Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.46924 * 2 1 4 4 O 1.42900 * 109.46913 * 240.00734 * 2 1 3 5 5 C 1.42902 * 114.00281 * 89.99796 * 4 2 1 6 6 C 1.52995 * 109.46958 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47172 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00168 * 269.72856 * 7 6 5 9 9 C 1.38236 * 119.99902 * 179.76441 * 8 7 6 10 10 C 1.38232 * 120.00269 * 0.48101 * 9 8 7 11 11 C 1.38237 * 119.99810 * 359.79330 * 10 9 8 12 12 C 1.38239 * 120.00247 * 359.95190 * 11 10 9 13 13 C 1.50695 * 109.47324 * 120.00846 * 2 1 3 14 14 O 1.21273 * 120.00414 * 119.99800 * 13 2 1 15 15 N 1.34780 * 119.99880 * 299.99853 * 13 2 1 16 16 C 1.46497 * 120.00245 * 180.02562 * 15 13 2 17 17 C 1.53004 * 109.46932 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47271 * 299.99915 * 17 16 15 19 19 C 1.52998 * 109.47321 * 60.00256 * 17 16 15 20 20 C 1.50705 * 109.46549 * 179.97438 * 17 16 15 21 21 H 1.07999 * 120.00399 * 1.35004 * 20 17 16 22 22 C 1.37875 * 119.99477 * 181.34654 * 20 17 16 23 23 N 1.31519 * 119.99976 * 193.98262 * 22 20 17 24 24 Si 1.86803 * 120.00394 * 13.97782 * 22 20 17 25 25 H 1.48493 * 109.46839 * 84.54634 * 24 22 20 26 26 H 1.48496 * 109.47312 * 204.54796 * 24 22 20 27 27 H 1.48495 * 109.46960 * 324.54776 * 24 22 20 28 28 H 1.08997 * 109.46699 * 299.99536 * 1 2 3 29 29 H 1.08996 * 109.47065 * 59.99878 * 1 2 3 30 30 H 1.09000 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47127 * 60.00180 * 5 4 2 32 32 H 1.09001 * 109.46835 * 300.00033 * 5 4 2 33 33 H 1.08999 * 109.47566 * 59.99996 * 6 5 4 34 34 H 1.09001 * 109.47319 * 299.99669 * 6 5 4 35 35 H 1.07996 * 119.99677 * 359.97438 * 8 7 6 36 36 H 1.08007 * 119.99838 * 180.25276 * 9 8 7 37 37 H 1.08002 * 120.00241 * 179.76935 * 10 9 8 38 38 H 1.07997 * 119.99953 * 179.97438 * 11 10 9 39 39 H 1.07990 * 120.00111 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99941 * 359.97438 * 15 13 2 41 41 H 1.09001 * 109.46749 * 299.99982 * 16 15 13 42 42 H 1.08995 * 109.47203 * 59.99966 * 16 15 13 43 43 H 1.08996 * 109.46957 * 69.37015 * 18 17 16 44 44 H 1.08997 * 109.47121 * 189.37385 * 18 17 16 45 45 H 1.08999 * 109.47167 * 309.37169 * 18 17 16 46 46 H 1.09006 * 109.47137 * 59.99743 * 19 17 16 47 47 H 1.08997 * 109.46913 * 179.97438 * 19 17 16 48 48 H 1.08996 * 109.46767 * 300.00108 * 19 17 16 49 49 H 0.97000 * 120.00132 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.2001 0.1832 -2.2941 6 6 2.7078 -0.6405 -3.4793 7 6 2.9127 0.2630 -4.6679 8 6 1.8796 0.4743 -5.5617 9 6 2.0661 1.3069 -6.6493 10 6 3.2887 1.9203 -6.8487 11 6 4.3236 1.7045 -5.9580 12 6 4.1356 0.8761 -4.8674 13 6 2.0325 -0.7106 1.2303 14 8 2.7297 -1.6966 1.1190 15 7 1.7069 -0.2502 2.4545 16 6 2.1957 -0.9406 3.6506 17 6 1.6861 -0.2191 4.8999 18 6 2.1960 1.2234 4.8995 19 6 0.1561 -0.2192 4.9005 20 6 2.1885 -0.9297 6.1303 21 1 2.8269 -1.7952 6.0312 22 6 1.8329 -0.4750 7.3824 23 7 2.4749 -0.9072 8.4457 24 14 0.4395 0.7552 7.5685 25 1 -0.8569 0.0322 7.6087 26 1 0.6192 1.5197 8.8288 27 1 0.4487 1.6915 6.4160 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 2.9320 0.9515 -2.0451 32 1 1.2538 0.6549 -2.5588 33 1 1.9756 -1.4086 -3.7283 34 1 3.6541 -1.1126 -3.2149 35 1 0.9258 -0.0084 -5.4084 36 1 1.2576 1.4752 -7.3455 37 1 3.4355 2.5679 -7.7005 38 1 5.2789 2.1834 -6.1139 39 1 4.9442 0.7072 -4.1718 40 1 1.1495 0.5387 2.5436 41 1 1.8327 -1.9684 3.6506 42 1 3.2856 -0.9402 3.6504 43 1 1.7023 1.7830 4.1051 44 1 1.9761 1.6868 5.8612 45 1 3.2730 1.2280 4.7318 46 1 -0.2072 -1.2469 4.9008 47 1 -0.2068 0.2944 5.7907 48 1 -0.2075 0.2944 4.0106 49 1 2.2246 -0.5875 9.3267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045917.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = -55.622834 kcal Electronic energy + Delta-G solvation = -26245.927624 eV Core-core repulsion = 22559.284438 eV Total energy + Delta-G solvation = -3686.643186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.90131 -39.55642 -37.88623 -36.57132 -33.94756 -33.40814 -31.81006 -31.23829 -30.97639 -28.65731 -26.44393 -26.20733 -25.04948 -24.21911 -23.24991 -22.92130 -21.27148 -20.08952 -19.23425 -17.34811 -17.16314 -16.81706 -16.12514 -16.08326 -15.48010 -15.41224 -15.21822 -14.79907 -14.66163 -14.19775 -13.77835 -13.64757 -13.38488 -13.31081 -12.98374 -12.90018 -12.77827 -12.64076 -12.48024 -12.21128 -12.11733 -12.06744 -11.68459 -11.39296 -11.32176 -11.30105 -11.15197 -10.45873 -10.32757 -10.19383 -10.09060 -9.97191 -9.33549 -9.26856 -9.11447 -9.06067 -8.70832 -8.56026 -8.45901 -6.16005 -4.13359 0.97196 1.04828 2.89313 3.02900 3.22176 3.29001 3.37111 3.44579 3.94012 4.33819 4.48223 4.55779 4.67878 4.69467 4.78370 4.80112 4.90593 4.94634 5.06667 5.14438 5.14775 5.17351 5.19657 5.39472 5.52091 5.55552 5.61515 5.73515 5.75124 5.82400 5.94873 6.02268 6.04195 6.11255 6.16532 6.29737 6.32561 6.44920 6.49940 6.60213 6.65254 6.67176 6.75362 6.90617 6.99302 7.19738 7.40636 7.70372 7.90057 8.43170 8.58286 8.89614 9.47606 10.97014 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.002023 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.449232 B =13840.586671 C =13947.435301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.084 0.916 4 O -0.356 6.356 5 C 0.067 3.933 6 C -0.080 4.080 7 C -0.080 4.080 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.507 3.493 14 O -0.526 6.526 15 N -0.720 5.720 16 C 0.143 3.857 17 C 0.028 3.972 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.513 4.513 21 H 0.077 0.923 22 C 0.075 3.925 23 N -0.890 5.890 24 Si 0.886 3.114 25 H -0.286 1.286 26 H -0.305 1.305 27 H -0.249 1.249 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.395 0.605 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.029 0.971 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 8.310 -27.939 29.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.102 0.898 4 O -0.274 6.274 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.132 4.132 13 C 0.291 3.709 14 O -0.402 6.402 15 N -0.373 5.373 16 C 0.021 3.979 17 C 0.027 3.973 18 C -0.200 4.200 19 C -0.204 4.204 20 C -0.550 4.550 21 H 0.095 0.905 22 C -0.128 4.128 23 N -0.527 5.527 24 Si 0.718 3.282 25 H -0.214 1.214 26 H -0.234 1.234 27 H -0.176 1.176 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.048 0.952 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.629 7.369 -27.809 28.889 hybrid contribution -1.148 1.352 0.331 1.804 sum -3.777 8.721 -27.478 29.075 Atomic orbital electron populations 1.22240 0.93789 1.03894 1.02895 1.21926 0.94931 0.96293 0.85908 0.89846 1.88028 1.86580 1.33995 1.18798 1.22524 0.99501 0.92881 0.86124 1.20465 1.03501 0.96965 0.90788 1.19771 0.94012 0.98008 0.96229 1.21112 0.98717 0.98762 0.94710 1.21161 0.97460 0.97341 0.97828 1.21178 0.93519 1.00076 0.99500 1.21178 0.99115 0.98543 0.94857 1.21152 0.97043 0.97094 0.97925 1.20242 0.81122 0.85236 0.84336 1.90704 1.37180 1.25772 1.86559 1.46252 1.53250 1.32025 1.05812 1.21527 0.98739 0.95776 0.81856 1.18731 0.91682 0.93120 0.93790 1.22298 1.00170 0.97534 0.99956 1.22360 0.98673 1.00874 0.98521 1.20709 1.31606 1.14792 0.87940 0.90513 1.24984 0.96133 0.95881 0.95805 1.69953 1.39209 1.44803 0.98717 0.87288 0.82779 0.82112 0.75975 1.21362 1.23410 1.17552 0.90841 0.91538 0.90963 0.93083 0.93126 0.89907 0.89735 0.85927 0.86056 0.86165 0.85999 0.85809 0.76980 0.91879 0.91828 0.95989 0.92491 0.93369 0.92729 0.94037 0.95216 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.42 37.16 0.35 -1.35 16 2 C 0.07 0.88 3.14 -27.88 -0.09 0.80 16 3 H 0.08 0.84 7.79 -51.93 -0.40 0.44 16 4 O -0.36 -4.83 9.52 -55.14 -0.52 -5.35 16 5 C 0.07 0.66 5.73 37.16 0.21 0.87 16 6 C -0.08 -0.73 5.72 -27.89 -0.16 -0.89 16 7 C -0.08 -0.68 5.13 -104.62 -0.54 -1.22 16 8 C -0.12 -0.89 9.70 -39.58 -0.38 -1.27 16 9 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 10 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 11 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 12 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 13 C 0.51 8.47 7.23 -10.99 -0.08 8.39 16 14 O -0.53 -11.22 16.50 -14.35 -0.24 -11.46 16 15 N -0.72 -11.64 4.90 -60.30 -0.30 -11.93 16 16 C 0.14 2.86 4.49 -4.04 -0.02 2.84 16 17 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 18 C -0.14 -2.83 7.53 37.16 0.28 -2.55 16 19 C -0.15 -2.92 7.52 37.16 0.28 -2.64 16 20 C -0.51 -13.66 8.62 -34.44 -0.30 -13.96 16 21 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 22 C 0.07 2.06 5.32 -17.82 -0.09 1.97 16 23 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 24 Si 0.89 20.86 22.79 -169.99 -3.87 16.99 16 25 H -0.29 -6.72 7.10 56.52 0.40 -6.32 16 26 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.25 -5.30 4.65 56.52 0.26 -5.04 16 28 H 0.07 0.64 7.56 -51.93 -0.39 0.25 16 29 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.05 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.40 5.38 5.68 -40.82 -0.23 5.15 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 44 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 45 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 48 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -32.57 385.26 -8.63 -41.20 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.09 Total: 4.03 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.19 Total: -13.58 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.48 Total: -37.64 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.76 Total: -16.81 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -3.87 Total: 16.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.57 -8.63 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045917.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.421 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds