Wall clock time and date at job start Tue Mar 31 2020 12:27:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42897 * 113.99803 * 2 1
4 4 H 1.09004 * 109.47485 * 20.98076 * 3 2 1
5 5 C 1.53006 * 109.46825 * 140.97660 * 3 2 1
6 6 H 1.08998 * 109.46998 * 60.00332 * 5 3 2
7 7 C 1.52991 * 109.47320 * 300.00326 * 5 3 2
8 8 N 1.46900 * 109.46963 * 179.97438 * 5 3 2
9 9 C 1.46900 * 110.99968 * 203.02245 * 8 5 3
10 10 H 1.08994 * 109.47264 * 326.93918 * 9 8 5
11 11 C 1.52998 * 109.47362 * 206.93956 * 9 8 5
12 12 C 1.50697 * 109.47090 * 86.93950 * 9 8 5
13 13 C 1.38305 * 119.93320 * 39.72725 * 12 9 8
14 14 C 1.38096 * 120.06924 * 179.72667 * 13 12 9
15 15 C 1.38874 * 119.93008 * 0.54709 * 14 13 12
16 16 O 1.35754 * 120.06987 * 179.75084 * 15 14 13
17 17 C 1.34827 * 117.00386 * 185.05987 * 16 15 14
18 18 H 1.08004 * 119.99606 * 5.14300 * 17 16 15
19 19 C 1.38647 * 120.00297 * 185.14785 * 17 16 15
20 20 N 1.31564 * 119.99929 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00289 * 179.97438 * 19 17 16
22 22 H 1.48492 * 109.47382 * 89.99790 * 21 19 17
23 23 H 1.48505 * 109.47288 * 210.00349 * 21 19 17
24 24 H 1.48501 * 109.46864 * 329.99983 * 21 19 17
25 25 C 1.38875 * 119.86537 * 359.72542 * 15 14 13
26 26 C 1.38098 * 119.92974 * 359.97438 * 25 15 14
27 27 C 1.53001 * 109.47388 * 260.97939 * 3 2 1
28 28 C 1.53002 * 117.49992 * 132.70453 * 27 3 2
29 29 C 1.52995 * 117.49857 * 64.04318 * 27 3 2
30 30 H 1.09001 * 109.47410 * 179.72468 * 1 2 3
31 31 H 1.09002 * 109.47053 * 299.72601 * 1 2 3
32 32 H 1.09002 * 109.47034 * 59.72162 * 1 2 3
33 33 H 1.09000 * 109.47576 * 64.98504 * 7 5 3
34 34 H 1.09000 * 109.47619 * 184.99247 * 7 5 3
35 35 H 1.09001 * 109.47145 * 304.98861 * 7 5 3
36 36 H 1.00906 * 110.99820 * 79.07340 * 8 5 3
37 37 H 1.09012 * 109.46947 * 304.95999 * 11 9 8
38 38 H 1.08995 * 109.47307 * 64.95483 * 11 9 8
39 39 H 1.08999 * 109.47180 * 184.96036 * 11 9 8
40 40 H 1.08007 * 119.96294 * 359.97438 * 13 12 9
41 41 H 1.07998 * 120.03234 * 180.26691 * 14 13 12
42 42 H 0.97002 * 120.00082 * 180.02562 * 20 19 17
43 43 H 1.07999 * 120.03763 * 179.97438 * 25 15 14
44 44 H 1.08003 * 119.96933 * 180.02562 * 26 25 15
45 45 H 1.09001 * 115.54777 * 278.37159 * 27 3 2
46 46 H 1.09001 * 117.49476 * 0.02562 * 28 27 3
47 47 H 1.09000 * 117.49560 * 145.01498 * 28 27 3
48 48 H 1.08998 * 117.49840 * 214.97994 * 29 27 3
49 49 H 1.09004 * 117.49963 * 0.02562 * 29 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.2814 2.0277 0.3680
5 6 3.2414 1.3155 0.9083
6 1 3.9702 0.5934 0.5404
7 6 2.8274 0.9415 2.3328
8 7 3.8393 2.6574 0.9078
9 6 5.2577 2.6019 1.2859
10 1 5.4112 1.7961 2.0036
11 6 5.6696 3.9330 1.9179
12 6 6.0950 2.3479 0.0590
13 6 5.7757 2.9686 -1.1350
14 6 6.5444 2.7423 -2.2597
15 6 7.6323 1.8817 -2.1938
16 8 8.3869 1.6532 -3.2989
17 6 9.3625 0.7286 -3.1936
18 1 9.4618 0.1491 -2.2876
19 6 10.2384 0.5217 -4.2483
20 7 10.1172 1.2273 -5.3521
21 14 11.5905 -0.7589 -4.1022
22 1 11.0869 -2.0682 -4.5889
23 1 12.7576 -0.3421 -4.9205
24 1 12.0020 -0.8842 -2.6809
25 6 7.9471 1.2555 -0.9948
26 6 7.1782 1.4907 0.1280
27 6 2.4243 1.6794 -1.4246
28 6 2.0246 3.0651 -1.9358
29 6 1.3151 1.8180 -2.4693
30 1 -0.3634 -1.0276 -0.0049
31 1 -0.3633 0.5096 0.8924
32 1 -0.3633 0.5182 -0.8875
33 1 2.4659 -0.0867 2.3482
34 1 3.6864 1.0346 2.9973
35 1 2.0346 1.6103 2.6682
36 1 3.3277 3.2813 1.5138
37 1 5.4343 4.7483 1.2336
38 1 5.1268 4.0749 2.8523
39 1 6.7410 3.9241 2.1178
40 1 4.9266 3.6341 -1.1869
41 1 6.2971 3.2307 -3.1907
42 1 10.7297 1.0823 -6.0902
43 1 8.7922 0.5853 -0.9405
44 1 7.4226 1.0044 1.0608
45 1 3.3813 1.2772 -1.7569
46 1 1.4670 3.7104 -1.2569
47 1 2.7185 3.5742 -2.6046
48 1 1.5425 1.5073 -3.4890
49 1 0.2903 1.6432 -2.1416
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388309511.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:55
Heat of formation + Delta-G solvation = -42.311683 kcal
Electronic energy + Delta-G solvation = -27620.124392 eV
Core-core repulsion = 23934.058421 eV
Total energy + Delta-G solvation = -3686.065971 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.89168 -40.18611 -38.83334 -37.05735 -36.85934 -34.36075 -33.52471 -31.73141
-29.86564 -28.82628 -28.47815 -27.34438 -26.46769 -23.98435 -23.48732 -23.15608
-22.23131 -21.45179 -21.23879 -19.74178 -18.77585 -17.64379 -17.11786 -16.73037
-16.43232 -16.21588 -15.96973 -15.67678 -15.65138 -15.44406 -15.14451 -15.01886
-14.42253 -14.34214 -14.03396 -13.83966 -13.72159 -13.64439 -13.46698 -13.04567
-12.92587 -12.71625 -12.53576 -12.42020 -12.32509 -12.23649 -12.16437 -12.12385
-11.98314 -11.77207 -11.64111 -11.16390 -11.14015 -10.87858 -10.76731 -10.34430
-9.68624 -9.21877 -8.81596 -8.46427 -6.14096 0.68051 0.79642 1.33257
1.43218 1.50919 2.17817 2.58213 2.85958 3.11134 3.22694 3.53622
3.57685 3.79001 3.94777 4.10187 4.14927 4.16657 4.25415 4.30274
4.31807 4.42179 4.45829 4.49084 4.51486 4.55287 4.61052 4.69708
4.78700 4.81141 4.82395 4.94002 4.96071 5.00426 5.08259 5.10398
5.14876 5.19725 5.20963 5.30830 5.33240 5.37559 5.42563 5.44445
5.68751 5.76821 5.82407 6.05187 6.24261 6.32121 6.40669 6.72352
6.98604 7.82042 8.77325
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.014497 B = 0.003279 C = 0.003055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1930.933641 B = 8537.587282 C = 9164.239418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.403 6.403
3 C 0.140 3.860
4 H 0.078 0.922
5 C 0.094 3.906
6 H 0.053 0.947
7 C -0.170 4.170
8 N -0.666 5.666
9 C 0.148 3.852
10 H 0.053 0.947
11 C -0.144 4.144
12 C -0.145 4.145
13 C -0.026 4.026
14 C -0.212 4.212
15 C 0.111 3.889
16 O -0.237 6.237
17 C -0.412 4.412
18 H 0.098 0.902
19 C -0.024 4.024
20 N -0.922 5.922
21 Si 1.018 2.982
22 H -0.264 1.264
23 H -0.269 1.269
24 H -0.253 1.253
25 C -0.246 4.246
26 C -0.073 4.073
27 C -0.154 4.154
28 C -0.147 4.147
29 C -0.190 4.190
30 H 0.090 0.910
31 H 0.054 0.946
32 H 0.047 0.953
33 H 0.057 0.943
34 H 0.059 0.941
35 H 0.070 0.930
36 H 0.354 0.646
37 H 0.062 0.938
38 H 0.078 0.922
39 H 0.056 0.944
40 H 0.145 0.855
41 H 0.104 0.896
42 H 0.272 0.728
43 H 0.112 0.888
44 H 0.133 0.867
45 H 0.069 0.931
46 H 0.111 0.889
47 H 0.083 0.917
48 H 0.079 0.921
49 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.333 2.494 17.606 26.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.322 6.322
3 C 0.082 3.918
4 H 0.096 0.904
5 C -0.016 4.016
6 H 0.071 0.929
7 C -0.229 4.229
8 N -0.299 5.299
9 C 0.038 3.962
10 H 0.071 0.929
11 C -0.201 4.201
12 C -0.146 4.146
13 C -0.044 4.044
14 C -0.231 4.231
15 C 0.061 3.939
16 O -0.144 6.144
17 C -0.488 4.488
18 H 0.115 0.885
19 C -0.221 4.221
20 N -0.561 5.561
21 Si 0.837 3.163
22 H -0.189 1.189
23 H -0.194 1.194
24 H -0.177 1.177
25 C -0.265 4.265
26 C -0.091 4.091
27 C -0.173 4.173
28 C -0.184 4.184
29 C -0.227 4.227
30 H 0.109 0.891
31 H 0.073 0.927
32 H 0.065 0.935
33 H 0.077 0.923
34 H 0.078 0.922
35 H 0.089 0.911
36 H 0.175 0.825
37 H 0.081 0.919
38 H 0.097 0.903
39 H 0.075 0.925
40 H 0.162 0.838
41 H 0.122 0.878
42 H 0.081 0.919
43 H 0.130 0.870
44 H 0.151 0.849
45 H 0.087 0.913
46 H 0.129 0.871
47 H 0.101 0.899
48 H 0.098 0.902
49 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -19.025 2.451 16.530 25.322
hybrid contribution 0.882 -0.743 0.027 1.153
sum -18.143 1.708 16.557 24.622
Atomic orbital electron populations
1.23032 0.79972 1.03465 1.00685 1.87879 1.20957 1.28398 1.94957
1.21492 0.94296 0.84139 0.91871 0.90404 1.21377 0.94990 0.90891
0.94379 0.92857 1.22348 1.01859 1.02589 0.96070 1.60127 1.01716
1.09242 1.58842 1.20096 0.86684 0.98193 0.91198 0.92880 1.21920
1.01795 0.95695 1.00713 1.19728 0.97846 1.00748 0.96269 1.20680
0.96466 0.97122 0.90135 1.20480 0.97542 1.04438 1.00631 1.19932
0.91970 0.94756 0.87194 1.83942 1.42871 1.55150 1.32402 1.21769
1.08603 1.14599 1.03812 0.88498 1.26574 1.00670 1.00870 0.94003
1.70192 1.38774 1.41623 1.05506 0.84608 0.75830 0.76458 0.79437
1.18894 1.19408 1.17687 1.21156 1.04555 1.07148 0.93659 1.20935
0.94435 0.96935 0.96842 1.22362 0.98180 1.01496 0.95249 1.22822
1.02563 0.90090 1.02929 1.23025 0.97638 1.03597 0.98454 0.89137
0.92740 0.93487 0.92346 0.92229 0.91063 0.82547 0.91862 0.90338
0.92506 0.83771 0.87796 0.91904 0.86977 0.84908 0.91270 0.87117
0.89872 0.90212 0.87723
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.36 10.69 113.37 1.21 1.57 16
2 O -0.40 -8.97 9.73 -148.98 -1.45 -10.42 16
3 C 0.14 2.82 2.12 30.60 0.06 2.89 16
4 H 0.08 1.24 7.49 -2.39 -0.02 1.22 16
5 C 0.09 1.92 2.20 44.91 0.10 2.01 16
6 H 0.05 1.49 7.73 -2.39 -0.02 1.47 16
7 C -0.17 -2.66 8.95 71.98 0.64 -2.02 16
8 N -0.67 -12.15 4.87 -473.33 -2.30 -14.45 16
9 C 0.15 3.16 2.61 44.17 0.12 3.28 16
10 H 0.05 1.10 6.81 -2.39 -0.02 1.09 16
11 C -0.14 -2.50 9.13 71.98 0.66 -1.85 16
12 C -0.14 -4.53 4.71 -19.83 -0.09 -4.62 16
13 C -0.03 -0.90 9.32 22.25 0.21 -0.69 16
14 C -0.21 -9.49 9.99 22.39 0.22 -9.26 16
15 C 0.11 5.81 6.65 22.57 0.15 5.96 16
16 O -0.24 -14.88 9.76 -22.76 -0.22 -15.10 16
17 C -0.41 -24.96 9.45 67.92 0.64 -24.32 16
18 H 0.10 5.45 5.28 -2.91 -0.02 5.43 16
19 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16
20 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16
21 Si 1.02 44.35 29.55 68.60 2.03 46.38 16
22 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16
23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16
24 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16
25 C -0.25 -11.26 9.14 22.39 0.20 -11.05 16
26 C -0.07 -2.62 9.66 22.25 0.21 -2.40 16
27 C -0.15 -3.76 4.96 -10.79 -0.05 -3.81 16
28 C -0.15 -3.02 10.18 30.62 0.31 -2.71 16
29 C -0.19 -4.09 10.01 30.62 0.31 -3.79 16
30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.05 0.61 8.11 -2.39 -0.02 0.59 16
32 H 0.05 0.64 5.85 -2.39 -0.01 0.63 16
33 H 0.06 1.03 7.83 -2.39 -0.02 1.01 16
34 H 0.06 0.89 7.25 -2.39 -0.02 0.87 16
35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.35 4.63 8.11 -89.69 -0.73 3.91 16
37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16
38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.14 4.30 7.70 -2.91 -0.02 4.28 16
41 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16
42 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16
43 H 0.11 5.28 5.70 -2.91 -0.02 5.26 16
44 H 0.13 3.91 8.03 -2.91 -0.02 3.88 16
45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
46 H 0.11 1.77 8.07 -2.39 -0.02 1.76 16
47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
49 H 0.10 1.84 6.00 -2.39 -0.01 1.82 16
Total: -1.00 -73.67 395.63 3.93 -69.74
By element:
Atomic # 1 Polarization: 33.44 SS G_CDS: 0.21 Total: 33.65 kcal
Atomic # 6 Polarization: -57.13 SS G_CDS: 5.37 Total: -51.76 kcal
Atomic # 7 Polarization: -70.47 SS G_CDS: -2.01 Total: -72.48 kcal
Atomic # 8 Polarization: -23.85 SS G_CDS: -1.67 Total: -25.52 kcal
Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal
Total: -73.67 3.93 -69.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388309511.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.424 kcal
(2) G-P(sol) polarization free energy of solvation -73.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.735 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds