Wall clock time and date at job start Tue Mar 31 2020 12:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99727 * 2 1 4 4 C 1.53001 * 109.46624 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47668 * 64.99855 * 4 3 2 6 6 C 1.35891 * 117.00374 * 179.97438 * 5 4 3 7 7 C 1.38731 * 120.05592 * 180.02562 * 6 5 4 8 8 C 1.38150 * 119.94505 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.05429 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.94524 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47259 * 345.72861 * 10 9 8 12 12 C 1.53004 * 109.47370 * 105.73345 * 10 9 8 13 13 N 1.46904 * 109.47434 * 225.73256 * 10 9 8 14 14 C 1.46890 * 111.00439 * 153.29881 * 13 10 9 15 15 C 1.52999 * 109.47319 * 184.33389 * 14 13 10 16 16 C 1.50698 * 115.54859 * 276.40581 * 15 14 13 17 17 H 1.08001 * 119.99963 * 114.44483 * 16 15 14 18 18 C 1.37876 * 120.00259 * 294.44776 * 16 15 14 19 19 N 1.31511 * 119.99828 * 353.30260 * 18 16 15 20 20 Si 1.86801 * 120.00334 * 173.30639 * 18 16 15 21 21 H 1.48497 * 109.47229 * 89.99559 * 20 18 16 22 22 H 1.48495 * 109.47330 * 210.00262 * 20 18 16 23 23 H 1.48508 * 109.46543 * 329.99842 * 20 18 16 24 24 C 1.53001 * 117.49645 * 130.70027 * 15 14 13 25 25 C 1.52998 * 60.00005 * 252.50779 * 24 15 14 26 26 C 1.38271 * 120.11395 * 0.27390 * 9 8 7 27 27 C 1.38146 * 120.05338 * 359.44862 * 26 9 8 28 28 H 1.09000 * 109.47690 * 59.99889 * 1 2 3 29 29 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47239 * 300.00148 * 1 2 3 31 31 H 1.08995 * 109.47750 * 60.00108 * 3 2 1 32 32 H 1.09001 * 109.46844 * 299.99592 * 3 2 1 33 33 H 1.08994 * 109.47392 * 304.99244 * 4 3 2 34 34 H 1.09004 * 109.46788 * 184.99841 * 4 3 2 35 35 H 1.07997 * 120.02838 * 359.95907 * 7 6 5 36 36 H 1.07995 * 119.97596 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47265 * 180.02562 * 12 10 9 38 38 H 1.08992 * 109.47091 * 59.99636 * 12 10 9 39 39 H 1.09000 * 109.46573 * 299.99856 * 12 10 9 40 40 H 1.00900 * 110.99747 * 29.34380 * 13 10 9 41 41 H 1.08999 * 109.47226 * 304.33278 * 14 13 10 42 42 H 1.09006 * 109.47019 * 64.33148 * 14 13 10 43 43 H 0.96999 * 120.00019 * 185.01042 * 19 18 16 44 44 H 1.08997 * 117.50402 * 359.97438 * 24 15 14 45 45 H 1.09010 * 117.49691 * 145.02001 * 24 15 14 46 46 H 1.08994 * 117.50447 * 252.51390 * 25 24 15 47 47 H 1.09000 * 117.51757 * 107.47606 * 25 24 15 48 48 H 1.08003 * 119.97433 * 179.70601 * 26 9 8 49 49 H 1.07997 * 120.03114 * 180.27351 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3987 -1.3841 7 6 5.7885 -0.1825 -2.5460 8 6 7.1483 -0.3648 -2.7087 9 6 8.0239 0.0318 -1.7149 10 6 9.5066 -0.1688 -1.8946 11 1 9.6827 -0.8521 -2.7254 12 6 10.1711 1.1771 -2.1915 13 7 10.0767 -0.7356 -0.6651 14 6 11.2885 -1.5131 -0.9564 15 6 11.7910 -2.1749 0.3283 16 6 12.6491 -1.3080 1.2132 17 1 12.2966 -1.0202 2.1927 18 6 13.8843 -0.8823 0.7726 19 7 14.3706 -1.3376 -0.3613 20 14 14.8669 0.3410 1.7861 21 1 15.7365 -0.3924 2.7407 22 1 15.7086 1.1678 0.8845 23 1 13.9366 1.2202 2.5391 24 6 12.1160 -3.6689 0.2727 25 6 10.8665 -3.1848 1.0110 26 6 7.5410 0.6066 -0.5537 27 6 6.1827 0.7964 -0.3886 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1765 0.0889 35 1 5.1050 -0.4923 -3.3226 36 1 7.5277 -0.8168 -3.6131 37 1 11.2435 1.0319 -2.3220 38 1 9.9950 1.8603 -1.3608 39 1 9.7481 1.5977 -3.1038 40 1 9.3957 -1.2971 -0.1762 41 1 11.0587 -2.2811 -1.6949 42 1 12.0596 -0.8504 -1.3494 43 1 15.2689 -1.0953 -0.6358 44 1 11.9715 -4.1805 -0.6788 45 1 12.9509 -4.0252 0.8764 46 1 10.8791 -3.2224 2.1002 47 1 9.9000 -3.3774 0.5451 48 1 8.2267 0.9113 0.2232 49 1 5.8063 1.2494 0.5166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430725630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:03 Heat of formation + Delta-G solvation = -35.029925 kcal Electronic energy + Delta-G solvation = -26339.032894 eV Core-core repulsion = 22653.282684 eV Total energy + Delta-G solvation = -3685.750210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.23945 -38.59388 -37.77057 -36.82343 -34.76671 -31.91522 -31.39681 -30.84344 -30.05220 -28.10359 -26.71925 -25.74138 -24.47132 -23.78273 -22.85680 -21.59355 -21.08638 -19.88693 -18.93543 -18.38144 -17.18646 -16.60879 -16.24260 -15.98476 -15.39578 -15.39017 -15.04659 -14.69443 -14.46986 -13.95418 -13.93140 -13.57738 -13.31531 -13.26736 -12.99419 -12.81696 -12.52110 -12.35440 -11.95945 -11.80363 -11.64576 -11.53201 -11.41625 -11.06280 -10.91031 -10.84001 -10.75443 -10.65163 -10.45916 -10.28787 -10.15374 -10.11182 -9.29897 -8.90283 -8.85608 -8.45351 -8.08672 -7.95686 -7.50242 -5.94379 -3.96382 1.43108 1.52604 3.02791 3.32775 3.34615 3.41706 3.46618 3.85282 4.48025 4.49873 4.70313 4.76782 4.83353 4.86762 4.96065 4.98047 5.02350 5.04134 5.07016 5.24638 5.29721 5.29969 5.50358 5.51471 5.58253 5.64210 5.81461 5.89401 6.12850 6.17261 6.22000 6.30797 6.40683 6.41980 6.48200 6.59765 6.68769 6.69935 6.72009 6.77202 6.80400 6.85530 7.02642 7.13811 7.40032 7.45766 7.70335 7.98023 8.03838 8.24391 8.56413 9.01059 9.65604 11.14216 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002376 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.822177 B =11781.384611 C =11871.326034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.311 6.311 6 C 0.121 3.879 7 C -0.154 4.154 8 C -0.077 4.077 9 C -0.116 4.116 10 C 0.126 3.874 11 H 0.042 0.958 12 C -0.132 4.132 13 N -0.669 5.669 14 C 0.107 3.893 15 C 0.059 3.941 16 C -0.475 4.475 17 H 0.058 0.942 18 C 0.068 3.932 19 N -0.885 5.885 20 Si 0.889 3.111 21 H -0.284 1.284 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.177 4.177 25 C -0.211 4.211 26 C -0.056 4.056 27 C -0.211 4.211 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.332 0.668 41 H -0.004 1.004 42 H 0.087 0.913 43 H 0.258 0.742 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.137 0.863 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.324 5.906 -2.916 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.225 6.225 6 C 0.076 3.924 7 C -0.173 4.173 8 C -0.096 4.096 9 C -0.117 4.117 10 C 0.016 3.984 11 H 0.060 0.940 12 C -0.189 4.189 13 N -0.300 5.300 14 C -0.021 4.021 15 C 0.058 3.942 16 C -0.512 4.512 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.522 5.522 20 Si 0.717 3.283 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.215 4.215 25 C -0.248 4.248 26 C -0.074 4.074 27 C -0.229 4.229 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.150 0.850 41 H 0.014 0.986 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.154 0.846 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.874 6.344 -3.043 23.932 hybrid contribution 0.103 0.046 0.311 0.331 sum -22.771 6.390 -2.732 23.808 Atomic orbital electron populations 1.22762 0.80877 1.03027 0.99911 1.87987 1.19774 1.27109 1.95393 1.22584 0.91719 0.85753 1.01313 1.22805 0.93456 0.98331 0.86879 1.86083 1.20436 1.77138 1.38813 1.18980 0.82015 0.96538 0.94838 1.20309 0.95422 1.04619 0.96956 1.20881 0.91876 0.98163 0.98660 1.20044 0.95720 1.01058 0.94875 1.20397 0.88224 0.96854 0.92938 0.94016 1.21750 1.00843 0.96062 1.00294 1.60598 1.08088 1.40985 1.20347 1.21603 0.90574 0.94345 0.95579 1.18846 0.94919 0.87093 0.93317 1.20392 1.00731 1.29474 1.00639 0.92407 1.24930 0.97583 0.96016 0.94831 1.69966 1.15995 1.44689 1.21597 0.86643 0.79953 0.81754 0.79962 1.20988 1.21325 1.19799 1.22752 0.97373 1.01974 0.99425 1.22825 0.93116 1.10531 0.98374 1.20954 0.94171 0.95167 0.97104 1.21243 0.94323 1.07640 0.99736 0.93962 0.89449 0.94075 0.91133 0.92137 0.90988 0.90428 0.85621 0.85659 0.92002 0.92143 0.93575 0.85028 0.98573 0.89424 0.93190 0.92157 0.90301 0.90590 0.92059 0.84552 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.84 10.67 -40.08 -0.43 -4.27 16 3 C 0.06 0.48 6.32 37.16 0.23 0.71 16 4 C 0.06 0.55 5.12 37.16 0.19 0.74 16 5 O -0.31 -3.86 10.10 -24.25 -0.24 -4.11 16 6 C 0.12 1.59 6.69 -39.21 -0.26 1.33 16 7 C -0.15 -2.00 9.99 -39.43 -0.39 -2.39 16 8 C -0.08 -1.02 9.66 -39.60 -0.38 -1.41 16 9 C -0.12 -1.71 4.66 -104.60 -0.49 -2.19 16 10 C 0.13 2.07 2.82 -68.86 -0.19 1.88 16 11 H 0.04 0.70 7.50 -51.93 -0.39 0.31 16 12 C -0.13 -2.12 9.37 37.16 0.35 -1.77 16 13 N -0.67 -12.99 5.88 -107.95 -0.64 -13.62 16 14 C 0.11 2.44 5.39 -3.83 -0.02 2.42 16 15 C 0.06 1.45 1.50 -155.66 -0.23 1.21 16 16 C -0.47 -12.94 8.83 -34.44 -0.30 -13.24 16 17 H 0.06 1.60 7.82 -52.49 -0.41 1.18 16 18 C 0.07 1.87 5.25 -17.82 -0.09 1.78 16 19 N -0.88 -24.99 12.55 55.43 0.70 -24.29 16 20 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 C -0.18 -4.17 9.88 -26.73 -0.26 -4.43 16 25 C -0.21 -4.61 9.39 -26.73 -0.25 -4.86 16 26 C -0.06 -0.79 9.00 -39.60 -0.36 -1.15 16 27 C -0.21 -2.68 9.04 -39.43 -0.36 -3.04 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.65 7.66 -51.93 -0.40 0.26 16 34 H 0.08 0.55 7.66 -51.93 -0.40 0.15 16 35 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.45 7.99 -52.49 -0.42 1.03 16 37 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 38 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.33 6.28 7.16 -39.29 -0.28 6.00 16 41 H 0.00 -0.08 7.72 -51.93 -0.40 -0.49 16 42 H 0.09 2.24 6.76 -51.93 -0.35 1.89 16 43 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 44 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 45 H 0.08 1.94 8.14 -51.92 -0.42 1.52 16 46 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 47 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 48 H 0.14 2.00 7.88 -52.48 -0.41 1.59 16 49 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -30.21 401.56 -9.67 -39.88 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.37 Total: 7.14 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.71 Total: -23.10 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.06 Total: -37.91 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.67 Total: -8.38 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.21 -9.67 -39.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.848 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds