Wall clock time and date at job start Tue Mar 31 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.53707 * 2 1 4 4 C 1.53126 * 109.50168 * 239.90404 * 2 1 3 5 5 C 1.53114 * 109.16071 * 182.40725 * 4 2 1 6 6 H 1.09010 * 109.49966 * 297.67525 * 5 4 2 7 7 O 1.42899 * 109.50471 * 177.59776 * 5 4 2 8 8 C 1.53035 * 109.28189 * 57.65474 * 5 4 2 9 9 N 1.46848 * 109.52142 * 300.82150 * 8 5 4 10 10 C 1.46906 * 111.00135 * 185.83611 * 9 8 5 11 11 C 1.50701 * 109.46898 * 293.95942 * 10 9 8 12 12 C 1.38287 * 119.97415 * 89.99673 * 11 10 9 13 13 C 1.38246 * 120.10809 * 179.97438 * 12 11 10 14 14 C 1.38163 * 120.05945 * 359.95143 * 13 12 11 15 15 C 1.38718 * 119.94292 * 0.02980 * 14 13 12 16 16 O 1.35900 * 120.05479 * 180.02562 * 15 14 13 17 17 C 1.42896 * 117.00113 * 0.02562 * 16 15 14 18 18 C 1.52995 * 109.47270 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47179 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00174 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99797 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00361 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46916 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46949 * 119.99853 * 23 21 19 26 26 H 1.48498 * 109.47122 * 239.99840 * 23 21 19 27 27 C 1.38124 * 119.96544 * 269.71682 * 11 10 9 28 28 C 1.46847 * 111.19788 * 61.74047 * 9 8 5 29 29 H 1.09001 * 109.47175 * 180.09372 * 1 2 3 30 30 H 1.09001 * 109.47183 * 300.09420 * 1 2 3 31 31 H 1.09001 * 109.47275 * 60.09378 * 1 2 3 32 32 H 1.09001 * 109.52438 * 302.31069 * 4 2 1 33 33 H 1.09004 * 109.51760 * 62.49971 * 4 2 1 34 34 H 0.96695 * 114.00106 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.45907 * 60.83499 * 8 5 4 36 36 H 1.08999 * 109.46252 * 180.82076 * 8 5 4 37 37 H 1.09000 * 109.46657 * 53.95704 * 10 9 8 38 38 H 1.08997 * 109.47009 * 173.95451 * 10 9 8 39 39 H 1.07996 * 119.94465 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.96960 * 179.97438 * 13 12 11 41 41 H 1.07996 * 120.03148 * 179.97438 * 14 13 12 42 42 H 1.09002 * 109.47122 * 299.99863 * 17 16 15 43 43 H 1.09005 * 109.47524 * 59.99520 * 17 16 15 44 44 H 1.08990 * 109.47491 * 299.99877 * 18 17 16 45 45 H 1.09007 * 109.46905 * 60.00316 * 18 17 16 46 46 H 0.97002 * 120.00123 * 180.02562 * 22 21 19 47 47 H 1.07998 * 120.03243 * 0.02562 * 27 11 10 48 48 H 1.08999 * 109.46634 * 178.23927 * 28 9 8 49 49 H 1.09006 * 109.46422 * 58.27823 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7238 -1.2488 5 6 3.5711 -0.7720 -1.2108 6 1 3.9677 0.2432 -1.2305 7 8 4.0540 -1.4950 -2.3450 8 6 4.0229 -1.4731 0.0722 9 7 3.5093 -0.7423 1.2377 10 6 4.0372 -1.3061 2.4873 11 6 3.5010 -2.7021 2.6745 12 6 4.1957 -3.7832 2.1638 13 6 3.7066 -5.0650 2.3343 14 6 2.5227 -5.2689 3.0166 15 6 1.8242 -4.1860 3.5302 16 8 0.6596 -4.3840 4.2021 17 6 0.2134 -5.7342 4.3430 18 6 -1.1033 -5.7575 5.1218 19 6 -1.5743 -7.1814 5.2699 20 1 -0.9928 -7.9889 4.8501 21 6 -2.7480 -7.4531 5.9404 22 7 -3.4563 -6.4698 6.4512 23 14 -3.3314 -9.2182 6.1245 24 1 -2.3625 -10.1309 5.4662 25 1 -3.4317 -9.5584 7.5664 26 1 -4.6640 -9.3681 5.4866 27 6 2.3191 -2.9008 3.3610 28 6 2.0409 -0.7236 1.2479 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5153 0.8891 31 1 -0.3634 0.5124 -0.8908 32 1 1.6452 -1.7391 -1.2691 33 1 1.7156 -0.1869 -2.1398 34 1 5.0175 -1.5648 -2.3857 35 1 3.6374 -2.4926 0.0840 36 1 5.1120 -1.4961 0.1093 37 1 5.1257 -1.3383 2.4400 38 1 3.7283 -0.6827 3.3263 39 1 5.1217 -3.6260 1.6308 40 1 4.2508 -5.9077 1.9341 41 1 2.1408 -6.2704 3.1492 42 1 0.0600 -6.1710 3.3562 43 1 0.9646 -6.3108 4.8828 44 1 -0.9496 -5.3209 6.1086 45 1 -1.8548 -5.1809 4.5824 46 1 -4.2819 -6.6610 6.9232 47 1 1.7791 -2.0565 3.7633 48 1 1.6905 -0.2025 2.1388 49 1 1.6647 -1.7466 1.2543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414528864.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:34 Heat of formation + Delta-G solvation = -102.759294 kcal Electronic energy + Delta-G solvation = -27037.697400 eV Core-core repulsion = 23349.010224 eV Total energy + Delta-G solvation = -3688.687176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45695 -40.41548 -38.66118 -37.13690 -35.60939 -35.32328 -32.67946 -32.27901 -30.89829 -30.65838 -27.75033 -27.57034 -26.91426 -24.23812 -23.66066 -23.11116 -22.55489 -21.57275 -20.69413 -19.13129 -18.18828 -18.05750 -17.08461 -17.03011 -16.98018 -16.64771 -16.54071 -16.28320 -15.79112 -15.70033 -15.01874 -14.86926 -14.42726 -14.37593 -14.25818 -14.17158 -13.78709 -13.76356 -13.24699 -13.07443 -13.01845 -12.88078 -12.79677 -12.64865 -12.61918 -12.51654 -12.13469 -12.01024 -11.71105 -11.66462 -11.62532 -11.57937 -11.41727 -11.28329 -10.87078 -10.66198 -9.87445 -9.41440 -9.14789 -8.30048 -6.44045 0.27280 0.46625 1.38703 1.39673 1.53133 2.23038 2.47245 2.65033 2.92235 3.04406 3.34995 3.71080 3.79052 3.86213 3.91477 3.98104 4.09092 4.12791 4.18403 4.20436 4.30192 4.33083 4.34843 4.48324 4.51016 4.57349 4.67626 4.68461 4.73333 4.77955 4.79559 4.87112 4.93206 4.97628 5.04032 5.06308 5.21317 5.26450 5.26978 5.36254 5.41905 5.42936 5.45698 5.52499 5.64337 5.84718 5.98703 6.02331 6.03734 6.51127 6.70621 6.91041 7.26348 8.83335 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002596 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.922063 B =10782.741814 C =11397.707587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.091 0.909 4 C -0.111 4.111 5 C 0.112 3.888 6 H 0.075 0.925 7 O -0.583 6.583 8 C 0.022 3.978 9 N -0.515 5.515 10 C 0.097 3.903 11 C -0.083 4.083 12 C -0.148 4.148 13 C -0.080 4.080 14 C -0.224 4.224 15 C 0.106 3.894 16 O -0.342 6.342 17 C 0.086 3.914 18 C 0.030 3.970 19 C -0.547 4.547 20 H 0.069 0.931 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.976 3.024 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.156 4.156 28 C 0.052 3.948 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.030 0.970 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.059 0.941 44 H -0.001 1.001 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.123 0.877 48 H 0.078 0.922 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.811 13.015 -15.084 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.097 4.097 3 H 0.109 0.891 4 C -0.149 4.149 5 C 0.053 3.947 6 H 0.093 0.907 7 O -0.391 6.391 8 C -0.107 4.107 9 N -0.238 5.238 10 C -0.031 4.031 11 C -0.085 4.085 12 C -0.167 4.167 13 C -0.098 4.098 14 C -0.243 4.243 15 C 0.060 3.940 16 O -0.256 6.256 17 C 0.012 3.988 18 C -0.008 4.008 19 C -0.585 4.585 20 H 0.088 0.912 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.800 3.200 24 H -0.182 1.182 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.176 4.176 28 C -0.076 4.076 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.049 0.951 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.110 0.890 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.016 0.984 46 H 0.076 0.924 47 H 0.141 0.859 48 H 0.096 0.904 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 19.068 13.653 -15.085 27.884 hybrid contribution -0.740 -2.014 0.717 2.262 sum 18.328 11.639 -14.368 26.035 Atomic orbital electron populations 1.21780 0.94400 1.01479 1.02771 1.21049 0.95608 1.00259 0.92778 0.89068 1.21616 0.94285 1.00387 0.98591 1.21717 0.94199 0.94816 0.83983 0.90728 1.86507 1.28631 1.78242 1.45719 1.22908 1.01285 0.95843 0.90640 1.62364 1.07951 1.51621 1.01863 1.21373 1.01079 0.87968 0.92630 1.20614 0.93507 0.98416 0.95915 1.21221 1.01466 0.91476 1.02530 1.21240 0.94038 0.98583 0.95976 1.21498 0.99232 0.98296 1.05293 1.19552 0.86102 0.95420 0.92899 1.86082 1.36981 1.31459 1.71083 1.22835 0.96839 0.79431 0.99704 1.18954 0.90602 0.96995 0.94213 1.21411 1.07995 0.92476 1.36573 0.91245 1.26042 0.96447 1.02605 0.94545 1.70121 1.15733 1.33998 1.37092 0.85234 0.78355 0.78277 0.78183 1.18188 1.20084 1.20161 1.20469 0.98510 0.93959 1.04624 1.22262 0.87583 0.98722 0.99003 0.94145 0.91863 0.91163 0.93687 0.90818 0.75446 0.95131 0.88287 0.87105 0.89013 0.83262 0.83417 0.85826 0.92565 0.92315 0.98269 0.98402 0.92368 0.85906 0.90385 0.96135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.20 71.98 0.66 -1.99 16 2 C -0.08 -1.38 2.88 -10.74 -0.03 -1.41 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -2.08 4.94 30.67 0.15 -1.93 16 5 C 0.11 1.76 3.63 30.64 0.11 1.87 16 6 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 7 O -0.58 -9.36 13.32 -148.98 -1.98 -11.35 16 8 C 0.02 0.33 4.45 86.32 0.38 0.72 16 9 N -0.52 -8.70 4.86 -900.92 -4.38 -13.08 16 10 C 0.10 1.58 5.56 85.56 0.48 2.06 16 11 C -0.08 -1.85 4.03 -19.88 -0.08 -1.93 16 12 C -0.15 -3.05 8.11 22.28 0.18 -2.87 16 13 C -0.08 -1.92 10.04 22.25 0.22 -1.70 16 14 C -0.22 -7.01 9.04 22.37 0.20 -6.81 16 15 C 0.11 3.77 6.69 22.51 0.15 3.92 16 16 O -0.34 -14.89 10.14 -92.42 -0.94 -15.83 16 17 C 0.09 3.89 4.68 71.98 0.34 4.22 16 18 C 0.03 1.64 5.34 29.85 0.16 1.80 16 19 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 20 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.00 0.13 5.46 84.66 0.46 0.59 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 23 Si 0.98 43.77 29.54 68.60 2.03 45.80 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 27 C -0.16 -4.64 7.97 22.37 0.18 -4.46 16 28 C 0.05 1.06 3.83 86.32 0.33 1.39 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.40 2.64 9.08 -74.06 -0.67 1.97 16 35 H 0.03 0.62 6.55 -2.39 -0.02 0.60 16 36 H 0.10 1.04 8.06 -2.39 -0.02 1.02 16 37 H 0.11 1.29 8.00 -2.39 -0.02 1.27 16 38 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 39 H 0.15 2.09 8.03 -2.91 -0.02 2.06 16 40 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.12 3.90 6.30 -2.91 -0.02 3.88 16 42 H 0.06 2.41 7.66 -2.39 -0.02 2.39 16 43 H 0.06 2.50 7.66 -2.38 -0.02 2.48 16 44 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 45 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 46 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.12 3.60 8.03 -2.91 -0.02 3.58 16 48 H 0.08 1.57 8.12 -2.39 -0.02 1.56 16 49 H 0.02 0.53 6.48 -2.38 -0.02 0.52 16 Total: -1.00 -69.90 386.88 -0.61 -70.51 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.25 Total: 18.15 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.13 Total: -37.56 kcal Atomic # 7 Polarization: -65.64 SS G_CDS: -4.09 Total: -69.73 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.92 Total: -27.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.90 -0.61 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414528864.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.245 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds