Wall clock time and date at job start Tue Mar 31 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.53707 * 2 1 4 4 C 1.53126 * 109.50168 * 239.90404 * 2 1 3 5 5 C 1.53114 * 109.16071 * 182.40725 * 4 2 1 6 6 H 1.09010 * 109.49966 * 297.67525 * 5 4 2 7 7 O 1.42899 * 109.50471 * 177.59776 * 5 4 2 8 8 C 1.53035 * 109.28189 * 57.65474 * 5 4 2 9 9 N 1.46848 * 109.52142 * 300.82150 * 8 5 4 10 10 C 1.46906 * 111.00135 * 185.83611 * 9 8 5 11 11 C 1.50701 * 109.46898 * 293.95942 * 10 9 8 12 12 C 1.38287 * 119.97415 * 89.99673 * 11 10 9 13 13 C 1.38246 * 120.10809 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.05945 * 359.95143 * 13 12 11 15 15 C 1.38718 * 119.94292 * 0.02980 * 14 13 12 16 16 O 1.35900 * 120.05479 * 180.02562 * 15 14 13 17 17 C 1.42896 * 117.00113 * 0.02562 * 16 15 14 18 18 C 1.52995 * 109.47270 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47179 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00174 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99797 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46916 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46949 * 119.99853 * 23 21 19 26 26 H 1.48498 * 109.47122 * 239.99840 * 23 21 19 27 27 C 1.38124 * 119.96544 * 269.71682 * 11 10 9 28 28 C 1.46847 * 111.19788 * 61.74047 * 9 8 5 29 29 H 1.09001 * 109.47175 * 180.09372 * 1 2 3 30 30 H 1.09001 * 109.47183 * 300.09420 * 1 2 3 31 31 H 1.09001 * 109.47275 * 60.09378 * 1 2 3 32 32 H 1.09001 * 109.52438 * 302.31069 * 4 2 1 33 33 H 1.09004 * 109.51760 * 62.49971 * 4 2 1 34 34 H 0.96695 * 114.00106 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.45907 * 60.83499 * 8 5 4 36 36 H 1.08999 * 109.46252 * 180.82076 * 8 5 4 37 37 H 1.09000 * 109.46657 * 53.95704 * 10 9 8 38 38 H 1.08997 * 109.47009 * 173.95451 * 10 9 8 39 39 H 1.07996 * 119.94465 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.96960 * 179.97438 * 13 12 11 41 41 H 1.07996 * 120.03148 * 179.97438 * 14 13 12 42 42 H 1.09002 * 109.47122 * 299.99863 * 17 16 15 43 43 H 1.09005 * 109.47524 * 59.99520 * 17 16 15 44 44 H 1.08990 * 109.47491 * 299.99877 * 18 17 16 45 45 H 1.09007 * 109.46905 * 60.00316 * 18 17 16 46 46 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.03243 * 0.02562 * 27 11 10 48 48 H 1.08999 * 109.46634 * 178.23927 * 28 9 8 49 49 H 1.09006 * 109.46422 * 58.27823 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5711 -0.7720 -1.2108 6 1 3.9677 0.2432 -1.2305 7 8 4.0540 -1.4950 -2.3450 8 6 4.0229 -1.4731 0.0722 9 7 3.5093 -0.7423 1.2377 10 6 4.0372 -1.3061 2.4873 11 6 3.5010 -2.7021 2.6745 12 6 4.1957 -3.7832 2.1638 13 6 3.7066 -5.0650 2.3343 14 6 2.5227 -5.2689 3.0166 15 6 1.8242 -4.1860 3.5302 16 8 0.6596 -4.3840 4.2021 17 6 0.2134 -5.7342 4.3430 18 6 -1.1033 -5.7575 5.1218 19 6 -1.5743 -7.1814 5.2699 20 1 -0.9928 -7.9889 4.8501 21 6 -2.7480 -7.4531 5.9404 22 7 -3.4563 -6.4698 6.4512 23 14 -3.3314 -9.2182 6.1245 24 1 -2.3625 -10.1309 5.4662 25 1 -3.4317 -9.5584 7.5664 26 1 -4.6640 -9.3681 5.4866 27 6 2.3191 -2.9008 3.3610 28 6 2.0409 -0.7236 1.2479 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5153 0.8891 31 1 -0.3634 0.5124 -0.8908 32 1 1.6452 -1.7391 -1.2691 33 1 1.7156 -0.1869 -2.1398 34 1 5.0175 -1.5648 -2.3857 35 1 3.6374 -2.4926 0.0840 36 1 5.1120 -1.4961 0.1093 37 1 5.1257 -1.3383 2.4400 38 1 3.7283 -0.6827 3.3263 39 1 5.1217 -3.6260 1.6308 40 1 4.2508 -5.9077 1.9341 41 1 2.1408 -6.2704 3.1492 42 1 0.0600 -6.1710 3.3562 43 1 0.9646 -6.3108 4.8828 44 1 -0.9496 -5.3209 6.1086 45 1 -1.8548 -5.1809 4.5824 46 1 -4.2819 -6.6610 6.9232 47 1 1.7791 -2.0565 3.7633 48 1 1.6905 -0.2025 2.1388 49 1 1.6647 -1.7466 1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414528864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:34 Heat of formation + Delta-G solvation = -82.168008 kcal Electronic energy + Delta-G solvation = -27036.804495 eV Core-core repulsion = 23349.010224 eV Total energy + Delta-G solvation = -3687.794271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.44085 -39.34832 -37.50696 -36.33189 -34.60343 -33.40367 -31.49224 -30.77558 -30.05318 -29.25395 -26.91088 -26.67502 -25.04785 -23.13329 -22.65471 -21.73594 -21.55291 -20.29602 -19.84459 -17.67257 -17.37388 -16.29959 -16.07849 -15.96497 -15.65659 -15.39185 -15.34042 -14.96672 -14.85863 -14.50596 -14.13736 -13.94908 -13.34296 -13.13576 -12.91886 -12.88822 -12.64146 -12.37345 -12.34375 -12.11666 -12.02431 -11.63406 -11.45850 -11.42116 -11.29858 -10.95086 -10.93302 -10.85132 -10.74970 -10.57767 -10.51583 -10.18011 -9.90807 -9.69770 -9.32375 -8.82309 -8.56399 -8.48377 -7.91349 -6.13557 -4.18344 1.35259 1.59396 3.24301 3.31424 3.34923 3.51580 3.75921 3.86414 4.05712 4.37808 4.49668 4.57022 4.73024 4.80425 4.81169 4.93021 5.05593 5.08157 5.18428 5.21591 5.23029 5.36213 5.41806 5.45912 5.51044 5.54679 5.57081 5.63180 5.70012 5.73663 5.75392 5.80890 5.97415 5.98231 6.00420 6.02610 6.09631 6.20073 6.44229 6.50105 6.55866 6.67026 6.77047 6.80917 6.90362 7.36517 7.46498 7.59792 7.77300 8.00702 8.20145 8.87351 9.46276 10.98038 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002596 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.922063 B =10782.741814 C =11397.707587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.110 4.110 5 C 0.108 3.892 6 H 0.062 0.938 7 O -0.567 6.567 8 C 0.019 3.981 9 N -0.523 5.523 10 C 0.096 3.904 11 C -0.091 4.091 12 C -0.161 4.161 13 C -0.080 4.080 14 C -0.210 4.210 15 C 0.146 3.854 16 O -0.315 6.315 17 C 0.065 3.935 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.150 4.150 28 C 0.050 3.950 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.377 0.623 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.126 0.874 48 H 0.079 0.921 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.071 13.093 -13.694 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.147 4.147 5 C 0.049 3.951 6 H 0.080 0.920 7 O -0.371 6.371 8 C -0.109 4.109 9 N -0.246 5.246 10 C -0.031 4.031 11 C -0.092 4.092 12 C -0.180 4.180 13 C -0.098 4.098 14 C -0.229 4.229 15 C 0.099 3.901 16 O -0.228 6.228 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.565 4.565 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.169 4.169 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.224 0.776 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.144 0.856 48 H 0.097 0.903 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.286 13.721 -13.677 25.310 hybrid contribution 0.007 -2.157 0.369 2.189 sum 16.293 11.564 -13.308 24.006 Atomic orbital electron populations 1.21779 0.94193 1.02454 1.02037 1.21094 0.95764 0.99945 0.93549 0.90323 1.21616 0.93128 1.01720 0.98268 1.21779 0.95088 0.94225 0.84036 0.92003 1.86541 1.26636 1.78191 1.45774 1.22870 0.99922 0.97218 0.90912 1.62318 1.08807 1.51883 1.01567 1.21224 0.99714 0.89752 0.92455 1.20281 0.94836 0.96595 0.97524 1.20782 1.00851 0.92285 1.04099 1.20889 0.95061 0.96879 0.96958 1.21409 0.98050 0.99068 1.04397 1.19206 0.86353 0.93672 0.90869 1.86176 1.34704 1.32598 1.69349 1.23338 0.99041 0.78273 1.00207 1.19125 0.88697 0.97876 0.95455 1.21002 1.07415 0.91702 1.36367 0.92336 1.24990 0.96406 0.97568 0.95209 1.69982 1.15135 1.31274 1.36321 0.86433 0.78724 0.84317 0.77936 1.19637 1.20795 1.20800 1.20311 0.97488 0.95035 1.04091 1.22311 0.86791 1.00243 0.98390 0.92332 0.92101 0.92381 0.91339 0.91213 0.77648 0.92978 0.90891 0.89778 0.89431 0.86719 0.86215 0.85239 0.93177 0.93138 0.95388 0.95409 0.92724 0.85572 0.90294 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.20 37.16 0.34 -0.98 16 2 C -0.08 -0.78 2.88 -90.54 -0.26 -1.04 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.07 4.94 -26.61 -0.13 -1.20 16 5 C 0.11 0.97 3.63 -26.65 -0.10 0.88 16 6 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 7 O -0.57 -5.21 13.32 -35.23 -0.47 -5.68 16 8 C 0.02 0.18 4.45 -3.83 -0.02 0.16 16 9 N -0.52 -5.03 4.86 -236.11 -1.15 -6.18 16 10 C 0.10 0.92 5.56 -4.97 -0.03 0.89 16 11 C -0.09 -1.09 4.03 -104.65 -0.42 -1.51 16 12 C -0.16 -1.90 8.11 -39.56 -0.32 -2.22 16 13 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 14 C -0.21 -3.27 9.04 -39.43 -0.36 -3.63 16 15 C 0.15 2.51 6.69 -39.21 -0.26 2.25 16 16 O -0.32 -6.45 10.14 -19.42 -0.20 -6.65 16 17 C 0.07 1.40 4.68 37.16 0.17 1.57 16 18 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.66 9.11 -34.44 -0.31 -14.98 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 23 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.15 -2.19 7.97 -39.43 -0.31 -2.50 16 28 C 0.05 0.52 3.83 -3.84 -0.01 0.51 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.38 1.83 9.08 45.56 0.41 2.24 16 35 H 0.05 0.59 6.55 -51.93 -0.34 0.25 16 36 H 0.07 0.55 8.06 -51.93 -0.42 0.14 16 37 H 0.08 0.69 8.00 -51.93 -0.42 0.27 16 38 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.11 1.09 8.03 -52.49 -0.42 0.67 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 42 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.13 1.76 8.03 -52.49 -0.42 1.34 16 48 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 49 H 0.05 0.62 6.48 -51.93 -0.34 0.28 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -31.02 386.88 -10.61 -41.64 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.68 Total: 1.59 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.67 Total: -21.09 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: -0.41 Total: -31.83 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.67 Total: -12.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.02 -10.61 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414528864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.533 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds