Wall clock time and date at job start Tue Mar 31 2020 12:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47466 * 2 1
4 4 N 1.46509 * 109.47233 * 240.00257 * 2 1 3
5 5 C 1.39659 * 119.99792 * 84.99695 * 4 2 1
6 6 C 1.38972 * 120.04912 * 0.02562 * 5 4 2
7 7 C 1.38120 * 120.03773 * 179.97438 * 6 5 4
8 8 C 1.38217 * 120.12663 * 0.28148 * 7 6 5
9 9 C 1.38775 * 120.09286 * 359.43840 * 8 7 6
10 10 O 1.35890 * 120.01981 * 180.25174 * 9 8 7
11 11 C 1.42899 * 116.99896 * 0.30766 * 10 9 8
12 12 C 1.53002 * 109.47265 * 179.97438 * 11 10 9
13 13 C 1.50696 * 109.47291 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00322 * 359.97438 * 13 12 11
15 15 C 1.37880 * 119.99863 * 179.97438 * 13 12 11
16 16 N 1.31509 * 120.00077 * 359.97438 * 15 13 12
17 17 Si 1.86802 * 119.99774 * 179.97438 * 15 13 12
18 18 H 1.48505 * 109.46871 * 90.00256 * 17 15 13
19 19 H 1.48497 * 109.47205 * 210.00166 * 17 15 13
20 20 H 1.48503 * 109.47409 * 330.00174 * 17 15 13
21 21 C 1.38614 * 119.95978 * 0.56135 * 9 8 7
22 22 C 1.53001 * 109.46980 * 120.00689 * 2 1 3
23 23 C 1.53169 * 109.54737 * 59.82030 * 22 2 1
24 24 C 1.53101 * 109.15976 * 183.23975 * 23 22 2
25 25 O 1.42907 * 109.48428 * 57.47499 * 24 23 22
26 26 C 1.42900 * 114.09761 * 298.89155 * 25 24 23
27 27 C 1.53087 * 109.41614 * 61.15687 * 26 25 24
28 28 H 1.09002 * 109.46820 * 59.99932 * 1 2 3
29 29 H 1.09002 * 109.46637 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47178 * 299.99410 * 1 2 3
31 31 H 0.96999 * 119.99745 * 265.00352 * 4 2 1
32 32 H 1.07998 * 119.98425 * 359.95131 * 6 5 4
33 33 H 1.08002 * 119.93398 * 179.97438 * 7 6 5
34 34 H 1.07996 * 119.95468 * 179.70439 * 8 7 6
35 35 H 1.08998 * 109.47113 * 299.99748 * 11 10 9
36 36 H 1.08999 * 109.47280 * 59.99402 * 11 10 9
37 37 H 1.09006 * 109.46966 * 299.99791 * 12 11 10
38 38 H 1.08999 * 109.47197 * 59.99672 * 12 11 10
39 39 H 0.97005 * 120.00135 * 180.02562 * 16 15 13
40 40 H 1.08003 * 120.06243 * 179.74355 * 21 9 8
41 41 H 1.09001 * 109.54098 * 179.97438 * 22 2 1
42 42 H 1.09000 * 109.52333 * 303.06329 * 23 22 2
43 43 H 1.09006 * 109.52244 * 63.24718 * 23 22 2
44 44 H 1.09001 * 109.40939 * 297.49488 * 24 23 22
45 45 H 1.08999 * 109.49625 * 177.50666 * 24 23 22
46 46 H 1.09007 * 109.47774 * 301.16955 * 26 25 24
47 47 H 1.08998 * 109.48115 * 181.14363 * 26 25 24
48 48 H 1.09002 * 109.52204 * 182.48887 * 27 26 25
49 49 H 1.08994 * 109.57395 * 62.33188 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6906 -1.1963
5 6 2.1517 0.0062 -2.3993
6 6 1.8219 1.3547 -2.4626
7 6 1.9544 2.0437 -3.6523
8 6 2.4094 1.3932 -4.7838
9 6 2.7458 0.0481 -4.7252
10 8 3.1978 -0.5887 -5.8373
11 6 3.3083 0.1895 -7.0307
12 6 3.8300 -0.6915 -8.1676
13 6 3.9472 0.1293 -9.4260
14 1 3.6762 1.1747 -9.4160
15 6 4.4004 -0.4543 -10.5900
16 7 4.7308 -1.7272 -10.6020
17 14 4.5449 0.5630 -12.1501
18 1 5.8980 1.1706 -12.2211
19 1 4.3317 -0.3103 -13.3320
20 1 3.5198 1.6374 -12.1372
21 6 2.6143 -0.6470 -3.5332
22 6 2.0400 -0.7214 1.2492
23 6 1.5267 -2.1645 1.2530
24 6 1.9742 -2.8536 2.5449
25 8 1.4894 -2.1179 3.6701
26 6 1.9759 -0.7763 3.7436
27 6 1.5267 -0.0033 2.5010
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8900
31 1 2.2491 -1.6318 -1.1527
32 1 1.4615 1.8642 -1.5812
33 1 1.6972 3.0916 -3.6997
34 1 2.5073 1.9335 -5.7137
35 1 2.3288 0.5859 -7.2980
36 1 4.0008 1.0145 -6.8637
37 1 4.8098 -1.0875 -7.9000
38 1 3.1379 -1.5167 -8.3347
39 1 5.0500 -2.1377 -11.4209
40 1 2.8717 -1.6949 -3.4867
41 1 3.1300 -0.7225 1.2501
42 1 0.4380 -2.1640 1.2001
43 1 1.9337 -2.6982 0.3941
44 1 3.0631 -2.8911 2.5770
45 1 1.5745 -3.8672 2.5738
46 1 3.0649 -0.7867 3.7914
47 1 1.5775 -0.2936 4.6359
48 1 1.9338 1.0074 2.5338
49 1 0.4381 0.0433 2.4737
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000346551481.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:30
Heat of formation + Delta-G solvation = -96.014022 kcal
Electronic energy + Delta-G solvation = -26107.133538 eV
Core-core repulsion = 22418.738859 eV
Total energy + Delta-G solvation = -3688.394679 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.20348 -40.60526 -39.08960 -37.27458 -35.47158 -34.36047 -32.57930 -32.05029
-31.47111 -30.24119 -29.11478 -26.98555 -26.29962 -24.61980 -23.85825 -23.76976
-22.60341 -21.65734 -20.19991 -19.33793 -18.36568 -17.63581 -17.09928 -16.94929
-16.90714 -16.75175 -16.51192 -16.47046 -15.78317 -15.64251 -15.59165 -14.77986
-14.59246 -14.45638 -14.32330 -14.19923 -14.07558 -13.56215 -13.29006 -13.19597
-13.11115 -12.99360 -12.72740 -12.53638 -12.40161 -12.32583 -12.00148 -11.92707
-11.89740 -11.63515 -11.56173 -11.42913 -11.37947 -11.07357 -10.83766 -10.62037
-10.45181 -9.21798 -8.33033 -8.26604 -6.40315 0.57982 0.70648 1.40833
1.43363 1.54560 2.16385 2.39770 2.73589 2.96984 2.99960 3.07605
3.64447 3.70645 3.83531 4.00442 4.09404 4.24274 4.25960 4.28782
4.29998 4.31168 4.35087 4.40393 4.44974 4.50263 4.63741 4.67717
4.69181 4.74889 4.80733 4.83656 4.88004 4.93978 4.96180 5.06112
5.15156 5.19510 5.25179 5.31288 5.35493 5.47001 5.51321 5.54520
5.65560 5.67763 5.77917 6.07347 6.28675 6.44128 6.62616 6.74378
6.81365 7.29651 8.86554
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.032763 B = 0.001885 C = 0.001811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 854.423052 B =14852.348680 C =15455.052729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.157 3.843
3 H 0.086 0.914
4 N -0.735 5.735
5 C 0.257 3.743
6 C -0.237 4.237
7 C -0.032 4.032
8 C -0.283 4.283
9 C 0.152 3.848
10 O -0.343 6.343
11 C 0.087 3.913
12 C 0.028 3.972
13 C -0.546 4.546
14 H 0.071 0.929
15 C 0.000 4.000
16 N -0.931 5.931
17 Si 0.977 3.023
18 H -0.270 1.270
19 H -0.281 1.281
20 H -0.259 1.259
21 C -0.255 4.255
22 C -0.090 4.090
23 C -0.153 4.153
24 C 0.058 3.942
25 O -0.405 6.405
26 C 0.055 3.945
27 C -0.147 4.147
28 H 0.049 0.951
29 H 0.057 0.943
30 H 0.081 0.919
31 H 0.401 0.599
32 H 0.146 0.854
33 H 0.149 0.851
34 H 0.120 0.880
35 H 0.059 0.941
36 H 0.059 0.941
37 H -0.002 1.002
38 H -0.002 1.002
39 H 0.267 0.733
40 H 0.120 0.880
41 H 0.075 0.925
42 H 0.075 0.925
43 H 0.075 0.925
44 H 0.053 0.947
45 H 0.098 0.902
46 H 0.054 0.946
47 H 0.105 0.895
48 H 0.090 0.910
49 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.171 5.411 30.768 32.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.052 3.948
3 H 0.103 0.897
4 N -0.364 5.364
5 C 0.152 3.848
6 C -0.259 4.259
7 C -0.051 4.051
8 C -0.304 4.304
9 C 0.106 3.894
10 O -0.257 6.257
11 C 0.012 3.988
12 C -0.009 4.009
13 C -0.584 4.584
14 H 0.089 0.911
15 C -0.198 4.198
16 N -0.570 5.570
17 Si 0.801 3.199
18 H -0.195 1.195
19 H -0.206 1.206
20 H -0.183 1.183
21 C -0.278 4.278
22 C -0.109 4.109
23 C -0.190 4.190
24 C -0.019 4.019
25 O -0.324 6.324
26 C -0.021 4.021
27 C -0.185 4.185
28 H 0.068 0.932
29 H 0.076 0.924
30 H 0.100 0.900
31 H 0.237 0.763
32 H 0.163 0.837
33 H 0.166 0.834
34 H 0.138 0.862
35 H 0.077 0.923
36 H 0.077 0.923
37 H 0.016 0.984
38 H 0.016 0.984
39 H 0.076 0.924
40 H 0.138 0.862
41 H 0.094 0.906
42 H 0.094 0.906
43 H 0.093 0.907
44 H 0.072 0.928
45 H 0.117 0.883
46 H 0.072 0.928
47 H 0.123 0.877
48 H 0.108 0.892
49 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -8.245 5.103 30.934 32.418
hybrid contribution 0.576 -0.262 -1.548 1.673
sum -7.668 4.840 29.386 30.753
Atomic orbital electron populations
1.22384 0.95460 1.02518 1.02475 1.20971 0.93954 0.96745 0.83086
0.89658 1.44846 1.72670 1.12471 1.06410 1.17406 0.90676 0.91392
0.85326 1.20772 1.12613 0.92898 0.99625 1.20965 0.93155 1.00118
0.90847 1.21213 1.13585 0.94106 1.01479 1.19158 0.92013 0.91784
0.86492 1.86051 1.80345 1.41043 1.18242 1.22833 1.00119 0.94252
0.81557 1.18974 0.95157 0.95142 0.91654 1.21398 1.45156 0.97140
0.94678 0.91122 1.26063 0.94392 0.96253 1.03099 1.70123 1.44645
1.12955 1.29285 0.85265 0.79075 0.78312 0.77285 1.19512 1.20610
1.18319 1.19778 1.16244 1.00807 0.90981 1.21383 1.00560 0.95038
0.93936 1.22292 1.02407 0.95868 0.98454 1.22650 0.98572 0.95672
0.84961 1.87915 1.72226 1.25648 1.46641 1.22727 0.98667 0.81973
0.98745 1.22262 1.02630 1.00098 0.93464 0.93157 0.92421 0.90027
0.76286 0.83687 0.83362 0.86166 0.92315 0.92283 0.98371 0.98375
0.92444 0.86160 0.90636 0.90641 0.90685 0.92834 0.88343 0.92810
0.87689 0.89159 0.90216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.07 8.73 71.98 0.63 -1.44 16
2 C 0.16 1.95 2.10 44.99 0.09 2.05 16
3 H 0.09 1.03 6.48 -2.39 -0.02 1.02 16
4 N -0.73 -12.91 5.17 -318.99 -1.65 -14.56 16
5 C 0.26 6.33 6.63 38.20 0.25 6.58 16
6 C -0.24 -5.34 8.85 22.42 0.20 -5.14 16
7 C -0.03 -0.81 10.03 22.24 0.22 -0.59 16
8 C -0.28 -9.21 9.04 22.39 0.20 -9.00 16
9 C 0.15 5.66 6.68 22.49 0.15 5.81 16
10 O -0.34 -15.34 10.13 -92.32 -0.94 -16.27 16
11 C 0.09 3.97 4.68 71.98 0.34 4.31 16
12 C 0.03 1.57 5.34 29.85 0.16 1.73 16
13 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16
14 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16
15 C 0.00 0.02 5.46 84.66 0.46 0.49 16
16 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16
17 Si 0.98 43.99 29.54 68.60 2.03 46.02 16
18 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16
19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
20 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16
21 C -0.25 -8.07 9.83 22.49 0.22 -7.85 16
22 C -0.09 -0.91 2.26 -10.68 -0.02 -0.94 16
23 C -0.15 -1.64 4.92 30.68 0.15 -1.49 16
24 C 0.06 0.67 6.84 72.02 0.49 1.16 16
25 O -0.40 -5.96 10.77 -148.98 -1.60 -7.56 16
26 C 0.06 0.53 6.84 72.01 0.49 1.02 16
27 C -0.15 -1.18 5.15 30.68 0.16 -1.02 16
28 H 0.05 0.75 7.71 -2.39 -0.02 0.73 16
29 H 0.06 0.76 6.37 -2.39 -0.02 0.74 16
30 H 0.08 0.73 6.36 -2.39 -0.02 0.71 16
31 H 0.40 6.49 6.95 -92.71 -0.64 5.84 16
32 H 0.15 2.42 6.11 -2.91 -0.02 2.40 16
33 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16
34 H 0.12 3.93 6.29 -2.91 -0.02 3.91 16
35 H 0.06 2.55 7.65 -2.39 -0.02 2.53 16
36 H 0.06 2.56 7.67 -2.39 -0.02 2.54 16
37 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16
38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16
39 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16
40 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16
41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
42 H 0.08 0.89 6.28 -2.39 -0.01 0.88 16
43 H 0.07 0.77 6.64 -2.38 -0.02 0.76 16
44 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
46 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16
47 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16
48 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
49 H 0.08 0.66 6.28 -2.39 -0.02 0.65 16
Total: -1.00 -69.54 380.80 2.85 -66.69
By element:
Atomic # 1 Polarization: 17.93 SS G_CDS: 0.30 Total: 18.23 kcal
Atomic # 6 Polarization: -39.93 SS G_CDS: 4.43 Total: -35.50 kcal
Atomic # 7 Polarization: -70.23 SS G_CDS: -1.36 Total: -71.60 kcal
Atomic # 8 Polarization: -21.30 SS G_CDS: -2.54 Total: -23.84 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal
Total: -69.54 2.85 -66.69 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000346551481.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.329 kcal
(2) G-P(sol) polarization free energy of solvation -69.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds