Wall clock time and date at job start Tue Mar 31 2020 12:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47466 * 2 1
4 4 N 1.46509 * 109.47233 * 240.00257 * 2 1 3
5 5 C 1.39659 * 119.99792 * 84.99695 * 4 2 1
6 6 C 1.38972 * 120.04912 * 0.02562 * 5 4 2
7 7 C 1.38120 * 120.03773 * 179.97438 * 6 5 4
8 8 C 1.38217 * 120.12663 * 0.28148 * 7 6 5
9 9 C 1.38775 * 120.09286 * 359.43840 * 8 7 6
10 10 O 1.35890 * 120.01981 * 180.25174 * 9 8 7
11 11 C 1.42899 * 116.99896 * 0.30766 * 10 9 8
12 12 C 1.53002 * 109.47265 * 179.97438 * 11 10 9
13 13 C 1.50696 * 109.47291 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00322 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99863 * 179.97438 * 13 12 11
16 16 N 1.31509 * 120.00077 * 359.97438 * 15 13 12
17 17 Si 1.86802 * 119.99774 * 179.97438 * 15 13 12
18 18 H 1.48505 * 109.46871 * 90.00256 * 17 15 13
19 19 H 1.48497 * 109.47205 * 210.00166 * 17 15 13
20 20 H 1.48503 * 109.47409 * 330.00174 * 17 15 13
21 21 C 1.38614 * 119.95978 * 0.56135 * 9 8 7
22 22 C 1.53001 * 109.46980 * 120.00689 * 2 1 3
23 23 C 1.53169 * 109.54737 * 59.82030 * 22 2 1
24 24 C 1.53101 * 109.15976 * 183.23975 * 23 22 2
25 25 O 1.42907 * 109.48428 * 57.47499 * 24 23 22
26 26 C 1.42900 * 114.09761 * 298.89155 * 25 24 23
27 27 C 1.53087 * 109.41614 * 61.15687 * 26 25 24
28 28 H 1.09002 * 109.46820 * 59.99932 * 1 2 3
29 29 H 1.09002 * 109.46637 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47178 * 299.99410 * 1 2 3
31 31 H 0.96999 * 119.99745 * 265.00352 * 4 2 1
32 32 H 1.07998 * 119.98425 * 359.95131 * 6 5 4
33 33 H 1.08002 * 119.93398 * 179.97438 * 7 6 5
34 34 H 1.07996 * 119.95468 * 179.70439 * 8 7 6
35 35 H 1.08998 * 109.47113 * 299.99748 * 11 10 9
36 36 H 1.08999 * 109.47280 * 59.99402 * 11 10 9
37 37 H 1.09006 * 109.46966 * 299.99791 * 12 11 10
38 38 H 1.08999 * 109.47197 * 59.99672 * 12 11 10
39 39 H 0.97005 * 120.00135 * 180.02562 * 16 15 13
40 40 H 1.08003 * 120.06243 * 179.74355 * 21 9 8
41 41 H 1.09001 * 109.54098 * 179.97438 * 22 2 1
42 42 H 1.09000 * 109.52333 * 303.06329 * 23 22 2
43 43 H 1.09006 * 109.52244 * 63.24718 * 23 22 2
44 44 H 1.09001 * 109.40939 * 297.49488 * 24 23 22
45 45 H 1.08999 * 109.49625 * 177.50666 * 24 23 22
46 46 H 1.09007 * 109.47774 * 301.16955 * 26 25 24
47 47 H 1.08998 * 109.48115 * 181.14363 * 26 25 24
48 48 H 1.09002 * 109.52204 * 182.48887 * 27 26 25
49 49 H 1.08994 * 109.57395 * 62.33188 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6906 -1.1963
5 6 2.1517 0.0062 -2.3993
6 6 1.8219 1.3547 -2.4626
7 6 1.9544 2.0437 -3.6523
8 6 2.4094 1.3932 -4.7838
9 6 2.7458 0.0481 -4.7252
10 8 3.1978 -0.5887 -5.8373
11 6 3.3083 0.1895 -7.0307
12 6 3.8300 -0.6915 -8.1676
13 6 3.9472 0.1293 -9.4260
14 1 3.6762 1.1747 -9.4160
15 6 4.4004 -0.4543 -10.5900
16 7 4.7308 -1.7272 -10.6020
17 14 4.5449 0.5630 -12.1501
18 1 5.8980 1.1706 -12.2211
19 1 4.3317 -0.3103 -13.3320
20 1 3.5198 1.6374 -12.1372
21 6 2.6143 -0.6470 -3.5332
22 6 2.0400 -0.7214 1.2492
23 6 1.5267 -2.1645 1.2530
24 6 1.9742 -2.8536 2.5449
25 8 1.4894 -2.1179 3.6701
26 6 1.9759 -0.7763 3.7436
27 6 1.5267 -0.0033 2.5010
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 2.2491 -1.6318 -1.1527
32 1 1.4615 1.8642 -1.5812
33 1 1.6972 3.0916 -3.6997
34 1 2.5073 1.9335 -5.7137
35 1 2.3288 0.5859 -7.2980
36 1 4.0008 1.0145 -6.8637
37 1 4.8098 -1.0875 -7.9000
38 1 3.1379 -1.5167 -8.3347
39 1 5.0500 -2.1377 -11.4209
40 1 2.8717 -1.6949 -3.4867
41 1 3.1300 -0.7225 1.2501
42 1 0.4380 -2.1640 1.2001
43 1 1.9337 -2.6982 0.3941
44 1 3.0631 -2.8911 2.5770
45 1 1.5745 -3.8672 2.5738
46 1 3.0649 -0.7867 3.7914
47 1 1.5775 -0.2936 4.6359
48 1 1.9338 1.0074 2.5338
49 1 0.4381 0.0433 2.4737
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000346551481.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:31
Heat of formation + Delta-G solvation = -77.907786 kcal
Electronic energy + Delta-G solvation = -26106.348393 eV
Core-core repulsion = 22418.738859 eV
Total energy + Delta-G solvation = -3687.609534 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-40.38051 -39.59155 -37.99186 -36.34363 -33.63210 -33.27361 -31.59051 -31.00218
-30.33298 -28.97641 -28.14993 -25.78729 -24.96645 -24.10060 -22.90569 -22.44293
-21.35786 -20.33243 -19.57602 -18.03921 -16.94948 -16.56885 -16.30498 -15.99288
-15.76360 -15.44966 -15.24384 -15.21546 -14.89920 -14.78699 -14.38648 -14.11139
-13.88274 -13.37754 -12.96589 -12.83271 -12.73739 -12.65604 -12.35444 -12.29953
-11.94553 -11.61984 -11.53617 -11.43606 -11.27858 -11.23928 -10.92231 -10.86035
-10.73620 -10.56634 -10.42268 -10.04660 -9.91781 -9.69834 -9.62450 -9.27508
-8.43506 -7.93818 -7.31716 -6.08653 -4.13007 1.72898 1.88580 3.17909
3.28538 3.34511 3.37634 3.45170 4.01141 4.11409 4.19878 4.22815
4.32616 4.43893 4.55193 4.75168 4.82883 4.90077 4.95527 5.05921
5.10728 5.17419 5.23207 5.27729 5.31767 5.35209 5.41102 5.43877
5.53449 5.56205 5.59968 5.64619 5.70900 5.75812 5.82635 6.07324
6.09745 6.11142 6.13823 6.42641 6.64094 6.68415 6.75227 6.77565
6.90708 7.40156 7.53834 7.67036 7.67710 7.85435 8.13465 8.26761
8.92650 9.51088 11.02940
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.032763 B = 0.001885 C = 0.001811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 854.423052 B =14852.348680 C =15455.052729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.158 3.842
3 H 0.080 0.920
4 N -0.744 5.744
5 C 0.249 3.751
6 C -0.245 4.245
7 C -0.037 4.037
8 C -0.265 4.265
9 C 0.188 3.812
10 O -0.317 6.317
11 C 0.066 3.934
12 C 0.025 3.975
13 C -0.525 4.525
14 H 0.058 0.942
15 C 0.060 3.940
16 N -0.890 5.890
17 Si 0.899 3.101
18 H -0.279 1.279
19 H -0.285 1.285
20 H -0.273 1.273
21 C -0.239 4.239
22 C -0.096 4.096
23 C -0.155 4.155
24 C 0.060 3.940
25 O -0.384 6.384
26 C 0.061 3.939
27 C -0.151 4.151
28 H 0.061 0.939
29 H 0.060 0.940
30 H 0.063 0.937
31 H 0.396 0.604
32 H 0.116 0.884
33 H 0.118 0.882
34 H 0.126 0.874
35 H 0.051 0.949
36 H 0.051 0.949
37 H 0.027 0.973
38 H 0.027 0.973
39 H 0.263 0.737
40 H 0.123 0.877
41 H 0.077 0.923
42 H 0.079 0.921
43 H 0.073 0.927
44 H 0.050 0.950
45 H 0.094 0.906
46 H 0.050 0.950
47 H 0.094 0.906
48 H 0.076 0.924
49 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.382 3.165 29.175 30.260
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.052 3.948
3 H 0.098 0.902
4 N -0.375 5.375
5 C 0.146 3.854
6 C -0.268 4.268
7 C -0.056 4.056
8 C -0.285 4.285
9 C 0.140 3.860
10 O -0.229 6.229
11 C -0.008 4.008
12 C -0.012 4.012
13 C -0.564 4.564
14 H 0.077 0.923
15 C -0.142 4.142
16 N -0.528 5.528
17 Si 0.726 3.274
18 H -0.205 1.205
19 H -0.211 1.211
20 H -0.198 1.198
21 C -0.262 4.262
22 C -0.115 4.115
23 C -0.193 4.193
24 C -0.016 4.016
25 O -0.302 6.302
26 C -0.016 4.016
27 C -0.189 4.189
28 H 0.080 0.920
29 H 0.079 0.921
30 H 0.082 0.918
31 H 0.232 0.768
32 H 0.133 0.867
33 H 0.136 0.864
34 H 0.144 0.856
35 H 0.069 0.931
36 H 0.069 0.931
37 H 0.046 0.954
38 H 0.046 0.954
39 H 0.073 0.927
40 H 0.141 0.859
41 H 0.096 0.904
42 H 0.098 0.902
43 H 0.092 0.908
44 H 0.068 0.932
45 H 0.112 0.888
46 H 0.068 0.932
47 H 0.112 0.888
48 H 0.094 0.906
49 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -7.442 2.860 29.281 30.347
hybrid contribution 0.375 0.491 -1.287 1.428
sum -7.067 3.351 27.993 29.066
Atomic orbital electron populations
1.22417 0.95950 1.02617 1.02212 1.20802 0.93708 0.96569 0.83689
0.90199 1.44691 1.73800 1.12170 1.06803 1.17343 0.91951 0.90968
0.85122 1.20410 1.14189 0.93244 0.98930 1.20621 0.94592 0.98711
0.91672 1.21144 1.12237 0.94733 1.00414 1.18822 0.89721 0.90513
0.86950 1.86144 1.78875 1.40321 1.17577 1.23311 0.99904 0.95471
0.82075 1.19129 0.97301 0.95245 0.89567 1.20981 1.45026 0.96418
0.93942 0.92346 1.24995 0.95131 0.95018 0.99102 1.69977 1.43857
1.10920 1.28043 0.86486 0.78516 0.79957 0.82411 1.20516 1.21068
1.19760 1.19662 1.15251 1.00666 0.90664 1.21442 1.00747 0.95141
0.94195 1.22322 1.02725 0.95743 0.98465 1.22584 0.98331 0.95460
0.85261 1.87943 1.71733 1.24530 1.46021 1.22573 0.98313 0.82736
0.97994 1.22287 1.02644 0.99629 0.94380 0.91959 0.92055 0.91790
0.76815 0.86654 0.86430 0.85626 0.93098 0.93108 0.95447 0.95435
0.92739 0.85887 0.90433 0.90211 0.90814 0.93190 0.88785 0.93199
0.88797 0.90561 0.90221
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.29 8.73 37.16 0.32 -0.96 16
2 C 0.16 1.20 2.10 -67.92 -0.14 1.06 16
3 H 0.08 0.64 6.48 -51.93 -0.34 0.30 16
4 N -0.74 -7.24 5.17 -52.18 -0.27 -7.51 16
5 C 0.25 3.25 6.63 -83.81 -0.56 2.70 16
6 C -0.25 -3.11 8.85 -39.35 -0.35 -3.46 16
7 C -0.04 -0.51 10.03 -39.63 -0.40 -0.91 16
8 C -0.26 -4.34 9.04 -39.39 -0.36 -4.70 16
9 C 0.19 3.41 6.68 -39.24 -0.26 3.15 16
10 O -0.32 -6.73 10.13 -19.40 -0.20 -6.93 16
11 C 0.07 1.46 4.68 37.16 0.17 1.64 16
12 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16
13 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16
14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16
15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
16 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16
17 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16
18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
21 C -0.24 -3.76 9.83 -39.24 -0.39 -4.14 16
22 C -0.10 -0.60 2.26 -90.44 -0.20 -0.80 16
23 C -0.15 -0.95 4.92 -26.59 -0.13 -1.09 16
24 C 0.06 0.39 6.84 37.21 0.25 0.64 16
25 O -0.38 -3.10 10.77 -35.23 -0.38 -3.48 16
26 C 0.06 0.35 6.84 37.20 0.25 0.61 16
27 C -0.15 -0.82 5.15 -26.60 -0.14 -0.95 16
28 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16
29 H 0.06 0.47 6.37 -51.93 -0.33 0.14 16
30 H 0.06 0.39 6.36 -51.93 -0.33 0.06 16
31 H 0.40 3.48 6.95 -40.82 -0.28 3.20 16
32 H 0.12 1.21 6.11 -52.49 -0.32 0.89 16
33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
34 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16
35 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16
36 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16
37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
40 H 0.12 1.84 8.06 -52.48 -0.42 1.41 16
41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
42 H 0.08 0.54 6.28 -51.93 -0.33 0.21 16
43 H 0.07 0.43 6.64 -51.93 -0.34 0.08 16
44 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16
45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
46 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16
47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16
48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
49 H 0.08 0.45 6.28 -51.93 -0.33 0.12 16
LS Contribution 380.80 15.07 5.74 5.74
Total: -1.00 -31.31 380.80 -9.76 -41.07
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -7.89 Total: 0.87 kcal
Atomic # 6 Polarization: -17.75 SS G_CDS: -2.47 Total: -20.23 kcal
Atomic # 7 Polarization: -33.90 SS G_CDS: 0.47 Total: -33.44 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: -0.58 Total: -10.41 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -31.31 -9.76 -41.07 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000346551481.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.843 kcal
(2) G-P(sol) polarization free energy of solvation -31.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.149 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds