Wall clock time and date at job start Tue Mar 31 2020 12:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99727 * 2 1 4 4 C 1.53001 * 109.46624 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47668 * 64.99855 * 4 3 2 6 6 C 1.35891 * 117.00374 * 179.97438 * 5 4 3 7 7 C 1.38731 * 120.05592 * 180.02562 * 6 5 4 8 8 C 1.38150 * 119.94505 * 179.97438 * 7 6 5 9 9 C 1.38264 * 120.05429 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.94524 * 179.97438 * 9 8 7 11 11 H 1.09001 * 109.47259 * 345.72861 * 10 9 8 12 12 C 1.53004 * 109.47370 * 105.73345 * 10 9 8 13 13 N 1.46904 * 109.47434 * 225.73256 * 10 9 8 14 14 C 1.46890 * 111.00439 * 153.29881 * 13 10 9 15 15 C 1.52999 * 109.47319 * 184.33389 * 14 13 10 16 16 C 1.50698 * 115.54859 * 276.40581 * 15 14 13 17 17 H 1.08001 * 119.99963 * 114.44483 * 16 15 14 18 18 C 1.37876 * 120.00259 * 294.44776 * 16 15 14 19 19 N 1.31511 * 119.99828 * 353.30260 * 18 16 15 20 20 Si 1.86801 * 120.00334 * 173.30639 * 18 16 15 21 21 H 1.48497 * 109.47229 * 89.99559 * 20 18 16 22 22 H 1.48495 * 109.47330 * 210.00262 * 20 18 16 23 23 H 1.48508 * 109.46543 * 329.99842 * 20 18 16 24 24 C 1.53001 * 117.49645 * 130.70027 * 15 14 13 25 25 C 1.52998 * 60.00005 * 252.50779 * 24 15 14 26 26 C 1.38271 * 120.11395 * 0.27390 * 9 8 7 27 27 C 1.38146 * 120.05338 * 359.44862 * 26 9 8 28 28 H 1.09000 * 109.47690 * 59.99889 * 1 2 3 29 29 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47239 * 300.00148 * 1 2 3 31 31 H 1.08995 * 109.47750 * 60.00108 * 3 2 1 32 32 H 1.09001 * 109.46844 * 299.99592 * 3 2 1 33 33 H 1.08994 * 109.47392 * 304.99244 * 4 3 2 34 34 H 1.09004 * 109.46788 * 184.99841 * 4 3 2 35 35 H 1.07997 * 120.02838 * 359.95907 * 7 6 5 36 36 H 1.07995 * 119.97596 * 180.02562 * 8 7 6 37 37 H 1.08997 * 109.47265 * 180.02562 * 12 10 9 38 38 H 1.08992 * 109.47091 * 59.99636 * 12 10 9 39 39 H 1.09000 * 109.46573 * 299.99856 * 12 10 9 40 40 H 1.00900 * 110.99747 * 29.34380 * 13 10 9 41 41 H 1.08999 * 109.47226 * 304.33278 * 14 13 10 42 42 H 1.09006 * 109.47019 * 64.33148 * 14 13 10 43 43 H 0.96999 * 120.00019 * 185.01042 * 19 18 16 44 44 H 1.08997 * 117.50402 * 359.97438 * 24 15 14 45 45 H 1.09010 * 117.49691 * 145.02001 * 24 15 14 46 46 H 1.08994 * 117.50447 * 252.51390 * 25 24 15 47 47 H 1.09000 * 117.51757 * 107.47606 * 25 24 15 48 48 H 1.08003 * 119.97433 * 179.70601 * 26 9 8 49 49 H 1.07997 * 120.03114 * 180.27351 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3019 0.3987 -1.3841 7 6 5.7885 -0.1825 -2.5460 8 6 7.1483 -0.3648 -2.7087 9 6 8.0239 0.0318 -1.7149 10 6 9.5066 -0.1688 -1.8946 11 1 9.6827 -0.8521 -2.7254 12 6 10.1711 1.1771 -2.1915 13 7 10.0767 -0.7356 -0.6651 14 6 11.2885 -1.5131 -0.9564 15 6 11.7910 -2.1749 0.3283 16 6 12.6491 -1.3080 1.2132 17 1 12.2966 -1.0202 2.1927 18 6 13.8843 -0.8823 0.7726 19 7 14.3706 -1.3376 -0.3613 20 14 14.8669 0.3410 1.7861 21 1 15.7365 -0.3924 2.7407 22 1 15.7086 1.1678 0.8845 23 1 13.9366 1.2202 2.5391 24 6 12.1160 -3.6689 0.2727 25 6 10.8665 -3.1848 1.0110 26 6 7.5410 0.6066 -0.5537 27 6 6.1827 0.7964 -0.3886 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1765 0.0889 35 1 5.1050 -0.4923 -3.3226 36 1 7.5277 -0.8168 -3.6131 37 1 11.2435 1.0319 -2.3220 38 1 9.9950 1.8603 -1.3608 39 1 9.7481 1.5977 -3.1038 40 1 9.3957 -1.2971 -0.1762 41 1 11.0587 -2.2811 -1.6949 42 1 12.0596 -0.8504 -1.3494 43 1 15.2689 -1.0953 -0.6358 44 1 11.9715 -4.1805 -0.6788 45 1 12.9509 -4.0252 0.8764 46 1 10.8791 -3.2224 2.1002 47 1 9.9000 -3.3774 0.5451 48 1 8.2267 0.9113 0.2232 49 1 5.8063 1.2494 0.5166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430725630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:00 Heat of formation + Delta-G solvation = -51.912489 kcal Electronic energy + Delta-G solvation = -26339.764977 eV Core-core repulsion = 22653.282684 eV Total energy + Delta-G solvation = -3686.482293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.19865 -39.59366 -38.80216 -38.21588 -36.16032 -33.99250 -32.30226 -31.91668 -31.16325 -29.23172 -27.73798 -27.24489 -26.12735 -24.61363 -24.01957 -22.93897 -22.46846 -21.15058 -20.84361 -19.28005 -18.26860 -17.80510 -17.25062 -17.03145 -16.56636 -16.48864 -16.14866 -15.91304 -15.85661 -15.44767 -15.10466 -15.03133 -14.71126 -14.41857 -14.23796 -13.70628 -13.63114 -13.45685 -13.26542 -13.16818 -12.89400 -12.77986 -12.72997 -12.59206 -12.44197 -12.31680 -12.21471 -12.03923 -11.79572 -11.67366 -11.63840 -11.17120 -10.83515 -10.66697 -10.42820 -9.96466 -9.91063 -9.09792 -9.01470 -8.03508 -6.10657 0.42229 0.47583 1.42538 1.45459 1.54878 2.22905 2.47453 2.79136 2.82484 3.19759 3.32327 3.69396 3.82832 3.84644 3.97776 4.05746 4.11892 4.30767 4.34232 4.37809 4.40707 4.48099 4.51817 4.54978 4.56829 4.57597 4.61590 4.71233 4.73352 4.79735 4.84383 4.87011 4.89996 4.97684 5.03685 5.12601 5.19152 5.27964 5.33323 5.38887 5.45527 5.60041 5.72114 5.74321 5.83143 5.96685 6.19090 6.39731 6.48109 6.49577 6.75235 6.91460 7.53646 9.04348 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018802 B = 0.002376 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.822177 B =11781.384611 C =11871.326034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.061 3.939 4 C 0.051 3.949 5 O -0.324 6.324 6 C 0.119 3.881 7 C -0.160 4.160 8 C -0.076 4.076 9 C -0.128 4.128 10 C 0.129 3.871 11 H 0.041 0.959 12 C -0.126 4.126 13 N -0.672 5.672 14 C 0.125 3.875 15 C 0.031 3.969 16 C -0.489 4.489 17 H 0.047 0.953 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.946 3.054 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.271 1.271 24 C -0.183 4.183 25 C -0.184 4.184 26 C -0.064 4.064 27 C -0.209 4.209 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.335 0.665 41 H -0.003 1.003 42 H 0.054 0.946 43 H 0.258 0.742 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.127 0.873 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.453 6.655 -2.635 26.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.238 6.238 6 C 0.074 3.926 7 C -0.179 4.179 8 C -0.094 4.094 9 C -0.129 4.129 10 C 0.019 3.981 11 H 0.059 0.941 12 C -0.184 4.184 13 N -0.303 5.303 14 C -0.004 4.004 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.066 0.934 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.772 3.228 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.222 4.222 25 C -0.221 4.221 26 C -0.082 4.082 27 C -0.228 4.228 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.015 0.985 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.145 0.855 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.026 7.097 -2.751 26.158 hybrid contribution 0.647 -0.178 0.242 0.713 sum -24.379 6.919 -2.508 25.466 Atomic orbital electron populations 1.22917 0.79340 1.03708 1.01068 1.87931 1.21641 1.28595 1.95671 1.22732 0.90623 0.85258 1.02875 1.23123 0.94657 0.99087 0.85497 1.86082 1.19836 1.77383 1.40505 1.19141 0.82574 0.96043 0.94860 1.20532 0.95510 1.04374 0.97434 1.21014 0.91885 0.97725 0.98797 1.19861 0.94461 1.02692 0.95880 1.20372 0.89639 0.96520 0.91537 0.94084 1.21702 0.99353 0.96087 1.01289 1.60493 1.07448 1.40317 1.22067 1.21210 0.91033 0.93669 0.94530 1.18945 0.96336 0.87331 0.94314 1.20633 1.01386 1.30003 1.00658 0.93432 1.25571 0.98611 0.97428 0.95883 1.70067 1.16184 1.45784 1.22800 0.85743 0.78617 0.79750 0.78649 1.20491 1.21153 1.19565 1.22693 0.97990 1.01468 1.00023 1.22812 0.93349 1.07545 0.98387 1.20923 0.94779 0.95682 0.96841 1.21397 0.93585 1.07278 1.00502 0.93204 0.89143 0.92474 0.88380 0.91640 0.91220 0.88361 0.84223 0.84170 0.94451 0.92583 0.91192 0.84587 0.98459 0.92789 0.93316 0.91191 0.92072 0.90451 0.89589 0.85500 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.72 10.67 -144.35 -1.54 -9.25 16 3 C 0.06 0.80 6.32 71.98 0.45 1.25 16 4 C 0.05 0.81 5.12 71.98 0.37 1.18 16 5 O -0.32 -7.44 10.10 -87.69 -0.89 -8.33 16 6 C 0.12 2.91 6.69 22.51 0.15 3.06 16 7 C -0.16 -3.83 9.99 22.37 0.22 -3.61 16 8 C -0.08 -1.88 9.66 22.25 0.21 -1.66 16 9 C -0.13 -3.61 4.66 -19.85 -0.09 -3.70 16 10 C 0.13 4.19 2.82 44.17 0.12 4.31 16 11 H 0.04 1.35 7.50 -2.39 -0.02 1.33 16 12 C -0.13 -4.06 9.37 71.98 0.67 -3.38 16 13 N -0.67 -26.01 5.88 -495.45 -2.92 -28.92 16 14 C 0.12 5.72 5.39 86.30 0.47 6.19 16 15 C 0.03 1.55 1.50 -52.93 -0.08 1.47 16 16 C -0.49 -26.95 8.83 25.60 0.23 -26.73 16 17 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 18 C 0.02 1.36 5.25 84.65 0.44 1.80 16 19 N -0.91 -52.30 12.55 21.45 0.27 -52.03 16 20 Si 0.95 44.24 29.55 68.60 2.03 46.27 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 C -0.18 -8.63 9.88 30.59 0.30 -8.33 16 25 C -0.18 -7.81 9.39 30.59 0.29 -7.52 16 26 C -0.06 -1.74 9.00 22.26 0.20 -1.54 16 27 C -0.21 -4.95 9.04 22.37 0.20 -4.75 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 34 H 0.10 1.12 7.66 -2.38 -0.02 1.10 16 35 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.14 2.97 7.99 -2.91 -0.02 2.94 16 37 H 0.04 1.35 7.65 -2.39 -0.02 1.34 16 38 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.34 12.45 7.16 -89.69 -0.64 11.81 16 41 H 0.00 -0.12 7.72 -2.39 -0.02 -0.13 16 42 H 0.05 2.84 6.76 -2.38 -0.02 2.83 16 43 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 44 H 0.07 3.11 8.06 -2.39 -0.02 3.09 16 45 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 46 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 47 H 0.09 3.22 7.81 -2.39 -0.02 3.20 16 48 H 0.13 3.67 7.88 -2.91 -0.02 3.64 16 49 H 0.14 2.71 6.30 -2.91 -0.02 2.69 16 Total: -1.00 -64.69 401.56 2.65 -62.04 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.28 Total: 30.67 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 5.41 Total: -40.44 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.65 Total: -80.95 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -2.43 Total: -17.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.69 2.65 -62.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430725630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.129 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds