Wall clock time and date at job start Tue Mar 31 2020 13:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46817 * 2 1 4 4 N 1.46494 * 109.47339 * 239.99631 * 2 1 3 5 5 C 1.39670 * 119.99928 * 85.00026 * 4 2 1 6 6 C 1.38970 * 120.04439 * 359.97438 * 5 4 2 7 7 C 1.38115 * 120.03340 * 179.97438 * 6 5 4 8 8 C 1.38227 * 120.12705 * 0.02562 * 7 6 5 9 9 C 1.38769 * 120.09336 * 359.97438 * 8 7 6 10 10 O 1.35892 * 120.01672 * 179.97438 * 9 8 7 11 11 C 1.42899 * 117.00108 * 0.02562 * 10 9 8 12 12 C 1.52999 * 109.47191 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47114 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00407 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99872 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00267 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99864 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46983 * 60.00054 * 17 15 13 19 19 H 1.48501 * 109.46977 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47189 * 300.00041 * 17 15 13 21 21 C 1.38621 * 119.96433 * 359.74566 * 9 8 7 22 22 C 1.53001 * 109.46767 * 119.99779 * 2 1 3 23 23 H 1.09000 * 109.52248 * 60.12656 * 22 2 1 24 24 C 1.53180 * 109.52251 * 299.99681 * 22 2 1 25 25 C 1.53175 * 109.03606 * 183.11473 * 24 22 2 26 26 C 1.53092 * 109.16344 * 56.98567 * 25 24 22 27 27 O 1.42905 * 109.41215 * 302.38824 * 26 25 24 28 28 C 1.42905 * 114.09831 * 61.16158 * 27 26 25 29 29 H 1.08996 * 109.47489 * 300.00163 * 1 2 3 30 30 H 1.08998 * 109.47194 * 60.00394 * 1 2 3 31 31 H 1.09002 * 109.47709 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99883 * 265.00403 * 4 2 1 33 33 H 1.08000 * 119.98299 * 359.95646 * 6 5 4 34 34 H 1.07999 * 119.93939 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.94853 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46834 * 299.99031 * 11 10 9 37 37 H 1.08993 * 109.47616 * 59.99200 * 11 10 9 38 38 H 1.08999 * 109.47472 * 299.99917 * 12 11 10 39 39 H 1.09005 * 109.47420 * 59.99509 * 12 11 10 40 40 H 0.96994 * 120.00018 * 180.02562 * 16 15 13 41 41 H 1.07997 * 120.06335 * 180.25383 * 21 9 8 42 42 H 1.09005 * 109.54069 * 63.25065 * 24 22 2 43 43 H 1.08996 * 109.62096 * 303.02972 * 24 22 2 44 44 H 1.09004 * 109.52714 * 297.07587 * 25 24 22 45 45 H 1.09001 * 109.57654 * 176.92317 * 25 24 22 46 46 H 1.08997 * 109.48111 * 182.40965 * 26 25 24 47 47 H 1.09000 * 109.48212 * 62.37239 * 26 25 24 48 48 H 1.09000 * 109.47932 * 58.81878 * 28 27 26 49 49 H 1.08993 * 109.48024 * 178.86013 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1518 0.0061 -2.3992 6 6 1.8210 1.3543 -2.4629 7 6 1.9535 2.0432 -3.6526 8 6 2.4146 1.3940 -4.7825 9 6 2.7464 0.0478 -4.7249 10 8 3.1990 -0.5889 -5.8368 11 6 3.3091 0.1890 -7.0304 12 6 3.8316 -0.6920 -8.1670 13 6 3.9471 0.1283 -9.4259 14 1 3.6754 1.1735 -9.4163 15 6 4.3996 -0.4556 -10.5901 16 7 4.7300 -1.7286 -10.6020 17 14 4.5434 0.5613 -12.1504 18 1 5.4861 1.6859 -11.9232 19 1 5.0504 -0.2938 -13.2536 20 1 3.2085 1.1003 -12.5148 21 6 2.6204 -0.6459 -3.5314 22 6 2.0399 -0.7212 1.2493 23 1 1.6788 -1.7497 1.2490 24 6 1.5300 0.0001 2.5008 25 6 2.1098 -0.6838 3.7427 26 6 3.6380 -0.6790 3.6516 27 8 4.0443 -1.3379 2.4504 28 6 3.5708 -0.7150 1.2545 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.2490 -1.6318 -1.1524 33 1 1.4598 1.8636 -1.5816 34 1 1.6956 3.0908 -3.7005 35 1 2.5167 1.9354 -5.7115 36 1 2.3292 0.5844 -7.2980 37 1 4.0009 1.0146 -6.8636 38 1 4.8115 -1.0872 -7.8993 39 1 3.1401 -1.5179 -8.3340 40 1 5.0487 -2.1392 -11.4209 41 1 2.8820 -1.6926 -3.4837 42 1 0.4415 -0.0494 2.5320 43 1 1.8470 1.0426 2.4770 44 1 1.7511 -1.7118 3.7935 45 1 1.7965 -0.1442 4.6365 46 1 4.0550 -1.2023 4.5120 47 1 3.9984 0.3496 3.6418 48 1 3.9303 0.3132 1.2134 49 1 3.9394 -1.2642 0.3882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356851004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:26 Heat of formation + Delta-G solvation = -98.859320 kcal Electronic energy + Delta-G solvation = -26142.091665 eV Core-core repulsion = 22453.573605 eV Total energy + Delta-G solvation = -3688.518060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.17635 -40.56626 -39.07854 -37.12779 -35.46036 -34.54760 -32.80311 -32.52418 -30.96669 -30.08880 -29.16991 -26.98306 -26.01684 -24.80749 -23.85670 -23.62552 -22.34799 -21.42370 -21.00280 -19.32888 -18.34317 -17.61075 -17.18205 -16.97463 -16.89973 -16.72338 -16.59313 -16.44550 -15.87390 -15.68874 -15.08983 -14.62378 -14.46221 -14.38760 -14.30380 -14.16470 -14.08026 -13.94434 -13.53847 -13.19723 -13.01251 -12.79717 -12.62377 -12.57559 -12.54711 -12.27646 -12.05512 -11.97200 -11.87093 -11.61708 -11.55385 -11.52208 -11.38244 -11.23799 -10.87060 -10.61011 -10.36962 -9.21060 -8.32952 -8.26024 -6.39948 0.58732 0.71228 1.40945 1.45359 1.53295 2.16476 2.39958 2.73872 2.91986 2.97804 3.07989 3.64142 3.79956 3.82521 4.00966 4.02376 4.17298 4.24071 4.26494 4.29204 4.33560 4.35696 4.43890 4.48273 4.52648 4.57288 4.68357 4.69444 4.75280 4.81770 4.84300 4.91995 4.92839 4.97824 5.07581 5.13326 5.19320 5.31117 5.34866 5.36904 5.43128 5.47318 5.54248 5.66030 5.68278 5.78306 6.07630 6.25160 6.44113 6.63085 6.74591 6.80189 7.29972 8.86925 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029639 B = 0.001934 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.477939 B =14474.163682 C =14952.774764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.159 3.841 3 H 0.086 0.914 4 N -0.736 5.736 5 C 0.258 3.742 6 C -0.236 4.236 7 C -0.032 4.032 8 C -0.283 4.283 9 C 0.151 3.849 10 O -0.343 6.343 11 C 0.087 3.913 12 C 0.028 3.972 13 C -0.547 4.547 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.978 3.022 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.263 1.263 21 C -0.254 4.254 22 C -0.118 4.118 23 H 0.079 0.921 24 C -0.114 4.114 25 C -0.152 4.152 26 C 0.049 3.951 27 O -0.407 6.407 28 C 0.065 3.935 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.402 0.598 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.059 0.941 38 H -0.003 1.003 39 H -0.002 1.002 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 7.229 32.001 34.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.054 3.946 3 H 0.104 0.896 4 N -0.365 5.365 5 C 0.154 3.846 6 C -0.258 4.258 7 C -0.051 4.051 8 C -0.303 4.303 9 C 0.105 3.895 10 O -0.257 6.257 11 C 0.013 3.987 12 C -0.009 4.009 13 C -0.585 4.585 14 H 0.089 0.911 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.801 3.199 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.278 4.278 22 C -0.138 4.138 23 H 0.098 0.902 24 C -0.152 4.152 25 C -0.190 4.190 26 C -0.027 4.027 27 O -0.327 6.327 28 C -0.011 4.011 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.237 0.763 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.138 0.862 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.827 6.836 32.033 33.923 hybrid contribution 0.287 -0.219 -1.345 1.393 sum -8.540 6.616 30.688 32.534 Atomic orbital electron populations 1.22306 0.94842 1.02519 1.02842 1.20960 0.94249 0.96765 0.82626 0.89592 1.44820 1.72766 1.12462 1.06447 1.17375 0.90693 0.91366 0.85208 1.20769 1.12595 0.92846 0.99613 1.20966 0.93134 1.00130 0.90845 1.21216 1.13544 0.94018 1.01561 1.19164 0.92045 0.91798 0.86478 1.86054 1.80335 1.41075 1.18261 1.22830 1.00123 0.94245 0.81549 1.18971 0.95135 0.95144 0.91669 1.21371 1.45267 0.97178 0.94647 0.91094 1.26070 0.94367 0.96259 1.03114 1.70119 1.44614 1.12970 1.29313 0.85317 0.79165 0.78243 0.77213 1.18819 1.20732 1.18800 1.19788 1.16092 1.00912 0.90976 1.21960 0.95850 1.01033 0.94937 0.90247 1.21678 1.01793 0.99502 0.92254 1.22168 0.95573 1.01983 0.99238 1.22804 0.95078 0.97798 0.87037 1.87935 1.75022 1.54823 1.14897 1.22613 0.93390 0.98010 0.87123 0.89613 0.92898 0.92687 0.76315 0.83602 0.83330 0.86179 0.92284 0.92290 0.98410 0.98405 0.92445 0.86205 0.89553 0.90713 0.91572 0.88903 0.88200 0.92572 0.92940 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.07 71.98 0.65 -1.19 16 2 C 0.16 1.94 1.85 44.99 0.08 2.02 16 3 H 0.09 1.01 6.48 -2.39 -0.02 1.00 16 4 N -0.74 -12.95 4.60 -319.02 -1.47 -14.42 16 5 C 0.26 6.31 6.63 38.20 0.25 6.57 16 6 C -0.24 -5.24 8.84 22.42 0.20 -5.04 16 7 C -0.03 -0.80 10.03 22.24 0.22 -0.57 16 8 C -0.28 -9.17 9.04 22.39 0.20 -8.97 16 9 C 0.15 5.66 6.68 22.49 0.15 5.81 16 10 O -0.34 -15.44 10.13 -92.34 -0.94 -16.37 16 11 C 0.09 4.00 4.68 71.98 0.34 4.33 16 12 C 0.03 1.58 5.34 29.85 0.16 1.74 16 13 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 14 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 17 Si 0.98 44.11 29.54 68.60 2.03 46.13 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.25 -8.09 9.83 22.49 0.22 -7.86 16 22 C -0.12 -1.31 2.02 -10.70 -0.02 -1.33 16 23 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 24 C -0.11 -0.86 4.86 30.71 0.15 -0.71 16 25 C -0.15 -1.19 6.14 30.68 0.19 -1.00 16 26 C 0.05 0.54 6.84 72.01 0.49 1.04 16 27 O -0.41 -7.24 10.77 -148.98 -1.60 -8.85 16 28 C 0.07 0.98 5.93 72.01 0.43 1.41 16 29 H 0.09 0.60 6.51 -2.39 -0.02 0.58 16 30 H 0.05 0.73 7.70 -2.39 -0.02 0.72 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.40 6.72 8.43 -92.71 -0.78 5.94 16 33 H 0.15 2.35 6.10 -2.91 -0.02 2.33 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.12 3.92 6.29 -2.91 -0.02 3.91 16 36 H 0.06 2.57 7.66 -2.39 -0.02 2.55 16 37 H 0.06 2.56 7.66 -2.39 -0.02 2.55 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.09 0.47 6.62 -2.38 -0.02 0.45 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 1.44 7.55 -2.39 -0.02 1.42 16 Total: -1.00 -70.06 386.61 2.87 -67.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.15 Total: 18.22 kcal Atomic # 6 Polarization: -39.03 SS G_CDS: 4.41 Total: -34.61 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.18 Total: -71.71 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -2.54 Total: -25.22 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.06 2.87 -67.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356851004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.669 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds