Wall clock time and date at job start Tue Mar 31 2020 13:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00070 * 4 3 2 6 6 C 1.53001 * 109.47242 * 295.00540 * 4 3 2 7 7 C 1.52994 * 109.47404 * 174.99993 * 4 3 2 8 8 H 1.09008 * 109.46970 * 60.00049 * 7 4 3 9 9 C 1.52997 * 109.47404 * 180.02562 * 7 4 3 10 10 C 1.50695 * 109.47383 * 300.00353 * 7 4 3 11 11 O 1.21280 * 119.99738 * 359.97438 * 10 7 4 12 12 N 1.34777 * 120.00258 * 180.02562 * 10 7 4 13 13 C 1.46504 * 120.00019 * 180.02562 * 12 10 7 14 14 H 1.08996 * 109.47156 * 34.99249 * 13 12 10 15 15 C 1.52998 * 109.47090 * 154.99822 * 13 12 10 16 16 C 1.50702 * 109.47217 * 294.99547 * 15 13 12 17 17 H 1.08003 * 119.99521 * 0.02562 * 16 15 13 18 18 C 1.37874 * 120.00108 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99818 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47101 * 60.00629 * 20 18 16 22 22 H 1.48506 * 109.46811 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46911 * 299.99950 * 20 18 16 24 24 C 1.50706 * 109.46568 * 274.99627 * 13 12 10 25 25 C 1.38234 * 120.00171 * 319.72366 * 24 13 12 26 26 C 1.38228 * 120.00003 * 179.81352 * 25 24 13 27 27 C 1.38238 * 120.00166 * 0.39984 * 26 25 24 28 28 C 1.38233 * 119.99655 * 359.85391 * 27 26 25 29 29 C 1.38232 * 120.00195 * 359.95894 * 28 27 26 30 30 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.08998 * 109.47430 * 59.99652 * 6 4 3 36 36 H 1.08996 * 109.47271 * 180.02562 * 6 4 3 37 37 H 1.09008 * 109.46731 * 299.99706 * 6 4 3 38 38 H 1.09002 * 109.47754 * 180.02562 * 9 7 4 39 39 H 1.09000 * 109.47325 * 300.00168 * 9 7 4 40 40 H 1.08995 * 109.47630 * 59.99990 * 9 7 4 41 41 H 0.97002 * 120.00154 * 359.97438 * 12 10 7 42 42 H 1.09005 * 109.47066 * 54.99734 * 15 13 12 43 43 H 1.09002 * 109.47305 * 174.99574 * 15 13 12 44 44 H 0.97002 * 120.00203 * 180.02562 * 19 18 16 45 45 H 1.07998 * 119.99782 * 0.02562 * 25 24 13 46 46 H 1.07995 * 120.00229 * 180.23175 * 26 25 24 47 47 H 1.07998 * 120.00447 * 179.84019 * 27 26 25 48 48 H 1.08008 * 120.00186 * 179.97438 * 28 27 26 49 49 H 1.08000 * 120.00198 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8428 6 6 3.9963 0.5363 1.3063 7 6 4.1573 2.5768 -0.1264 8 1 3.8420 3.1930 0.7158 9 6 5.6825 2.4559 -0.1276 10 6 3.7035 3.2154 -1.4137 11 8 2.9565 2.6158 -2.1576 12 7 4.1284 4.4524 -1.7388 13 6 3.6867 5.0734 -2.9900 14 1 2.6603 4.7739 -3.2017 15 6 3.7566 6.5959 -2.8562 16 6 2.7698 7.0544 -1.8136 17 1 2.1546 6.3320 -1.2977 18 6 2.6530 8.3959 -1.5176 19 7 3.4025 9.2755 -2.1454 20 14 1.4302 8.9641 -0.2247 21 1 1.7616 8.3365 1.0797 22 1 1.4980 10.4419 -0.0949 23 1 0.0588 8.5658 -0.6316 24 6 4.5828 4.6264 -4.1162 25 6 5.9458 4.5168 -3.9132 26 6 6.7672 4.1031 -4.9451 27 6 6.2267 3.8069 -6.1825 28 6 4.8644 3.9215 -6.3870 29 6 4.0425 4.3315 -5.3540 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.5533 -0.4556 1.3959 36 1 5.0829 0.4506 1.3061 37 1 3.6810 1.1524 2.1485 38 1 6.1256 3.4478 -0.2168 39 1 6.0112 1.9939 0.8033 40 1 5.9976 1.8400 -0.9699 41 1 4.7261 4.9319 -1.1440 42 1 4.7632 6.8885 -2.5573 43 1 3.5136 7.0564 -3.8138 44 1 3.3206 10.2193 -1.9369 45 1 6.3684 4.7511 -2.9474 46 1 7.8316 4.0139 -4.7855 47 1 6.8688 3.4861 -6.9895 48 1 4.4421 3.6905 -7.3539 49 1 2.9782 4.4215 -5.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360379347.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:49 Heat of formation + Delta-G solvation = -98.566382 kcal Electronic energy + Delta-G solvation = -27756.838165 eV Core-core repulsion = 24068.332808 eV Total energy + Delta-G solvation = -3688.505358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.37660 -40.03734 -38.82769 -36.98230 -36.27868 -34.73948 -32.80986 -31.71377 -31.00422 -30.38592 -28.26457 -27.05207 -26.66790 -24.82929 -23.79956 -23.37484 -22.33986 -21.20502 -20.57239 -18.75089 -18.14305 -17.66818 -17.33343 -17.00141 -16.84396 -16.46756 -16.37818 -16.10155 -15.63352 -15.30971 -14.93671 -14.60936 -14.48732 -14.18974 -14.17386 -14.04585 -13.69072 -13.53466 -13.47576 -13.14959 -12.93099 -12.85183 -12.65386 -12.53362 -12.44861 -12.36823 -12.20408 -12.09460 -11.87942 -11.67738 -11.56212 -11.52266 -11.34155 -10.79470 -10.58923 -10.33752 -9.87687 -9.74674 -9.51018 -8.20405 -6.30722 0.51797 0.56376 1.39299 1.41102 1.48730 1.77324 2.37479 2.39297 2.81492 2.98227 3.13864 3.76458 3.85675 3.93190 4.01054 4.03650 4.20931 4.22993 4.32425 4.39348 4.42657 4.46120 4.49008 4.50154 4.57325 4.66133 4.73404 4.76731 4.78084 4.78939 4.91633 4.95145 5.03932 5.11818 5.13419 5.18766 5.20495 5.30217 5.39781 5.43472 5.51746 5.61452 5.63032 5.64825 5.77665 5.92706 6.16003 6.20622 6.22850 6.75291 6.81590 7.37825 7.41938 8.90085 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007460 B = 0.005229 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3752.694795 B = 5353.294116 C = 7716.062514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.053 3.947 4 C -0.062 4.062 5 H 0.063 0.937 6 C -0.137 4.137 7 C -0.099 4.099 8 H 0.112 0.888 9 C -0.138 4.138 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.695 5.695 13 C 0.200 3.800 14 H 0.054 0.946 15 C 0.038 3.962 16 C -0.529 4.529 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.954 3.046 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.277 1.277 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.135 4.135 30 H 0.031 0.969 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.407 0.593 42 H 0.013 0.987 43 H 0.000 1.000 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.147 0.853 47 H 0.150 0.850 48 H 0.141 0.859 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -15.280 3.511 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.023 4.023 4 C -0.082 4.082 5 H 0.081 0.919 6 C -0.194 4.194 7 C -0.120 4.120 8 H 0.130 0.870 9 C -0.195 4.195 10 C 0.296 3.704 11 O -0.461 6.461 12 N -0.344 5.344 13 C 0.095 3.905 14 H 0.072 0.928 15 C 0.001 3.999 16 C -0.567 4.567 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.779 3.221 21 H -0.188 1.188 22 H -0.209 1.209 23 H -0.203 1.203 24 C -0.097 4.097 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.154 4.154 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.243 0.757 42 H 0.031 0.969 43 H 0.019 0.981 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.165 0.835 47 H 0.168 0.832 48 H 0.159 0.841 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.237 -15.657 2.984 16.777 hybrid contribution -1.122 1.395 0.478 1.853 sum 4.115 -14.262 3.462 15.242 Atomic orbital electron populations 1.22864 0.80228 1.03685 1.00105 1.87756 1.20811 1.28581 1.95526 1.22906 0.94613 0.84413 1.00378 1.20808 0.92399 0.94784 1.00162 0.91869 1.21805 1.02112 1.00605 0.94869 1.21363 0.99385 0.96644 0.94652 0.87025 1.21812 0.90451 1.03313 1.03961 1.21271 0.79631 0.81062 0.88436 1.90596 1.37923 1.63571 1.54053 1.45903 1.49702 1.16353 1.22429 1.19680 0.95090 0.93862 0.81855 0.92765 1.19124 0.96639 0.88255 0.95888 1.21348 1.21492 0.92321 1.21521 0.92850 1.25761 0.97550 0.96996 0.98350 1.70062 1.41023 1.02206 1.43237 0.85671 0.79339 0.77120 0.79936 1.18821 1.20917 1.20258 1.20448 0.95399 0.98517 0.95383 1.21064 0.92547 1.00030 1.00065 1.21444 1.00658 0.99006 0.93051 1.21462 0.95085 1.00305 0.97936 1.21368 0.94370 0.99564 0.98964 1.21159 1.00044 1.00518 0.93652 0.95010 0.87834 0.93241 0.93231 0.93426 0.92428 0.90397 0.91827 0.91143 0.88551 0.92732 0.75661 0.96884 0.98146 0.92731 0.85916 0.83497 0.83190 0.84082 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.41 -11.93 10.24 -148.98 -1.53 -13.46 16 3 C 0.05 1.58 5.05 71.98 0.36 1.94 16 4 C -0.06 -1.61 1.85 -10.80 -0.02 -1.63 16 5 H 0.06 1.88 8.10 -2.38 -0.02 1.86 16 6 C -0.14 -2.60 8.74 71.98 0.63 -1.97 16 7 C -0.10 -2.47 2.32 -11.54 -0.03 -2.50 16 8 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 9 C -0.14 -2.60 8.74 71.98 0.63 -1.98 16 10 C 0.51 17.54 6.79 87.66 0.60 18.14 16 11 O -0.58 -24.41 13.33 -3.03 -0.04 -24.45 16 12 N -0.69 -24.88 3.93 -446.09 -1.75 -26.63 16 13 C 0.20 8.48 2.11 44.25 0.09 8.58 16 14 H 0.05 2.59 7.44 -2.39 -0.02 2.58 16 15 C 0.04 1.91 4.49 29.85 0.13 2.05 16 16 C -0.53 -28.38 8.84 25.60 0.23 -28.15 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -53.63 13.29 21.45 0.28 -53.34 16 20 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 24 C -0.10 -3.68 4.91 -19.86 -0.10 -3.77 16 25 C -0.12 -3.90 9.32 22.27 0.21 -3.69 16 26 C -0.12 -3.36 10.05 22.27 0.22 -3.13 16 27 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 28 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 29 C -0.14 -4.90 9.67 22.27 0.22 -4.68 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.81 5.41 -2.39 -0.01 1.80 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 36 H 0.08 1.16 6.43 -2.39 -0.02 1.15 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 39 H 0.10 1.31 6.43 -2.39 -0.02 1.30 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.41 13.19 8.02 -92.71 -0.74 12.45 16 42 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.12 3.72 7.73 -2.91 -0.02 3.70 16 46 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 49 H 0.11 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -69.01 397.58 4.50 -64.51 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.18 Total: 32.84 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 5.33 Total: -24.33 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.47 Total: -79.98 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.57 Total: -37.91 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.01 4.50 -64.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360379347.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.052 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds