Wall clock time and date at job start Tue Mar 31 2020 12:30:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08997 * 109.47503 * 2 1
4 4 N 1.46497 * 109.47319 * 120.00315 * 2 1 3
5 5 C 1.39668 * 119.99761 * 275.00170 * 4 2 1
6 6 C 1.38977 * 120.04905 * 359.97438 * 5 4 2
7 7 C 1.38107 * 120.03448 * 179.97438 * 6 5 4
8 8 C 1.38215 * 120.13115 * 359.97438 * 7 6 5
9 9 C 1.38767 * 120.09251 * 0.02562 * 8 7 6
10 10 O 1.35903 * 120.01799 * 179.97438 * 9 8 7
11 11 C 1.42903 * 116.99856 * 359.97438 * 10 9 8
12 12 C 1.52995 * 109.46934 * 179.97438 * 11 10 9
13 13 C 1.50703 * 109.46890 * 180.02562 * 12 11 10
14 14 H 1.07998 * 119.99972 * 0.02562 * 13 12 11
15 15 C 1.37878 * 119.99614 * 179.97438 * 13 12 11
16 16 N 1.31517 * 119.99891 * 180.02562 * 15 13 12
17 17 Si 1.86799 * 120.00258 * 0.02562 * 15 13 12
18 18 H 1.48506 * 109.47275 * 89.99914 * 17 15 13
19 19 H 1.48503 * 109.46944 * 209.99504 * 17 15 13
20 20 H 1.48495 * 109.46991 * 329.99666 * 17 15 13
21 21 C 1.38616 * 119.96596 * 359.74651 * 9 8 7
22 22 C 1.53006 * 109.47207 * 239.99925 * 2 1 3
23 23 C 1.53001 * 109.86557 * 64.29727 * 22 2 1
24 24 C 1.54093 * 109.87956 * 185.30846 * 22 2 1
25 25 C 1.54809 * 104.18968 * 121.45793 * 24 22 2
26 26 C 1.54995 * 102.09079 * 20.87593 * 25 24 22
27 27 O 1.43746 * 109.87802 * 303.29662 * 22 2 1
28 28 H 1.08999 * 109.46789 * 60.00192 * 1 2 3
29 29 H 1.09005 * 109.46925 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47090 * 300.00025 * 1 2 3
31 31 H 0.97006 * 120.00547 * 94.99209 * 4 2 1
32 32 H 1.08004 * 119.97606 * 359.95498 * 6 5 4
33 33 H 1.08005 * 119.93594 * 179.97438 * 7 6 5
34 34 H 1.08006 * 119.95322 * 180.02562 * 8 7 6
35 35 H 1.08997 * 109.47557 * 300.00490 * 11 10 9
36 36 H 1.08997 * 109.46746 * 60.00439 * 11 10 9
37 37 H 1.08996 * 109.47696 * 300.00148 * 12 11 10
38 38 H 1.09002 * 109.47331 * 60.00642 * 12 11 10
39 39 H 0.96996 * 120.00413 * 180.02562 * 16 15 13
40 40 H 1.07997 * 120.06661 * 180.25433 * 21 9 8
41 41 H 1.08997 * 109.46764 * 60.00396 * 23 22 2
42 42 H 1.09005 * 109.46700 * 179.97438 * 23 22 2
43 43 H 1.08991 * 109.47505 * 299.99933 * 23 22 2
44 44 H 1.09008 * 110.48617 * 240.13472 * 24 22 2
45 45 H 1.09005 * 110.49051 * 2.77579 * 24 22 2
46 46 H 1.08992 * 110.90949 * 139.07772 * 25 24 22
47 47 H 1.09008 * 110.90380 * 262.64615 * 25 24 22
48 48 H 1.09007 * 110.61558 * 81.48240 * 26 25 24
49 49 H 1.09004 * 110.61528 * 204.31756 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6907 1.1961
5 6 2.1517 0.0061 2.3992
6 6 1.8219 1.3547 2.4627
7 6 1.9534 2.0432 3.6526
8 6 2.4124 1.3936 4.7830
9 6 2.7433 0.0472 4.7257
10 8 3.1950 -0.5899 5.8379
11 6 3.3050 0.1881 7.0315
12 6 3.8251 -0.6934 8.1687
13 6 3.9406 0.1269 9.4276
14 1 3.6697 1.1723 9.4177
15 6 4.3911 -0.4575 10.5923
16 7 4.4915 0.2582 11.6911
17 14 4.8591 -2.2658 10.6096
18 1 6.2988 -2.4079 10.2745
19 1 4.6074 -2.8293 11.9604
20 1 4.0430 -2.9979 9.6080
21 6 2.6083 -0.6488 3.5346
22 6 2.0400 -0.7213 -1.2493
23 6 1.6250 0.0525 -2.5023
24 6 3.5751 -0.8439 -1.1935
25 6 3.8370 -2.3679 -1.2669
26 6 2.5193 -2.8941 -1.8909
27 8 1.5033 -2.0539 -1.2976
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 2.2490 -1.6319 1.1526
32 1 1.4629 1.8645 1.5808
33 1 1.6971 3.0913 3.7001
34 1 2.5138 1.9348 5.7122
35 1 3.9975 1.0132 6.8650
36 1 2.3253 0.5844 7.2985
37 1 3.1323 -1.5182 8.3352
38 1 4.8048 -1.0901 7.9020
39 1 4.8087 -0.1527 12.5104
40 1 2.8614 -1.6978 3.4891
41 1 2.0501 1.0555 -2.4672
42 1 1.9918 -0.4665 -3.3879
43 1 0.5380 0.1197 -2.5443
44 1 4.0295 -0.3373 -2.0451
45 1 3.9567 -0.4358 -0.2576
46 1 4.6874 -2.5858 -1.9127
47 1 3.9901 -2.7846 -0.2713
48 1 2.5318 -2.7714 -2.9739
49 1 2.3598 -3.9394 -1.6260
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000340319109.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:21
Heat of formation + Delta-G solvation = -85.906780 kcal
Electronic energy + Delta-G solvation = -26682.415142 eV
Core-core repulsion = 22994.458746 eV
Total energy + Delta-G solvation = -3687.956396 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.40034 -40.79427 -38.95470 -36.53935 -35.37859 -33.61322 -33.02210 -32.89875
-31.11448 -30.02310 -29.11016 -27.33152 -26.94494 -24.40877 -23.78027 -22.93187
-22.47945 -21.71620 -20.72114 -19.48569 -18.65461 -17.98340 -17.02101 -16.98502
-16.95751 -16.67379 -16.46798 -16.01732 -15.82253 -15.24104 -14.90742 -14.70964
-14.66117 -14.44461 -14.34857 -14.24658 -14.05939 -13.50704 -13.35070 -13.27931
-13.02264 -12.75449 -12.69077 -12.63476 -12.45986 -12.27291 -12.24904 -11.98613
-11.93526 -11.73880 -11.63914 -11.53169 -11.48751 -11.40410 -10.84910 -10.81495
-10.59783 -9.22315 -8.35198 -8.32169 -6.41826 0.58124 0.70455 1.35311
1.36854 1.49912 2.15635 2.32903 2.67466 2.86313 2.98078 2.99506
3.52585 3.72673 3.89228 3.98533 4.04816 4.15798 4.23425 4.23810
4.27845 4.31240 4.35057 4.42617 4.45932 4.53844 4.65110 4.67998
4.69334 4.75609 4.81339 4.84378 4.89553 4.97302 5.01631 5.02756
5.09020 5.13073 5.21595 5.27236 5.29973 5.36237 5.45121 5.49859
5.53061 5.67047 5.75205 6.00390 6.16195 6.43966 6.59186 6.63555
6.80579 7.23161 8.80531
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.022397 B = 0.002298 C = 0.002151
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1249.860921 B =12182.476084 C =13016.640665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.158 3.842
3 H 0.098 0.902
4 N -0.728 5.728
5 C 0.258 3.742
6 C -0.236 4.236
7 C -0.032 4.032
8 C -0.284 4.284
9 C 0.155 3.845
10 O -0.338 6.338
11 C 0.089 3.911
12 C -0.006 4.006
13 C -0.536 4.536
14 H 0.042 0.958
15 C 0.013 3.987
16 N -0.942 5.942
17 Si 0.949 3.051
18 H -0.264 1.264
19 H -0.278 1.278
20 H -0.252 1.252
21 C -0.250 4.250
22 C 0.096 3.904
23 C -0.161 4.161
24 C -0.148 4.148
25 C -0.154 4.154
26 C 0.042 3.958
27 O -0.383 6.383
28 H 0.080 0.920
29 H 0.050 0.950
30 H 0.052 0.948
31 H 0.401 0.599
32 H 0.145 0.855
33 H 0.147 0.853
34 H 0.117 0.883
35 H 0.057 0.943
36 H 0.056 0.944
37 H 0.026 0.974
38 H 0.026 0.974
39 H 0.270 0.730
40 H 0.122 0.878
41 H 0.081 0.919
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.090 0.910
45 H 0.072 0.928
46 H 0.093 0.907
47 H 0.067 0.933
48 H 0.071 0.929
49 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.214 -1.897 -35.290 35.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.053 3.947
3 H 0.116 0.884
4 N -0.356 5.356
5 C 0.152 3.848
6 C -0.259 4.259
7 C -0.051 4.051
8 C -0.305 4.305
9 C 0.108 3.892
10 O -0.252 6.252
11 C 0.015 3.985
12 C -0.044 4.044
13 C -0.574 4.574
14 H 0.060 0.940
15 C -0.185 4.185
16 N -0.581 5.581
17 Si 0.772 3.228
18 H -0.189 1.189
19 H -0.203 1.203
20 H -0.176 1.176
21 C -0.274 4.274
22 C 0.056 3.944
23 C -0.219 4.219
24 C -0.185 4.185
25 C -0.191 4.191
26 C -0.035 4.035
27 O -0.302 6.302
28 H 0.099 0.901
29 H 0.069 0.931
30 H 0.071 0.929
31 H 0.236 0.764
32 H 0.162 0.838
33 H 0.164 0.836
34 H 0.135 0.865
35 H 0.075 0.925
36 H 0.074 0.926
37 H 0.045 0.955
38 H 0.045 0.955
39 H 0.079 0.921
40 H 0.140 0.860
41 H 0.100 0.900
42 H 0.086 0.914
43 H 0.086 0.914
44 H 0.109 0.891
45 H 0.091 0.909
46 H 0.111 0.889
47 H 0.086 0.914
48 H 0.089 0.911
49 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -5.392 -2.048 -35.173 35.643
hybrid contribution 0.529 -0.733 0.940 1.304
sum -4.863 -2.781 -34.233 34.689
Atomic orbital electron populations
1.22212 0.95266 1.02242 1.02395 1.21161 0.94355 0.96446 0.82709
0.88385 1.44680 1.72288 1.12400 1.06231 1.17420 0.90757 0.91324
0.85253 1.20747 1.12618 0.92925 0.99566 1.20940 0.93148 1.00093
0.90891 1.21202 1.13632 0.94262 1.01390 1.19068 0.92112 0.91559
0.86435 1.86002 1.80440 1.40712 1.17999 1.22636 1.00238 0.94141
0.81525 1.19448 0.96984 0.96127 0.91795 1.21105 1.45057 0.97259
0.93989 0.93981 1.25882 0.94593 1.03295 0.94724 1.70024 1.47848
1.38789 1.01478 0.85673 0.79683 0.79372 0.78069 1.18880 1.20347
1.17573 1.19734 1.16214 1.00705 0.90753 1.22413 0.92982 0.84222
0.94763 1.22260 1.02855 1.00727 0.96027 1.23027 0.94461 0.97321
1.03723 1.23119 0.98918 0.95028 1.02081 1.23709 0.86266 0.95653
0.97837 1.88960 1.39986 1.18643 1.82640 0.90116 0.93088 0.92912
0.76387 0.83750 0.83556 0.86472 0.92456 0.92596 0.95540 0.95541
0.92077 0.85985 0.90007 0.91386 0.91367 0.89130 0.90931 0.88855
0.91376 0.91082 0.88585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.42 9.00 71.98 0.65 -1.77 16
2 C 0.16 2.26 1.56 44.99 0.07 2.33 16
3 H 0.10 1.23 6.48 -2.39 -0.02 1.21 16
4 N -0.73 -13.72 4.28 -319.00 -1.36 -15.08 16
5 C 0.26 6.29 6.63 38.20 0.25 6.55 16
6 C -0.24 -5.31 8.85 22.42 0.20 -5.11 16
7 C -0.03 -0.81 10.03 22.23 0.22 -0.58 16
8 C -0.28 -9.17 9.04 22.39 0.20 -8.97 16
9 C 0.15 5.52 6.68 22.49 0.15 5.67 16
10 O -0.34 -14.01 10.13 -92.46 -0.94 -14.94 16
11 C 0.09 3.89 4.68 71.98 0.34 4.23 16
12 C -0.01 -0.30 4.41 29.85 0.13 -0.17 16
13 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16
14 H 0.04 2.66 7.99 -2.91 -0.02 2.63 16
15 C 0.01 0.78 5.47 84.65 0.46 1.24 16
16 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16
17 Si 0.95 44.97 27.47 68.60 1.88 46.85 16
18 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16
19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
20 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16
21 C -0.25 -7.65 9.83 22.49 0.22 -7.43 16
22 C 0.10 1.15 0.54 -10.42 -0.01 1.15 16
23 C -0.16 -1.36 8.35 71.98 0.60 -0.76 16
24 C -0.15 -1.63 5.92 31.58 0.19 -1.44 16
25 C -0.15 -1.58 7.16 31.89 0.23 -1.35 16
26 C 0.04 0.44 7.67 72.66 0.56 1.00 16
27 O -0.38 -5.84 9.77 -148.98 -1.46 -7.30 16
28 H 0.08 0.89 6.58 -2.39 -0.02 0.88 16
29 H 0.05 0.93 7.62 -2.38 -0.02 0.91 16
30 H 0.05 0.88 7.71 -2.39 -0.02 0.86 16
31 H 0.40 7.65 8.27 -92.70 -0.77 6.88 16
32 H 0.14 2.41 6.11 -2.91 -0.02 2.39 16
33 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16
34 H 0.12 3.91 6.29 -2.91 -0.02 3.89 16
35 H 0.06 2.44 7.66 -2.39 -0.02 2.43 16
36 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16
37 H 0.03 1.31 7.20 -2.39 -0.02 1.30 16
38 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16
39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16
40 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16
41 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16
42 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16
43 H 0.07 0.61 6.58 -2.39 -0.02 0.59 16
44 H 0.09 0.75 7.70 -2.38 -0.02 0.73 16
45 H 0.07 1.03 7.15 -2.38 -0.02 1.01 16
46 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
47 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16
48 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16
49 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16
Total: -1.00 -68.43 383.68 3.25 -65.17
By element:
Atomic # 1 Polarization: 20.40 SS G_CDS: 0.11 Total: 20.51 kcal
Atomic # 6 Polarization: -41.33 SS G_CDS: 4.71 Total: -36.62 kcal
Atomic # 7 Polarization: -72.61 SS G_CDS: -1.07 Total: -73.67 kcal
Atomic # 8 Polarization: -19.85 SS G_CDS: -2.39 Total: -22.24 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal
Total: -68.43 3.25 -65.17 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340319109.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.732 kcal
(2) G-P(sol) polarization free energy of solvation -68.428 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds