 * 110.49051 * 2.77579 * 24 22 2
46 46 H 1.08992 * 110.90949 * 139.07772 * 25 24 22
47 47 H 1.09008 * 110.90380 * 262.64615 * 25 24 22
48 48 H 1.09007 * 110.61558 * 81.48240 * 26 25 24
49 49 H 1.09004 * 110.61528 * 204.31756 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1517 0.0061 2.3992
6 6 1.8219 1.3547 2.4627
7 6 1.9534 2.0432 3.6526
8 6 2.4124 1.3936 4.7830
9 6 2.7433 0.0472 4.7257
10 8 3.1950 -0.5899 5.8379
11 6 3.3050 0.1881 7.0315
12 6 3.8251 -0.6934 8.1687
13 6 3.9406 0.1269 9.4276
14 1 3.6697 1.1723 9.4177
15 6 4.3911 -0.4575 10.5923
16 7 4.4915 0.2582 11.6911
17 14 4.8591 -2.2658 10.6096
18 1 6.2988 -2.4079 10.2745
19 1 4.6074 -2.8293 11.9604
20 1 4.0430 -2.9979 9.6080
21 6 2.6083 -0.6488 3.5346
22 6 2.0400 -0.7213 -1.2493
23 6 1.6250 0.0525 -2.5023
24 6 3.5751 -0.8439 -1.1935
25 6 3.8370 -2.3679 -1.2669
26 6 2.5193 -2.8941 -1.8909
27 8 1.5033 -2.0539 -1.2976
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 2.2490 -1.6319 1.1526
32 1 1.4629 1.8645 1.5808
33 1 1.6971 3.0913 3.7001
34 1 2.5138 1.9348 5.7122
35 1 3.9975 1.0132 6.8650
36 1 2.3253 0.5844 7.2985
37 1 3.1323 -1.5182 8.3352
38 1 4.8048 -1.0901 7.9020
39 1 4.8087 -0.1527 12.5104
40 1 2.8614 -1.6978 3.4891
41 1 2.0501 1.0555 -2.4672
42 1 1.9918 -0.4665 -3.3879
43 1 0.5380 0.1197 -2.5443
44 1 4.0295 -0.3373 -2.0451
45 1 3.9567 -0.4358 -0.2576
46 1 4.6874 -2.5858 -1.9127
47 1 3.9901 -2.7846 -0.2713
48 1 2.5318 -2.7714 -2.9739
49 1 2.3598 -3.9394 -1.6260
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000340319109.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:22
Heat of formation + Delta-G solvation = -67.885165 kcal
Electronic energy + Delta-G solvation = -26681.633666 eV
Core-core repulsion = 22994.458746 eV
Total energy + Delta-G solvation = -3687.174920 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.70191 -39.64102 -37.77419 -35.60222 -33.31289 -32.83640 -32.47222 -31.05845
-30.04161 -28.99651 -28.21745 -26.70646 -25.15949 -23.62942 -22.59832 -21.99909
-21.44173 -20.26618 -20.02018 -18.08197 -17.24647 -16.74550 -16.49222 -15.81196
-15.64417 -15.35499 -15.24779 -14.90950 -14.62587 -14.21557 -14.10394 -13.89183
-13.67204 -13.36813 -13.06996 -12.97390 -12.75391 -12.57217 -12.44899 -12.15508
-12.11028 -12.00221 -11.70533 -11.58256 -11.45801 -11.18348 -11.03997 -10.94249
-10.82170 -10.65879 -10.13964 -10.09833 -10.02322 -9.83965 -9.70995 -9.31121
-8.60055 -7.97552 -7.30914 -6.11173 -4.11695 1.71512 1.86621 3.19327
3.30250 3.37369 3.37907 3.43383 3.96948 4.07382 4.12972 4.26115
4.37200 4.41275 4.55048 4.70351 4.80502 4.94966 5.07406 5.08716
5.11963 5.21380 5.22993 5.30861 5.33968 5.37456 5.42710 5.47960
5.54422 5.56994 5.59367 5.64287 5.71618 5.77461 5.82157 5.99425
6.02360 6.10848 6.12544 6.41066 6.48899 6.50958 6.63134 6.76781
6.86922 7.11284 7.27242 7.41861 7.65181 7.72365 8.03122 8.41703
8.90005 9.49299 11.01387
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.022397 B = 0.002298 C = 0.002151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1249.860921 B =12182.476084 C =13016.640665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.163 3.837
3 H 0.088 0.912
4 N -0.737 5.737
5 C 0.250 3.750
6 C -0.245 4.245
7 C -0.036 4.036
8 C -0.264 4.264
9 C 0.187 3.813
10 O -0.321 6.321
11 C 0.074 3.926
12 C -0.009 4.009
13 C -0.525 4.525
14 H 0.075 0.925
15 C 0.071 3.929
16 N -0.898 5.898
17 Si 0.881 3.119
18 H -0.275 1.275
19 H -0.286 1.286
20 H -0.263 1.263
21 C -0.238 4.238
22 C 0.095 3.905
23 C -0.163 4.163
24 C -0.149 4.149
25 C -0.155 4.155
26 C 0.044 3.956
27 O -0.361 6.361
28 H 0.061 0.939
29 H 0.066 0.934
30 H 0.061 0.939
31 H 0.400 0.600
32 H 0.116 0.884
33 H 0.119 0.881
34 H 0.127 0.873
35 H 0.057 0.943
36 H 0.057 0.943
37 H 0.027 0.973
38 H 0.023 0.977
39 H 0.265 0.735
40 H 0.122 0.878
41 H 0.068 0.932
42 H 0.061 0.939
43 H 0.069 0.931
44 H 0.076 0.924
45 H 0.087 0.913
46 H 0.079 0.921
47 H 0.078 0.922
48 H 0.059 0.941
49 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.072 -1.385 -32.174 32.600
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.057 3.943
3 H 0.106 0.894
4 N -0.367 5.367
5 C 0.147 3.853
6 C -0.268 4.268
7 C -0.055 4.055
8 C -0.285 4.285
9 C 0.139 3.861
10 O -0.234 6.234
11 C 0.000 4.000
12 C -0.047 4.047
13 C -0.563 4.563
14 H 0.093 0.907
15 C -0.131 4.131
16 N -0.537 5.537
17 Si 0.707 3.293
18 H -0.201 1.201
19 H -0.212 1.212
20 H -0.187 1.187
21 C -0.262 4.262
22 C 0.055 3.945
23 C -0.221 4.221
24 C -0.187 4.187
25 C -0.193 4.193
26 C -0.032 4.032
27 O -0.280 6.280
28 H 0.080 0.920
29 H 0.085 0.915
30 H 0.080 0.920
31 H 0.235 0.765
32 H 0.134 0.866
33 H 0.137 0.863
34 H 0.145 0.855
35 H 0.075 0.925
36 H 0.075 0.925
37 H 0.045 0.955
38 H 0.041 0.959
39 H 0.075 0.925
40 H 0.140 0.860
41 H 0.087 0.913
42 H 0.080 0.920
43 H 0.088 0.912
44 H 0.094 0.906
45 H 0.105 0.895
46 H 0.098 0.902
47 H 0.097 0.903
48 H 0.077 0.923
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -5.237 -1.533 -32.004 32.466
hybrid contribution 0.554 -0.963 0.142 1.120
sum -4.683 -2.496 -31.861 32.300
Atomic orbital electron populations
1.22260 0.95326 1.03112 1.01895 1.20943 0.94400 0.95898 0.83073
0.89447 1.44565 1.73340 1.12341 1.06471 1.17356 0.91900 0.90938
0.85110 1.20416 1.14133 0.93262 0.98948 1.20623 0.94424 0.98780
0.91624 1.21150 1.12153 0.94637 1.00546 1.18770 0.90027 0.90528
0.86732 1.86094 1.79198 1.40427 1.17660 1.23052 1.00488 0.94990
0.81483 1.19588 0.96710 0.96286 0.92100 1.20852 1.45327 0.98113
0.92019 0.90725 1.24938 0.94710 0.98163 0.95260 1.69894 1.46649
1.36487 1.00621 0.86756 0.79441 0.85554 0.77510 1.20093 1.21208
1.18742 1.19634 1.15435 1.00523 0.90595 1.22380 0.92798 0.84513
0.94820 1.22263 1.02843 1.00215 0.96752 1.23039 0.94787 0.96937
1.03895 1.23127 0.98437 0.95420 1.02310 1.23588 0.86746 0.95681
0.97219 1.88980 1.38985 1.17860 1.82218 0.92020 0.91540 0.92024
0.76464 0.86624 0.86341 0.85522 0.92509 0.92480 0.95463 0.95908
0.92486 0.85963 0.91311 0.92005 0.91228 0.90552 0.89476 0.90231
0.90343 0.92301 0.88944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.43 9.00 37.16 0.33 -1.10 16
2 C 0.16 1.36 1.56 -67.93 -0.11 1.26 16
3 H 0.09 0.70 6.48 -51.93 -0.34 0.37 16
4 N -0.74 -7.55 4.28 -52.18 -0.22 -7.77 16
5 C 0.25 3.24 6.63 -83.81 -0.56 2.68 16
6 C -0.25 -3.06 8.85 -39.36 -0.35 -3.41 16
7 C -0.04 -0.48 10.03 -39.64 -0.40 -0.88 16
8 C -0.26 -4.26 9.04 -39.39 -0.36 -4.61 16
9 C 0.19 3.30 6.68 -39.25 -0.26 3.04 16
10 O -0.32 -6.52 10.13 -19.44 -0.20 -6.71 16
11 C 0.07 1.57 4.68 37.16 0.17 1.74 16
12 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16
13 C -0.53 -14.98 9.66 -34.44 -0.33 -15.32 16
14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16
15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
16 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16
17 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16
18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16
21 C -0.24 -3.66 9.83 -39.24 -0.39 -4.05 16
22 C 0.09 0.68 0.54 -90.04 -0.05 0.63 16
23 C -0.16 -0.94 8.35 37.16 0.31 -0.63 16
24 C -0.15 -0.99 5.92 -25.21 -0.15 -1.14 16
25 C -0.16 -0.94 7.16 -24.72 -0.18 -1.11 16
26 C 0.04 0.28 7.67 38.21 0.29 0.57 16
27 O -0.36 -3.08 9.77 -35.23 -0.34 -3.43 16
28 H 0.06 0.43 6.58 -51.93 -0.34 0.09 16
29 H 0.07 0.65 7.62 -51.93 -0.40 0.26 16
30 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16
31 H 0.40 4.04 8.27 -40.82 -0.34 3.70 16
32 H 0.12 1.19 6.11 -52.48 -0.32 0.87 16
33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16
34 H 0.13 2.05 6.29 -52.48 -0.33 1.72 16
35 H 0.06 1.16 7.66 -51.93 -0.40 0.77 16
36 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16
37 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16
38 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16
39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16
41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
43 H 0.07 0.41 6.58 -51.93 -0.34 0.07 16
44 H 0.08 0.43 7.70 -51.92 -0.40 0.03 16
45 H 0.09 0.70 7.15 -51.93 -0.37 0.33 16
46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
47 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16
48 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16
49 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
LS Contribution 383.68 15.07 5.78 5.78
Total: -1.00 -31.25 383.68 -9.21 -40.46
By element:
Atomic # 1 Polarization: 10.06 SS G_CDS: -8.11 Total: 1.95 kcal
Atomic # 6 Polarization: -18.46 SS G_CDS: -2.23 Total: -20.69 kcal
Atomic # 7 Polarization: -35.06 SS G_CDS: 0.55 Total: -34.50 kcal
Atomic # 8 Polarization: -9.60 SS G_CDS: -0.54 Total: -10.14 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -31.25 -9.21 -40.46 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340319109.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.428 kcal
(2) G-P(sol) polarization free energy of solvation -31.246 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds