Wall clock time and date at job start Tue Mar 31 2020 12:27:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42897 * 113.99803 * 2 1
4 4 H 1.09004 * 109.47485 * 20.98076 * 3 2 1
5 5 C 1.53006 * 109.46825 * 140.97660 * 3 2 1
6 6 H 1.08998 * 109.46998 * 60.00332 * 5 3 2
7 7 C 1.52991 * 109.47320 * 300.00326 * 5 3 2
8 8 N 1.46900 * 109.46963 * 179.97438 * 5 3 2
9 9 C 1.46900 * 110.99968 * 203.02245 * 8 5 3
10 10 H 1.08994 * 109.47264 * 326.93918 * 9 8 5
11 11 C 1.52998 * 109.47362 * 206.93956 * 9 8 5
12 12 C 1.50697 * 109.47090 * 86.93950 * 9 8 5
13 13 C 1.38305 * 119.93320 * 39.72725 * 12 9 8
14 14 C 1.38096 * 120.06924 * 179.72667 * 13 12 9
15 15 C 1.38874 * 119.93008 * 0.54709 * 14 13 12
16 16 O 1.35754 * 120.06987 * 179.75084 * 15 14 13
17 17 C 1.34827 * 117.00386 * 185.05987 * 16 15 14
18 18 H 1.08004 * 119.99606 * 5.14300 * 17 16 15
19 19 C 1.38647 * 120.00297 * 185.14785 * 17 16 15
20 20 N 1.31564 * 119.99929 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00289 * 179.97438 * 19 17 16
22 22 H 1.48492 * 109.47382 * 89.99790 * 21 19 17
23 23 H 1.48505 * 109.47288 * 210.00349 * 21 19 17
24 24 H 1.48501 * 109.46864 * 329.99983 * 21 19 17
25 25 C 1.38875 * 119.86537 * 359.72542 * 15 14 13
26 26 C 1.38098 * 119.92974 * 359.97438 * 25 15 14
27 27 C 1.53001 * 109.47388 * 260.97939 * 3 2 1
28 28 C 1.53002 * 117.49992 * 132.70453 * 27 3 2
29 29 C 1.52995 * 117.49857 * 64.04318 * 27 3 2
30 30 H 1.09001 * 109.47410 * 179.72468 * 1 2 3
31 31 H 1.09002 * 109.47053 * 299.72601 * 1 2 3
32 32 H 1.09002 * 109.47034 * 59.72162 * 1 2 3
33 33 H 1.09000 * 109.47576 * 64.98504 * 7 5 3
34 34 H 1.09000 * 109.47619 * 184.99247 * 7 5 3
35 35 H 1.09001 * 109.47145 * 304.98861 * 7 5 3
36 36 H 1.00906 * 110.99820 * 79.07340 * 8 5 3
37 37 H 1.09012 * 109.46947 * 304.95999 * 11 9 8
38 38 H 1.08995 * 109.47307 * 64.95483 * 11 9 8
39 39 H 1.08999 * 109.47180 * 184.96036 * 11 9 8
40 40 H 1.08007 * 119.96294 * 359.97438 * 13 12 9
41 41 H 1.07998 * 120.03234 * 180.26691 * 14 13 12
42 42 H 0.97002 * 120.00082 * 180.02562 * 20 19 17
43 43 H 1.07999 * 120.03763 * 179.97438 * 25 15 14
44 44 H 1.08003 * 119.96933 * 180.02562 * 26 25 15
45 45 H 1.09001 * 115.54777 * 278.37159 * 27 3 2
46 46 H 1.09001 * 117.49476 * 0.02562 * 28 27 3
47 47 H 1.09000 * 117.49560 * 145.01498 * 28 27 3
48 48 H 1.08998 * 117.49840 * 214.97994 * 29 27 3
49 49 H 1.09004 * 117.49963 * 0.02562 * 29 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.2814 2.0277 0.3680
5 6 3.2414 1.3155 0.9083
6 1 3.9702 0.5934 0.5404
7 6 2.8274 0.9415 2.3328
8 7 3.8393 2.6574 0.9078
9 6 5.2577 2.6019 1.2859
10 1 5.4112 1.7961 2.0036
11 6 5.6696 3.9330 1.9179
12 6 6.0950 2.3479 0.0590
13 6 5.7757 2.9686 -1.1350
14 6 6.5444 2.7423 -2.2597
15 6 7.6323 1.8817 -2.1938
16 8 8.3869 1.6532 -3.2989
17 6 9.3625 0.7286 -3.1936
18 1 9.4618 0.1491 -2.2876
19 6 10.2384 0.5217 -4.2483
20 7 10.1172 1.2273 -5.3521
21 14 11.5905 -0.7589 -4.1022
22 1 11.0869 -2.0682 -4.5889
23 1 12.7576 -0.3421 -4.9205
24 1 12.0020 -0.8842 -2.6809
25 6 7.9471 1.2555 -0.9948
26 6 7.1782 1.4907 0.1280
27 6 2.4243 1.6794 -1.4246
28 6 2.0246 3.0651 -1.9358
29 6 1.3151 1.8180 -2.4693
30 1 -0.3634 -1.0276 -0.0049
31 1 -0.3633 0.5096 0.8924
32 1 -0.3633 0.5182 -0.8875
33 1 2.4659 -0.0867 2.3482
34 1 3.6864 1.0346 2.9973
35 1 2.0346 1.6103 2.6682
36 1 3.3277 3.2813 1.5138
37 1 5.4343 4.7483 1.2336
38 1 5.1268 4.0749 2.8523
39 1 6.7410 3.9241 2.1178
40 1 4.9266 3.6341 -1.1869
41 1 6.2971 3.2307 -3.1907
42 1 10.7297 1.0823 -6.0902
43 1 8.7922 0.5853 -0.9405
44 1 7.4226 1.0044 1.0608
45 1 3.3813 1.2772 -1.7569
46 1 1.4670 3.7104 -1.2569
47 1 2.7185 3.5742 -2.6046
48 1 1.5425 1.5073 -3.4890
49 1 0.2903 1.6432 -2.1416
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000388309511.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:56
Heat of formation + Delta-G solvation = -23.965201 kcal
Electronic energy + Delta-G solvation = -27619.328829 eV
Core-core repulsion = 23934.058421 eV
Total energy + Delta-G solvation = -3685.270408 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-39.56298 -38.87105 -37.41624 -35.96058 -35.69040 -32.73132 -32.03190 -30.06914
-28.50959 -27.78604 -27.68604 -25.69433 -25.33017 -22.61238 -22.21263 -21.83975
-21.26287 -20.47012 -19.83597 -17.86423 -16.94811 -16.67424 -16.19876 -15.50525
-15.31094 -14.89887 -14.60388 -14.43010 -14.36019 -14.08554 -13.60729 -13.50594
-13.39992 -12.99046 -12.92157 -12.67405 -12.49562 -12.26903 -12.13085 -11.91156
-11.63141 -11.57296 -11.39582 -11.36132 -11.31930 -11.10780 -10.80742 -10.65193
-10.52098 -10.46041 -10.29760 -10.19837 -9.95037 -9.49327 -9.27091 -8.75900
-8.29554 -8.03098 -7.05740 -6.39160 -3.97616 2.34568 2.45010 3.16302
3.16685 3.21389 3.41875 4.01659 4.04962 4.41474 4.64676 4.68198
4.83589 5.00784 5.11349 5.13484 5.16344 5.20613 5.22128 5.25576
5.29822 5.39010 5.41955 5.46164 5.48389 5.51507 5.67380 5.75509
5.77549 5.80475 5.86918 5.96387 6.02193 6.03652 6.05300 6.12217
6.23810 6.30015 6.36297 6.46025 6.53611 6.86441 6.94278 7.07740
7.16694 7.20288 7.35251 7.51638 7.54943 7.61586 7.96351 8.06552
9.06991 9.79339 10.79249
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.014497 B = 0.003279 C = 0.003055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1930.933641 B = 8537.587282 C = 9164.239418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.379 6.379
3 C 0.133 3.867
4 H 0.056 0.944
5 C 0.090 3.910
6 H 0.090 0.910
7 C -0.178 4.178
8 N -0.667 5.667
9 C 0.144 3.856
10 H 0.043 0.957
11 C -0.148 4.148
12 C -0.173 4.173
13 C -0.038 4.038
14 C -0.201 4.201
15 C 0.155 3.845
16 O -0.181 6.181
17 C -0.389 4.389
18 H 0.090 0.910
19 C 0.038 3.962
20 N -0.865 5.865
21 Si 0.939 3.061
22 H -0.274 1.274
23 H -0.278 1.278
24 H -0.268 1.268
25 C -0.236 4.236
26 C -0.071 4.071
27 C -0.141 4.141
28 C -0.158 4.158
29 C -0.192 4.192
30 H 0.082 0.918
31 H 0.036 0.964
32 H 0.042 0.958
33 H 0.065 0.935
34 H 0.054 0.946
35 H 0.050 0.950
36 H 0.334 0.666
37 H 0.064 0.936
38 H 0.046 0.954
39 H 0.063 0.937
40 H 0.119 0.881
41 H 0.112 0.888
42 H 0.269 0.731
43 H 0.123 0.877
44 H 0.100 0.900
45 H 0.111 0.889
46 H 0.087 0.913
47 H 0.095 0.905
48 H 0.092 0.908
49 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.107 2.092 13.852 22.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.297 6.297
3 C 0.075 3.925
4 H 0.074 0.926
5 C -0.020 4.020
6 H 0.108 0.892
7 C -0.237 4.237
8 N -0.298 5.298
9 C 0.035 3.965
10 H 0.061 0.939
11 C -0.206 4.206
12 C -0.175 4.175
13 C -0.056 4.056
14 C -0.220 4.220
15 C 0.101 3.899
16 O -0.085 6.085
17 C -0.466 4.466
18 H 0.108 0.892
19 C -0.166 4.166
20 N -0.500 5.500
21 Si 0.764 3.236
22 H -0.199 1.199
23 H -0.203 1.203
24 H -0.193 1.193
25 C -0.256 4.256
26 C -0.090 4.090
27 C -0.159 4.159
28 C -0.195 4.195
29 C -0.229 4.229
30 H 0.101 0.899
31 H 0.054 0.946
32 H 0.061 0.939
33 H 0.085 0.915
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.153 0.847
37 H 0.083 0.917
38 H 0.065 0.935
39 H 0.082 0.918
40 H 0.137 0.863
41 H 0.130 0.870
42 H 0.079 0.921
43 H 0.141 0.859
44 H 0.119 0.881
45 H 0.129 0.871
46 H 0.105 0.895
47 H 0.113 0.887
48 H 0.110 0.890
49 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -16.745 2.032 12.720 21.126
hybrid contribution 0.492 -0.705 0.998 1.317
sum -16.253 1.327 13.718 21.310
Atomic orbital electron populations
1.22847 0.81647 1.02454 0.99633 1.87899 1.19007 1.27882 1.94902
1.21553 0.93977 0.83796 0.93154 0.92612 1.21486 0.95730 0.91670
0.93102 0.89191 1.22444 1.01077 1.02591 0.97632 1.60311 1.02452
1.08996 1.58086 1.20129 0.86391 0.96494 0.93492 0.93912 1.21968
1.01766 0.97422 0.99435 1.19122 0.99128 1.04216 0.95013 1.20433
0.96833 0.97323 0.91011 1.20251 0.97651 1.04730 0.99409 1.19424
0.90943 0.92601 0.86909 1.83989 1.41150 1.53420 1.29929 1.21291
1.08235 1.13960 1.03094 0.89244 1.25260 0.98122 0.98429 0.94743
1.70043 1.36883 1.38829 1.04261 0.85744 0.79534 0.79671 0.78666
1.19930 1.20312 1.19266 1.21074 1.04065 1.07269 0.93148 1.20575
0.94710 0.96832 0.96893 1.22476 0.99460 1.00250 0.93743 1.22792
1.03030 0.90485 1.03192 1.22978 0.97028 1.03615 0.99314 0.89937
0.94566 0.93904 0.91546 0.92679 0.93139 0.84739 0.91699 0.93518
0.91813 0.86301 0.87003 0.92138 0.85901 0.88145 0.87111 0.89460
0.88670 0.88998 0.89662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 10.69 101.05 1.08 1.35 16
2 O -0.38 -4.57 9.73 -35.23 -0.34 -4.91 16
3 C 0.13 1.51 2.12 -26.73 -0.06 1.45 16
4 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16
5 C 0.09 1.04 2.20 -67.71 -0.15 0.89 16
6 H 0.09 1.31 7.73 -51.93 -0.40 0.90 16
7 C -0.18 -1.73 8.95 37.15 0.33 -1.40 16
8 N -0.67 -7.31 4.87 -100.96 -0.49 -7.80 16
9 C 0.14 1.80 2.61 -68.87 -0.18 1.62 16
10 H 0.04 0.54 6.81 -51.93 -0.35 0.18 16
11 C -0.15 -1.62 9.13 37.16 0.34 -1.28 16
12 C -0.17 -2.86 4.71 -104.57 -0.49 -3.35 16
13 C -0.04 -0.66 9.32 -39.61 -0.37 -1.03 16
14 C -0.20 -4.29 9.99 -39.40 -0.39 -4.69 16
15 C 0.15 3.79 6.65 -39.11 -0.26 3.53 16
16 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16
17 C -0.39 -11.10 9.45 30.88 0.29 -10.80 16
18 H 0.09 2.37 5.28 -52.48 -0.28 2.10 16
19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
20 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16
21 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16
22 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16
23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
25 C -0.24 -5.22 9.14 -39.40 -0.36 -5.58 16
26 C -0.07 -1.31 9.66 -39.61 -0.38 -1.69 16
27 C -0.14 -1.78 4.96 -90.62 -0.45 -2.23 16
28 C -0.16 -1.77 10.18 -26.69 -0.27 -2.04 16
29 C -0.19 -2.18 10.01 -26.69 -0.27 -2.45 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16
32 H 0.04 0.35 5.85 -51.93 -0.30 0.05 16
33 H 0.07 0.68 7.83 -51.93 -0.41 0.27 16
34 H 0.05 0.52 7.25 -51.93 -0.38 0.15 16
35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.33 3.08 8.11 -39.29 -0.32 2.76 16
37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16
38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.12 1.88 7.70 -52.48 -0.40 1.48 16
41 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16
42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
43 H 0.12 2.76 5.70 -52.49 -0.30 2.46 16
44 H 0.10 1.60 8.03 -52.48 -0.42 1.18 16
45 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16
46 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16
47 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16
48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16
49 H 0.09 0.85 6.00 -51.93 -0.31 0.54 16
LS Contribution 395.63 15.07 5.96 5.96
Total: -1.00 -30.55 395.63 -8.86 -39.41
By element:
Atomic # 1 Polarization: 16.52 SS G_CDS: -8.04 Total: 8.47 kcal
Atomic # 6 Polarization: -25.05 SS G_CDS: -1.68 Total: -26.73 kcal
Atomic # 7 Polarization: -33.10 SS G_CDS: 0.27 Total: -32.83 kcal
Atomic # 8 Polarization: -9.84 SS G_CDS: -0.34 Total: -10.18 kcal
Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -30.55 -8.86 -39.41 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388309511.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.449 kcal
(2) G-P(sol) polarization free energy of solvation -30.551 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds