Wall clock time and date at job start Tue Mar 31 2020 13:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00070 * 4 3 2 6 6 C 1.53001 * 109.47242 * 295.00540 * 4 3 2 7 7 C 1.52994 * 109.47404 * 174.99993 * 4 3 2 8 8 H 1.09008 * 109.46970 * 60.00049 * 7 4 3 9 9 C 1.52997 * 109.47404 * 180.02562 * 7 4 3 10 10 C 1.50695 * 109.47383 * 300.00353 * 7 4 3 11 11 O 1.21280 * 119.99738 * 359.97438 * 10 7 4 12 12 N 1.34777 * 120.00258 * 180.02562 * 10 7 4 13 13 C 1.46504 * 120.00019 * 180.02562 * 12 10 7 14 14 H 1.08996 * 109.47156 * 34.99249 * 13 12 10 15 15 C 1.52998 * 109.47090 * 154.99822 * 13 12 10 16 16 C 1.50702 * 109.47217 * 294.99547 * 15 13 12 17 17 H 1.08003 * 119.99521 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00108 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47101 * 60.00629 * 20 18 16 22 22 H 1.48506 * 109.46811 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46911 * 299.99950 * 20 18 16 24 24 C 1.50706 * 109.46568 * 274.99627 * 13 12 10 25 25 C 1.38234 * 120.00171 * 319.72366 * 24 13 12 26 26 C 1.38228 * 120.00003 * 179.81352 * 25 24 13 27 27 C 1.38238 * 120.00166 * 0.39984 * 26 25 24 28 28 C 1.38233 * 119.99655 * 359.85391 * 27 26 25 29 29 C 1.38232 * 120.00195 * 359.95894 * 28 27 26 30 30 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.08998 * 109.47430 * 59.99652 * 6 4 3 36 36 H 1.08996 * 109.47271 * 180.02562 * 6 4 3 37 37 H 1.09008 * 109.46731 * 299.99706 * 6 4 3 38 38 H 1.09002 * 109.47754 * 180.02562 * 9 7 4 39 39 H 1.09000 * 109.47325 * 300.00168 * 9 7 4 40 40 H 1.08995 * 109.47630 * 59.99990 * 9 7 4 41 41 H 0.97002 * 120.00154 * 359.97438 * 12 10 7 42 42 H 1.09005 * 109.47066 * 54.99734 * 15 13 12 43 43 H 1.09002 * 109.47305 * 174.99574 * 15 13 12 44 44 H 0.97002 * 120.00203 * 180.02562 * 19 18 16 45 45 H 1.07998 * 119.99782 * 0.02562 * 25 24 13 46 46 H 1.07995 * 120.00229 * 180.23175 * 26 25 24 47 47 H 1.07998 * 120.00447 * 179.84019 * 27 26 25 48 48 H 1.08008 * 120.00186 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.00198 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8428 6 6 3.9963 0.5363 1.3063 7 6 4.1573 2.5768 -0.1264 8 1 3.8420 3.1930 0.7158 9 6 5.6825 2.4559 -0.1276 10 6 3.7035 3.2154 -1.4137 11 8 2.9565 2.6158 -2.1576 12 7 4.1284 4.4524 -1.7388 13 6 3.6867 5.0734 -2.9900 14 1 2.6603 4.7739 -3.2017 15 6 3.7566 6.5959 -2.8562 16 6 2.7698 7.0544 -1.8136 17 1 2.1546 6.3320 -1.2977 18 6 2.6530 8.3959 -1.5176 19 7 3.4025 9.2755 -2.1454 20 14 1.4302 8.9641 -0.2247 21 1 1.7616 8.3365 1.0797 22 1 1.4980 10.4419 -0.0949 23 1 0.0588 8.5658 -0.6316 24 6 4.5828 4.6264 -4.1162 25 6 5.9458 4.5168 -3.9132 26 6 6.7672 4.1031 -4.9451 27 6 6.2267 3.8069 -6.1825 28 6 4.8644 3.9215 -6.3870 29 6 4.0425 4.3315 -5.3540 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.5533 -0.4556 1.3959 36 1 5.0829 0.4506 1.3061 37 1 3.6810 1.1524 2.1485 38 1 6.1256 3.4478 -0.2168 39 1 6.0112 1.9939 0.8033 40 1 5.9976 1.8400 -0.9699 41 1 4.7261 4.9319 -1.1440 42 1 4.7632 6.8885 -2.5573 43 1 3.5136 7.0564 -3.8138 44 1 3.3206 10.2193 -1.9369 45 1 6.3684 4.7511 -2.9474 46 1 7.8316 4.0139 -4.7855 47 1 6.8688 3.4861 -6.9895 48 1 4.4421 3.6905 -7.3539 49 1 2.9782 4.4215 -5.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360379347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:50 Heat of formation + Delta-G solvation = -81.648944 kcal Electronic energy + Delta-G solvation = -27756.104570 eV Core-core repulsion = 24068.332808 eV Total energy + Delta-G solvation = -3687.771763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03713 -38.79646 -37.66477 -35.65303 -34.93594 -32.79529 -31.45693 -30.49192 -29.89987 -28.68710 -27.28465 -26.01373 -25.00911 -23.67388 -22.29585 -21.97284 -21.10268 -19.79211 -19.35273 -17.19141 -16.59282 -16.23887 -16.16071 -15.70794 -15.64156 -15.19940 -14.85589 -14.57092 -14.40355 -14.05263 -13.74262 -13.47948 -13.20350 -13.00795 -12.83170 -12.61859 -12.40972 -12.13614 -12.11591 -11.97720 -11.64192 -11.53243 -11.37727 -11.17061 -11.14764 -10.93198 -10.74472 -10.68432 -10.63807 -10.51117 -10.41150 -9.80282 -9.57683 -9.35820 -9.03155 -8.54842 -8.47597 -8.37336 -8.18000 -6.11632 -4.15330 1.78199 1.80465 3.10816 3.25554 3.31265 3.33518 3.72248 3.85498 4.23891 4.37044 4.84339 4.92704 4.98646 5.23241 5.24950 5.26936 5.27785 5.35426 5.37217 5.39847 5.44744 5.50370 5.53441 5.56506 5.66717 5.70022 5.82556 5.88794 5.90681 5.92279 5.94950 6.05587 6.14855 6.17164 6.34296 6.35651 6.42134 6.45851 6.57323 6.84686 6.85472 6.93381 7.11143 7.30413 7.40584 7.46935 7.60903 7.84661 8.13345 8.23562 8.77640 8.90114 9.49688 10.98824 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.005229 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.694795 B = 5353.294116 C = 7716.062514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.052 3.948 4 C -0.066 4.066 5 H 0.083 0.917 6 C -0.145 4.145 7 C -0.108 4.108 8 H 0.097 0.903 9 C -0.142 4.142 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.698 5.698 13 C 0.184 3.816 14 H 0.086 0.914 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.070 4.070 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.400 0.600 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.262 0.738 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -14.083 2.233 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.024 4.024 4 C -0.085 4.085 5 H 0.102 0.898 6 C -0.202 4.202 7 C -0.129 4.129 8 H 0.115 0.885 9 C -0.200 4.200 10 C 0.298 3.702 11 O -0.424 6.424 12 N -0.347 5.347 13 C 0.079 3.921 14 H 0.104 0.896 15 C -0.013 4.013 16 C -0.559 4.559 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.071 4.071 25 C -0.125 4.125 26 C -0.143 4.143 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.127 4.127 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.235 0.765 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.133 0.867 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.683 -14.449 1.689 15.006 hybrid contribution -0.610 1.062 0.976 1.566 sum 3.073 -13.387 2.664 13.991 Atomic orbital electron populations 1.22663 0.81582 1.02064 0.99961 1.87779 1.19207 1.28697 1.95509 1.22971 0.93366 0.84437 1.01609 1.20821 0.93475 0.94857 0.99304 0.89837 1.21863 1.00887 1.01098 0.96392 1.21327 0.97570 0.97052 0.96994 0.88494 1.21792 0.92768 1.02665 1.02765 1.20502 0.80560 0.81700 0.87409 1.90602 1.36452 1.62855 1.52509 1.46005 1.49576 1.15971 1.23114 1.20235 0.95864 0.96293 0.79668 0.89629 1.19384 0.98012 0.85655 0.98272 1.21080 1.21349 0.92140 1.21323 0.92513 1.24978 0.95870 0.96852 0.96360 1.69945 1.39413 1.01941 1.41703 0.86671 0.81868 0.77533 0.82021 1.20260 1.21274 1.20241 1.20542 0.94593 0.96305 0.95674 1.20891 0.93199 0.99635 0.98824 1.21035 0.99215 1.00508 0.93559 1.20991 0.95199 1.02030 0.97105 1.21038 0.93813 1.00560 0.98662 1.21013 0.99852 0.98982 0.92841 0.94035 0.90130 0.94516 0.89874 0.94420 0.91923 0.92436 0.92942 0.91815 0.91319 0.92069 0.76496 0.95759 0.94832 0.92792 0.86608 0.86770 0.86874 0.86653 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.78 10.24 -35.23 -0.36 -6.14 16 3 C 0.05 0.77 5.05 37.16 0.19 0.96 16 4 C -0.07 -0.87 1.85 -90.62 -0.17 -1.04 16 5 H 0.08 1.23 8.10 -51.92 -0.42 0.81 16 6 C -0.15 -1.56 8.74 37.16 0.32 -1.24 16 7 C -0.11 -1.40 2.32 -91.78 -0.21 -1.61 16 8 H 0.10 1.18 8.14 -51.92 -0.42 0.75 16 9 C -0.14 -1.51 8.74 37.16 0.32 -1.18 16 10 C 0.51 8.63 6.79 -10.99 -0.07 8.55 16 11 O -0.55 -10.88 13.33 5.56 0.07 -10.81 16 12 N -0.70 -12.11 3.93 -54.93 -0.22 -12.33 16 13 C 0.18 3.66 2.11 -69.08 -0.15 3.52 16 14 H 0.09 1.88 7.44 -51.93 -0.39 1.49 16 15 C 0.02 0.57 4.49 -27.88 -0.13 0.44 16 16 C -0.52 -13.53 8.84 -34.44 -0.30 -13.84 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 20 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.07 -1.28 4.91 -104.62 -0.51 -1.80 16 25 C -0.11 -1.77 9.32 -39.59 -0.37 -2.14 16 26 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 27 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 28 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 29 C -0.11 -1.88 9.67 -39.58 -0.38 -2.27 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.44 5.41 -51.93 -0.28 1.16 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.70 7.82 -51.93 -0.41 0.30 16 36 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.06 0.64 7.56 -51.93 -0.39 0.24 16 39 H 0.07 0.60 6.43 -51.93 -0.33 0.27 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 6.41 8.02 -40.82 -0.33 6.08 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 1.78 7.73 -52.49 -0.41 1.37 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 48 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 49 H 0.12 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 397.58 15.07 5.99 5.99 Total: -1.00 -30.54 397.58 -8.76 -39.30 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.32 Total: 8.15 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.64 Total: -15.37 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.52 Total: -36.87 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.29 Total: -16.95 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.54 -8.76 -39.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360379347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.348 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds