Wall clock time and date at job start Tue Mar 31 2020 13:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46817 * 2 1 4 4 N 1.46494 * 109.47339 * 239.99631 * 2 1 3 5 5 C 1.39670 * 119.99928 * 85.00026 * 4 2 1 6 6 C 1.38970 * 120.04439 * 359.97438 * 5 4 2 7 7 C 1.38115 * 120.03340 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.12705 * 0.02562 * 7 6 5 9 9 C 1.38769 * 120.09336 * 359.97438 * 8 7 6 10 10 O 1.35892 * 120.01672 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00108 * 0.02562 * 10 9 8 12 12 C 1.52999 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47114 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00407 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99864 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46983 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.46977 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47189 * 300.00041 * 17 15 13 21 21 C 1.38621 * 119.96433 * 359.74566 * 9 8 7 22 22 C 1.53001 * 109.46767 * 119.99779 * 2 1 3 23 23 H 1.09000 * 109.52248 * 60.12656 * 22 2 1 24 24 C 1.53180 * 109.52251 * 299.99681 * 22 2 1 25 25 C 1.53175 * 109.03606 * 183.11473 * 24 22 2 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 24 22 27 27 O 1.42905 * 109.41215 * 302.38824 * 26 25 24 28 28 C 1.42905 * 114.09831 * 61.16158 * 27 26 25 29 29 H 1.08996 * 109.47489 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.47194 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.47709 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99883 * 265.00403 * 4 2 1 33 33 H 1.08000 * 119.98299 * 359.95646 * 6 5 4 34 34 H 1.07999 * 119.93939 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.94853 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46834 * 299.99031 * 11 10 9 37 37 H 1.08993 * 109.47616 * 59.99200 * 11 10 9 38 38 H 1.08999 * 109.47472 * 299.99917 * 12 11 10 39 39 H 1.09005 * 109.47420 * 59.99509 * 12 11 10 40 40 H 0.96994 * 120.00018 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.06335 * 180.25383 * 21 9 8 42 42 H 1.09005 * 109.54069 * 63.25065 * 24 22 2 43 43 H 1.08996 * 109.62096 * 303.02972 * 24 22 2 44 44 H 1.09004 * 109.52714 * 297.07587 * 25 24 22 45 45 H 1.09001 * 109.57654 * 176.92317 * 25 24 22 46 46 H 1.08997 * 109.48111 * 182.40965 * 26 25 24 47 47 H 1.09000 * 109.48212 * 62.37239 * 26 25 24 48 48 H 1.09000 * 109.47932 * 58.81878 * 28 27 26 49 49 H 1.08993 * 109.48024 * 178.86013 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1518 0.0061 -2.3992 6 6 1.8210 1.3543 -2.4629 7 6 1.9535 2.0432 -3.6526 8 6 2.4146 1.3940 -4.7825 9 6 2.7464 0.0478 -4.7249 10 8 3.1990 -0.5889 -5.8368 11 6 3.3091 0.1890 -7.0304 12 6 3.8316 -0.6920 -8.1670 13 6 3.9471 0.1283 -9.4259 14 1 3.6754 1.1735 -9.4163 15 6 4.3996 -0.4556 -10.5901 16 7 4.7300 -1.7286 -10.6020 17 14 4.5434 0.5613 -12.1504 18 1 5.4861 1.6859 -11.9232 19 1 5.0504 -0.2938 -13.2536 20 1 3.2085 1.1003 -12.5148 21 6 2.6204 -0.6459 -3.5314 22 6 2.0399 -0.7212 1.2493 23 1 1.6788 -1.7497 1.2490 24 6 1.5300 0.0001 2.5008 25 6 2.1098 -0.6838 3.7427 26 6 3.6380 -0.6790 3.6516 27 8 4.0443 -1.3379 2.4504 28 6 3.5708 -0.7150 1.2545 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1524 33 1 1.4598 1.8636 -1.5816 34 1 1.6956 3.0908 -3.7005 35 1 2.5167 1.9354 -5.7115 36 1 2.3292 0.5844 -7.2980 37 1 4.0009 1.0146 -6.8636 38 1 4.8115 -1.0872 -7.8993 39 1 3.1401 -1.5179 -8.3340 40 1 5.0487 -2.1392 -11.4209 41 1 2.8820 -1.6926 -3.4837 42 1 0.4415 -0.0494 2.5320 43 1 1.8470 1.0426 2.4770 44 1 1.7511 -1.7118 3.7935 45 1 1.7965 -0.1442 4.6365 46 1 4.0550 -1.2023 4.5120 47 1 3.9984 0.3496 3.6418 48 1 3.9303 0.3132 1.2134 49 1 3.9394 -1.2642 0.3882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356851004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:26 Heat of formation + Delta-G solvation = -80.951557 kcal Electronic energy + Delta-G solvation = -26141.315126 eV Core-core repulsion = 22453.573605 eV Total energy + Delta-G solvation = -3687.741522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29672 -39.56938 -37.94637 -36.17957 -33.89220 -33.31353 -32.09397 -30.80693 -29.95027 -28.97280 -28.19040 -25.55700 -24.93128 -24.20756 -22.68783 -22.36654 -21.13460 -20.39508 -20.21111 -18.02059 -16.93183 -16.52238 -16.31190 -16.08693 -15.63647 -15.49127 -15.23704 -15.14690 -14.84188 -14.55836 -14.38716 -13.82374 -13.64228 -13.48496 -13.34576 -13.07953 -12.72046 -12.53164 -12.28898 -12.13639 -12.01806 -11.66401 -11.59423 -11.49675 -11.33578 -11.08980 -11.01097 -10.86558 -10.74612 -10.68944 -10.41583 -10.05441 -9.82003 -9.67949 -9.61765 -9.27836 -8.42248 -7.93431 -7.32358 -6.07529 -4.12035 1.73003 1.88422 3.16954 3.30625 3.34888 3.36980 3.47181 4.01348 4.12453 4.18507 4.31416 4.37827 4.44710 4.45054 4.67055 4.84654 4.91438 5.02213 5.06461 5.11098 5.15980 5.28648 5.31513 5.33919 5.36667 5.39782 5.43704 5.49935 5.56093 5.59869 5.62604 5.71729 5.79924 5.82480 5.97051 6.10486 6.11555 6.13862 6.42432 6.64525 6.68557 6.77311 6.80499 6.90945 7.39290 7.54441 7.67088 7.68085 7.86232 8.14252 8.27626 8.93422 9.51956 11.04015 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.001934 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.477939 B =14474.163682 C =14952.774764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.159 3.841 3 H 0.080 0.920 4 N -0.745 5.745 5 C 0.249 3.751 6 C -0.245 4.245 7 C -0.037 4.037 8 C -0.264 4.264 9 C 0.188 3.812 10 O -0.316 6.316 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.238 4.238 22 C -0.129 4.129 23 H 0.084 0.916 24 C -0.116 4.116 25 C -0.156 4.156 26 C 0.057 3.943 27 O -0.382 6.382 28 C 0.067 3.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.398 0.602 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 4.757 30.053 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 H 0.098 0.902 4 N -0.375 5.375 5 C 0.146 3.854 6 C -0.268 4.268 7 C -0.056 4.056 8 C -0.285 4.285 9 C 0.140 3.860 10 O -0.229 6.229 11 C -0.008 4.008 12 C -0.012 4.012 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.261 4.261 22 C -0.148 4.148 23 H 0.102 0.898 24 C -0.154 4.154 25 C -0.193 4.193 26 C -0.019 4.019 27 O -0.300 6.300 28 C -0.010 4.010 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.448 4.364 30.022 31.239 hybrid contribution -0.117 0.607 -0.989 1.167 sum -7.566 4.971 29.033 30.411 Atomic orbital electron populations 1.22339 0.95719 1.02529 1.02316 1.20792 0.93745 0.96695 0.83480 0.90172 1.44659 1.73871 1.12212 1.06790 1.17325 0.92019 0.90940 0.85071 1.20403 1.14222 0.93251 0.98901 1.20618 0.94601 0.98714 0.91684 1.21148 1.12171 0.94688 1.00472 1.18828 0.89714 0.90501 0.86961 1.86147 1.78834 1.40329 1.17578 1.23310 0.99894 0.95481 0.82073 1.19124 0.97309 0.95239 0.89545 1.20943 1.45154 0.96416 0.93929 0.92403 1.24994 0.95116 0.95025 0.99087 1.69967 1.43801 1.10914 1.28109 0.86544 0.78530 0.79955 0.82316 1.20109 1.21140 1.20108 1.19676 1.15027 1.00814 0.90605 1.22069 0.97034 1.01117 0.94603 0.89784 1.21651 1.01109 0.99365 0.93262 1.22191 0.96697 1.01998 0.98457 1.22596 0.93942 0.97523 0.87881 1.87971 1.74346 1.53883 1.13843 1.22624 0.92352 0.98371 0.87640 0.91820 0.91777 0.92334 0.76710 0.86687 0.86443 0.85629 0.93110 0.93102 0.95431 0.95441 0.92680 0.85785 0.90786 0.91503 0.90985 0.90744 0.88963 0.93201 0.93011 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 9.07 37.16 0.34 -0.87 16 2 C 0.16 1.18 1.85 -67.93 -0.13 1.06 16 3 H 0.08 0.62 6.48 -51.93 -0.34 0.29 16 4 N -0.74 -7.12 4.60 -52.19 -0.24 -7.36 16 5 C 0.25 3.20 6.63 -83.81 -0.56 2.64 16 6 C -0.25 -3.06 8.84 -39.36 -0.35 -3.41 16 7 C -0.04 -0.51 10.03 -39.63 -0.40 -0.90 16 8 C -0.26 -4.31 9.04 -39.39 -0.36 -4.66 16 9 C 0.19 3.40 6.68 -39.24 -0.26 3.14 16 10 O -0.32 -6.72 10.13 -19.40 -0.20 -6.92 16 11 C 0.07 1.46 4.68 37.16 0.17 1.64 16 12 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 13 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.24 -3.71 9.83 -39.23 -0.39 -4.09 16 22 C -0.13 -0.85 2.02 -90.48 -0.18 -1.03 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 C -0.12 -0.62 4.86 -26.55 -0.13 -0.74 16 25 C -0.16 -0.81 6.14 -26.59 -0.16 -0.97 16 26 C 0.06 0.37 6.84 37.20 0.25 0.62 16 27 O -0.38 -3.55 10.77 -35.23 -0.38 -3.93 16 28 C 0.07 0.54 5.93 37.21 0.22 0.76 16 29 H 0.06 0.35 6.51 -51.93 -0.34 0.01 16 30 H 0.06 0.55 7.70 -51.93 -0.40 0.15 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.40 3.48 8.43 -40.82 -0.34 3.14 16 33 H 0.12 1.18 6.10 -52.49 -0.32 0.86 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 36 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 37 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.07 0.35 6.62 -51.93 -0.34 0.00 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.84 7.55 -51.93 -0.39 0.45 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -31.18 386.61 -9.97 -41.15 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.21 Total: 0.63 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.48 Total: -19.86 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.50 Total: -33.33 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.58 Total: -10.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.18 -9.97 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356851004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.800 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds