Wall clock time and date at job start Tue Mar 31 2020 12:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52993 * 109.47202 * 119.99974 * 2 1 3 5 5 O 1.42901 * 109.47365 * 294.99958 * 4 2 1 6 6 C 1.53004 * 109.46815 * 239.99961 * 2 1 3 7 7 C 1.53000 * 109.47331 * 65.00276 * 6 2 1 8 8 C 1.52993 * 109.47020 * 179.97438 * 7 6 2 9 9 N 1.46504 * 109.46912 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00001 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99887 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99879 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.46794 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47290 * 54.99871 * 13 12 10 15 15 C 1.50703 * 109.47207 * 294.99763 * 13 12 10 16 16 H 1.07999 * 119.99608 * 325.84358 * 15 13 12 17 17 C 1.37878 * 119.99761 * 145.84803 * 15 13 12 18 18 N 1.31514 * 119.99941 * 6.11467 * 17 15 13 19 19 Si 1.86794 * 119.99558 * 186.12094 * 17 15 13 20 20 H 1.48497 * 109.47651 * 359.97438 * 19 17 15 21 21 H 1.48509 * 109.47219 * 119.99991 * 19 17 15 22 22 H 1.48504 * 109.46948 * 239.99601 * 19 17 15 23 23 C 1.50698 * 109.46857 * 174.99760 * 13 12 10 24 24 C 1.38236 * 120.00203 * 63.46960 * 23 13 12 25 25 C 1.38233 * 119.99921 * 179.80971 * 24 23 13 26 26 C 1.38237 * 120.00327 * 0.39432 * 25 24 23 27 27 C 1.38240 * 119.99427 * 359.86273 * 26 25 24 28 28 C 1.38227 * 120.00571 * 359.94926 * 27 26 25 29 29 H 1.09001 * 109.47180 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47092 * 60.00049 * 1 2 3 32 32 H 1.08997 * 109.47576 * 54.99865 * 4 2 1 33 33 H 1.08998 * 109.47460 * 174.99861 * 4 2 1 34 34 H 0.96698 * 114.00480 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.46715 * 184.99900 * 6 2 1 36 36 H 1.08995 * 109.47010 * 304.99577 * 6 2 1 37 37 H 1.09004 * 109.46660 * 299.99949 * 7 6 2 38 38 H 1.08999 * 109.46949 * 59.99518 * 7 6 2 39 39 H 1.08992 * 109.47210 * 299.99402 * 8 7 6 40 40 H 1.08999 * 109.47475 * 60.00059 * 8 7 6 41 41 H 0.96995 * 120.00236 * 0.02562 * 9 8 7 42 42 H 1.09001 * 109.47013 * 299.99319 * 12 10 9 43 43 H 1.08996 * 109.47328 * 59.99936 * 12 10 9 44 44 H 0.97004 * 119.99087 * 180.02562 * 18 17 15 45 45 H 1.07998 * 119.99550 * 359.97438 * 24 23 13 46 46 H 1.08007 * 119.99752 * 180.23210 * 25 24 23 47 47 H 1.07997 * 120.00289 * 179.83295 * 26 25 24 48 48 H 1.07998 * 119.99203 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00420 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 0.0168 2.4130 6 6 2.0400 -0.7213 -1.2493 7 6 1.6352 0.0689 -2.4954 8 6 2.1457 -0.6521 -3.7445 9 7 1.7577 0.1043 -4.9377 10 6 2.1011 -0.3445 -6.1613 11 8 2.7318 -1.3742 -6.2745 12 6 1.7024 0.4338 -7.3886 13 6 2.2128 -0.2873 -8.6378 14 1 1.8497 -1.3151 -8.6379 15 6 3.7198 -0.2869 -8.6376 16 1 4.2594 0.5551 -8.2298 17 6 4.4095 -1.3613 -9.1582 18 7 3.7579 -2.3306 -9.7626 19 14 6.2695 -1.4401 -9.0046 20 1 6.7586 -0.2351 -8.2878 21 1 6.6524 -2.6577 -8.2455 22 1 6.8763 -1.4900 -10.3591 23 6 1.7104 0.4231 -9.8683 24 6 2.1021 1.7239 -10.1238 25 6 1.6444 2.3741 -11.2545 26 6 0.7885 1.7263 -12.1256 27 6 0.3926 0.4272 -11.8672 28 6 0.8533 -0.2243 -10.7386 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.9532 -0.3828 3.2440 35 1 3.1263 -0.7995 -1.2056 36 1 1.6054 -1.7198 -1.2951 37 1 0.5489 0.1471 -2.5390 38 1 2.0699 1.0674 -2.4494 39 1 3.2320 -0.7299 -3.7007 40 1 1.7114 -1.6507 -3.7907 41 1 1.2536 0.9280 -4.8471 42 1 0.6160 0.5120 -7.4322 43 1 2.1371 1.4323 -7.3428 44 1 4.2432 -3.0866 -10.1285 45 1 2.7679 2.2312 -9.4413 46 1 1.9534 3.3892 -11.4561 47 1 0.4287 2.2352 -13.0076 48 1 -0.2765 -0.0787 -12.5476 49 1 0.5443 -1.2393 -10.5370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356542483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:55 Heat of formation + Delta-G solvation = -115.547359 kcal Electronic energy + Delta-G solvation = -26115.675460 eV Core-core repulsion = 22426.433752 eV Total energy + Delta-G solvation = -3689.241708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64273 -39.69966 -38.81225 -36.93817 -35.79694 -35.12160 -33.41640 -31.84079 -31.48111 -30.18867 -27.82719 -27.42971 -26.13564 -24.32200 -23.12537 -22.61116 -21.71173 -21.01828 -20.63623 -18.50340 -18.22781 -17.87324 -17.12943 -16.85716 -16.78025 -16.34176 -16.23410 -15.69610 -15.56435 -15.34059 -15.13882 -14.64572 -14.44968 -14.12235 -13.97219 -13.79057 -13.57533 -13.53711 -13.22664 -13.17700 -12.92628 -12.86184 -12.54155 -12.49438 -12.43448 -12.25166 -11.81204 -11.77995 -11.64297 -11.54019 -11.37093 -11.29982 -10.93730 -10.85867 -10.62479 -10.32398 -9.87665 -9.52585 -9.17230 -8.03733 -6.05766 0.79558 0.85861 1.34679 1.38522 1.46004 2.02079 2.44640 2.46492 3.20065 3.32703 3.37588 3.89342 3.91299 4.09356 4.18308 4.23211 4.27277 4.37033 4.39912 4.42961 4.48341 4.56969 4.61012 4.65635 4.68124 4.74460 4.78530 4.79841 4.91741 4.94605 4.98057 5.02016 5.13989 5.20358 5.22944 5.28372 5.39539 5.45618 5.49660 5.54724 5.65195 5.70591 5.80177 5.85388 5.97322 6.19091 6.43491 6.48352 6.84603 6.90745 7.02497 7.56896 7.65434 9.06264 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002557 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.126927 B =10945.757621 C =12335.031423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.072 0.928 4 C 0.077 3.923 5 O -0.593 6.593 6 C -0.108 4.108 7 C -0.115 4.115 8 C 0.121 3.879 9 N -0.730 5.730 10 C 0.508 3.492 11 O -0.560 6.560 12 C -0.117 4.117 13 C 0.082 3.918 14 H 0.022 0.978 15 C -0.483 4.483 16 H 0.047 0.953 17 C 0.021 3.979 18 N -0.918 5.918 19 Si 0.935 3.065 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.412 0.588 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.253 0.747 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.131 0.869 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 8.788 15.961 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.001 4.001 5 O -0.401 6.401 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.003 4.003 9 N -0.385 5.385 10 C 0.295 3.705 11 O -0.436 6.436 12 C -0.157 4.157 13 C 0.063 3.937 14 H 0.041 0.959 15 C -0.521 4.521 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.558 5.558 19 Si 0.763 3.237 20 H -0.190 1.190 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.047 4.047 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.134 0.866 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.149 0.851 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.007 8.258 15.356 19.187 hybrid contribution 1.385 -0.939 0.384 1.717 sum -6.621 7.320 15.740 18.579 Atomic orbital electron populations 1.21809 0.94532 1.01902 1.01855 1.21084 0.96822 1.00070 0.92827 0.91002 1.22279 0.98399 0.94267 0.85159 1.86418 1.81943 1.54242 1.17532 1.21440 1.01352 0.99292 0.92529 1.21717 1.02355 0.99595 0.91625 1.21274 0.99047 0.95357 0.84636 1.45962 1.58983 1.28546 1.04994 1.21074 0.78447 0.85505 0.85471 1.90736 1.39642 1.26278 1.86944 1.21677 1.01455 0.99886 0.92644 1.17621 0.94493 0.94030 0.87565 0.95942 1.21015 0.91312 1.02449 1.37286 0.93498 1.25499 1.01287 0.95832 0.95105 1.70067 1.36221 1.10561 1.38910 0.85855 0.82742 0.77767 0.77346 1.18961 1.21918 1.20823 1.20577 0.92271 0.93871 0.97933 1.21036 1.00183 0.94682 0.98630 1.21372 0.97998 1.00625 0.94408 1.21262 0.99790 0.94966 1.00554 1.21279 1.00715 0.95805 0.96825 1.21096 0.99469 0.99058 0.96567 0.92977 0.92705 0.91857 0.92933 0.93037 0.75525 0.91461 0.91264 0.89791 0.90328 0.93803 0.93426 0.75162 0.89037 0.88544 0.93838 0.86617 0.84128 0.83884 0.85092 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.85 71.98 0.64 -1.47 16 2 C -0.09 -1.32 2.63 -10.79 -0.03 -1.35 16 3 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.08 1.03 6.43 71.98 0.46 1.49 16 5 O -0.59 -8.67 13.19 -148.98 -1.97 -10.63 16 6 C -0.11 -1.67 4.68 30.60 0.14 -1.52 16 7 C -0.12 -1.95 5.08 30.59 0.16 -1.79 16 8 C 0.12 3.17 5.67 86.38 0.49 3.66 16 9 N -0.73 -21.02 5.56 -463.07 -2.57 -23.59 16 10 C 0.51 20.68 7.58 87.66 0.66 21.34 16 11 O -0.56 -29.62 14.98 -3.03 -0.05 -29.66 16 12 C -0.12 -4.52 4.95 29.85 0.15 -4.37 16 13 C 0.08 4.09 1.67 -12.28 -0.02 4.07 16 14 H 0.02 1.32 6.98 -2.39 -0.02 1.31 16 15 C -0.48 -26.89 6.37 25.60 0.16 -26.72 16 16 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 17 C 0.02 1.25 5.45 84.65 0.46 1.71 16 18 N -0.92 -57.22 12.87 21.45 0.28 -56.94 16 19 Si 0.94 47.40 29.54 68.60 2.03 49.43 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 22 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.05 -2.07 4.77 -19.86 -0.09 -2.16 16 24 C -0.13 -4.97 8.86 22.27 0.20 -4.78 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.15 -4.61 10.05 22.27 0.22 -4.39 16 27 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 28 C -0.14 -6.22 9.67 22.27 0.22 -6.00 16 29 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.40 2.26 9.12 -74.06 -0.68 1.59 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.24 6.57 -2.38 -0.02 1.22 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 8.56 8.47 -92.71 -0.79 7.77 16 42 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 43 H 0.10 3.32 7.77 -2.39 -0.02 3.30 16 44 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.12 4.35 7.76 -2.91 -0.02 4.33 16 46 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 47 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 48 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.27 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -77.81 400.99 1.45 -76.35 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.53 Total: 25.52 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 4.26 Total: -30.47 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.30 Total: -80.53 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.01 Total: -40.30 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -77.81 1.45 -76.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356542483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.195 kcal (2) G-P(sol) polarization free energy of solvation -77.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds