Wall clock time and date at job start Tue Mar 31 2020 12:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47201 * 2 1 4 4 N 1.46494 * 109.47072 * 239.99868 * 2 1 3 5 5 C 1.39663 * 120.00114 * 85.00248 * 4 2 1 6 6 C 1.38971 * 120.04575 * 359.71970 * 5 4 2 7 7 C 1.38113 * 120.03361 * 179.76352 * 6 5 4 8 8 C 1.38214 * 120.13277 * 0.51685 * 7 6 5 9 9 C 1.38774 * 120.08682 * 359.74000 * 8 7 6 10 10 O 1.35905 * 120.01563 * 179.97438 * 9 8 7 11 11 C 1.42902 * 117.00041 * 0.02562 * 10 9 8 12 12 C 1.52997 * 109.47122 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47112 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99993 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00098 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00109 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00241 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47018 * 90.00440 * 17 15 13 19 19 H 1.48500 * 109.47121 * 210.00199 * 17 15 13 20 20 H 1.48497 * 109.46958 * 330.00547 * 17 15 13 21 21 C 1.38609 * 119.96621 * 0.02562 * 9 8 7 22 22 C 1.53008 * 109.46824 * 119.99732 * 2 1 3 23 23 C 1.52997 * 109.82470 * 300.70233 * 22 2 1 24 24 C 1.54376 * 109.82787 * 179.81100 * 22 2 1 25 25 C 1.55301 * 102.25413 * 219.03871 * 24 22 2 26 26 C 1.54948 * 100.94037 * 34.14019 * 25 24 22 27 27 O 1.43240 * 109.90159 * 61.63828 * 22 2 1 28 28 H 1.09003 * 109.46531 * 60.00081 * 1 2 3 29 29 H 1.08996 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46959 * 300.00361 * 1 2 3 31 31 H 0.97003 * 119.99817 * 264.99632 * 4 2 1 32 32 H 1.07996 * 119.98177 * 0.02565 * 6 5 4 33 33 H 1.08001 * 119.93375 * 180.23267 * 7 6 5 34 34 H 1.08002 * 119.95674 * 179.71620 * 8 7 6 35 35 H 1.08997 * 109.47349 * 300.00755 * 11 10 9 36 36 H 1.08999 * 109.46542 * 60.00387 * 11 10 9 37 37 H 1.08997 * 109.47672 * 300.00615 * 12 11 10 38 38 H 1.09010 * 109.46621 * 60.00680 * 12 11 10 39 39 H 0.97000 * 119.99710 * 179.97438 * 16 15 13 40 40 H 1.08007 * 120.06373 * 180.02562 * 21 9 8 41 41 H 1.09002 * 109.47153 * 299.81293 * 23 22 2 42 42 H 1.09001 * 109.46832 * 179.81484 * 23 22 2 43 43 H 1.09004 * 109.47261 * 59.81465 * 23 22 2 44 44 H 1.09003 * 110.85125 * 337.23223 * 24 22 2 45 45 H 1.09003 * 110.84712 * 100.85616 * 24 22 2 46 46 H 1.09003 * 111.12719 * 152.05158 * 25 24 22 47 47 H 1.08996 * 111.12819 * 276.22029 * 25 24 22 48 48 H 1.08991 * 110.31310 * 82.46860 * 26 25 24 49 49 H 1.09007 * 110.30614 * 204.63940 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1518 0.0061 -2.3992 6 6 1.8161 1.3531 -2.4641 7 6 1.9528 2.0430 -3.6528 8 6 2.4133 1.3939 -4.7828 9 6 2.7450 0.0476 -4.7252 10 8 3.1971 -0.5893 -5.8374 11 6 3.3067 0.1885 -7.0311 12 6 3.8287 -0.6925 -8.1678 13 6 3.9437 0.1276 -9.4268 14 1 3.6721 1.1729 -9.4171 15 6 4.3966 -0.4561 -10.5908 16 7 4.7279 -1.7288 -10.6026 17 14 4.5399 0.5607 -12.1513 18 1 5.8927 1.1691 -12.2233 19 1 4.3267 -0.3132 -13.3329 20 1 3.5143 1.6346 -12.1383 21 6 2.6139 -0.6473 -3.5331 22 6 2.0400 -0.7212 1.2494 23 6 1.5201 -0.0165 2.5039 24 6 3.5837 -0.7302 1.2554 25 6 3.9030 -2.1487 1.8012 26 6 2.7325 -2.9659 1.1987 27 8 1.5993 -2.0841 1.2396 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2491 -1.6318 -1.1525 32 1 1.4522 1.8616 -1.5837 33 1 1.6950 3.0907 -3.7005 34 1 2.5147 1.9351 -5.7119 35 1 2.3269 0.5843 -7.2982 36 1 3.9989 1.0139 -6.8645 37 1 4.8086 -1.0879 -7.9005 38 1 3.1368 -1.5182 -8.3345 39 1 5.0462 -2.1395 -11.4217 40 1 2.8720 -1.6951 -3.4864 41 1 1.8759 1.0138 2.5157 42 1 1.8839 -0.5367 3.3900 43 1 0.4301 -0.0245 2.4998 44 1 3.9764 -0.6054 0.2462 45 1 3.9736 0.0387 1.9224 46 1 4.8635 -2.5057 1.4295 47 1 3.8744 -2.1661 2.8906 48 1 2.9569 -3.2460 0.1696 49 1 2.5423 -3.8546 1.8007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340319114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:28 Heat of formation + Delta-G solvation = -71.535933 kcal Electronic energy + Delta-G solvation = -26645.248978 eV Core-core repulsion = 22957.915748 eV Total energy + Delta-G solvation = -3687.333229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.70354 -39.57262 -37.67881 -35.52884 -33.35113 -32.97563 -32.44048 -30.81523 -29.86709 -28.83724 -28.15880 -26.48260 -24.99018 -23.75621 -22.58782 -22.06157 -21.59903 -20.31295 -19.96219 -18.03856 -17.14654 -16.52248 -16.28587 -15.89761 -15.56108 -15.30550 -15.22188 -14.94398 -14.45472 -14.35331 -14.14029 -13.82759 -13.42990 -13.32498 -13.05721 -12.78833 -12.71166 -12.53069 -12.28885 -12.26223 -12.08975 -11.88047 -11.56872 -11.49607 -11.34809 -11.11917 -11.03373 -10.93928 -10.85768 -10.72556 -10.41201 -9.99415 -9.86893 -9.66517 -9.61288 -9.26458 -8.42550 -7.91148 -7.27562 -6.07774 -4.12095 1.75499 1.91227 3.22402 3.29191 3.34918 3.35433 3.38456 4.02663 4.07297 4.16475 4.26271 4.40456 4.44890 4.61305 4.70025 4.84309 4.99578 5.11068 5.13891 5.17230 5.28593 5.31769 5.33396 5.38821 5.40701 5.42306 5.51809 5.54722 5.58741 5.61907 5.70063 5.70887 5.81558 5.87888 6.11222 6.12503 6.12990 6.16880 6.45651 6.65633 6.68040 6.71260 6.80721 6.93312 7.43850 7.55360 7.68226 7.72736 7.86758 8.15255 8.27876 8.93626 9.51994 11.03863 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025818 B = 0.002155 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.259833 B =12989.185109 C =13641.635621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.739 5.739 5 C 0.250 3.750 6 C -0.246 4.246 7 C -0.037 4.037 8 C -0.265 4.265 9 C 0.188 3.812 10 O -0.317 6.317 11 C 0.067 3.933 12 C 0.025 3.975 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.239 4.239 22 C 0.099 3.901 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.156 4.156 26 C 0.047 3.953 27 O -0.367 6.367 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.397 0.603 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 3.184 29.042 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.147 3.853 6 C -0.268 4.268 7 C -0.055 4.055 8 C -0.286 4.286 9 C 0.140 3.860 10 O -0.229 6.229 11 C -0.007 4.007 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.263 4.263 22 C 0.060 3.940 23 C -0.210 4.210 24 C -0.187 4.187 25 C -0.193 4.193 26 C -0.029 4.029 27 O -0.286 6.286 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.465 2.895 29.023 29.674 hybrid contribution 0.399 0.352 -1.006 1.138 sum -5.066 3.246 28.016 28.655 Atomic orbital electron populations 1.22271 0.95401 1.03037 1.01881 1.21146 0.94455 0.96218 0.83708 0.89615 1.44574 1.73465 1.12226 1.06618 1.17355 0.91909 0.90958 0.85088 1.20399 1.14155 0.93299 0.98974 1.20610 0.94554 0.98695 0.91678 1.21135 1.12334 0.94686 1.00437 1.18816 0.89736 0.90498 0.86918 1.86147 1.78888 1.40345 1.17569 1.23304 0.99898 0.95461 0.82075 1.19127 0.97289 0.95251 0.89571 1.20979 1.44973 0.96442 0.93915 0.92351 1.24995 0.95137 0.95019 0.99102 1.69982 1.43908 1.10923 1.28023 0.86487 0.78515 0.79959 0.82423 1.20513 1.21074 1.19754 1.19650 1.15370 1.00628 0.90623 1.22359 0.93566 0.83507 0.94614 1.22097 1.02524 1.00086 0.96319 1.23236 0.94465 0.97810 1.03217 1.23245 0.99558 0.95177 1.01348 1.23420 0.85438 0.93622 1.00425 1.88467 1.30384 1.14743 1.95052 0.92091 0.91632 0.91952 0.76728 0.86659 0.86439 0.85647 0.93103 0.93127 0.95459 0.95441 0.92745 0.85946 0.91292 0.91842 0.91204 0.89487 0.89914 0.89812 0.90480 0.92117 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.93 37.16 0.33 -1.15 16 2 C 0.15 1.32 1.63 -67.93 -0.11 1.21 16 3 H 0.09 0.72 6.49 -51.93 -0.34 0.38 16 4 N -0.74 -7.92 4.29 -52.18 -0.22 -8.15 16 5 C 0.25 3.37 6.63 -83.81 -0.56 2.81 16 6 C -0.25 -3.17 8.83 -39.36 -0.35 -3.52 16 7 C -0.04 -0.50 10.03 -39.64 -0.40 -0.90 16 8 C -0.27 -4.39 9.04 -39.39 -0.36 -4.75 16 9 C 0.19 3.46 6.68 -39.25 -0.26 3.20 16 10 O -0.32 -6.79 10.13 -19.44 -0.20 -6.99 16 11 C 0.07 1.48 4.68 37.16 0.17 1.65 16 12 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 13 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.24 -3.84 9.83 -39.24 -0.39 -4.23 16 22 C 0.10 0.75 0.64 -89.90 -0.06 0.69 16 23 C -0.15 -0.93 8.36 37.16 0.31 -0.62 16 24 C -0.15 -1.03 5.97 -24.79 -0.15 -1.18 16 25 C -0.16 -0.94 7.16 -24.48 -0.18 -1.11 16 26 C 0.05 0.34 7.40 38.19 0.28 0.62 16 27 O -0.37 -3.31 9.64 -35.23 -0.34 -3.65 16 28 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 30 H 0.06 0.44 6.44 -51.93 -0.33 0.11 16 31 H 0.40 4.17 7.22 -40.82 -0.29 3.88 16 32 H 0.12 1.23 6.08 -52.49 -0.32 0.91 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 35 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 36 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 44 H 0.09 0.72 7.17 -51.93 -0.37 0.35 16 45 H 0.08 0.48 7.82 -51.93 -0.41 0.07 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.44 7.54 -51.93 -0.39 0.04 16 49 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -31.08 385.32 -9.56 -40.64 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.06 Total: 2.22 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.26 Total: -20.31 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.51 Total: -34.17 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.54 Total: -10.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.08 -9.56 -40.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340319114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.894 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds