Wall clock time and date at job start Tue Mar 31 2020 13:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.46924 * 2 1 4 4 O 1.42900 * 109.46913 * 240.00734 * 2 1 3 5 5 C 1.42902 * 114.00281 * 89.99796 * 4 2 1 6 6 C 1.52995 * 109.46958 * 180.02562 * 5 4 2 7 7 C 1.50700 * 109.47172 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00168 * 269.72856 * 7 6 5 9 9 C 1.38236 * 119.99902 * 179.76441 * 8 7 6 10 10 C 1.38232 * 120.00269 * 0.48101 * 9 8 7 11 11 C 1.38237 * 119.99810 * 359.79330 * 10 9 8 12 12 C 1.38239 * 120.00247 * 359.95190 * 11 10 9 13 13 C 1.50695 * 109.47324 * 120.00846 * 2 1 3 14 14 O 1.21273 * 120.00414 * 119.99800 * 13 2 1 15 15 N 1.34780 * 119.99880 * 299.99853 * 13 2 1 16 16 C 1.46497 * 120.00245 * 180.02562 * 15 13 2 17 17 C 1.53004 * 109.46932 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47271 * 299.99915 * 17 16 15 19 19 C 1.52998 * 109.47321 * 60.00256 * 17 16 15 20 20 C 1.50705 * 109.46549 * 179.97438 * 17 16 15 21 21 H 1.07999 * 120.00399 * 1.35004 * 20 17 16 22 22 C 1.37875 * 119.99477 * 181.34654 * 20 17 16 23 23 N 1.31519 * 119.99976 * 193.98262 * 22 20 17 24 24 Si 1.86803 * 120.00394 * 13.97782 * 22 20 17 25 25 H 1.48493 * 109.46839 * 84.54634 * 24 22 20 26 26 H 1.48496 * 109.47312 * 204.54796 * 24 22 20 27 27 H 1.48495 * 109.46960 * 324.54776 * 24 22 20 28 28 H 1.08997 * 109.46699 * 299.99536 * 1 2 3 29 29 H 1.08996 * 109.47065 * 59.99878 * 1 2 3 30 30 H 1.09000 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47127 * 60.00180 * 5 4 2 32 32 H 1.09001 * 109.46835 * 300.00033 * 5 4 2 33 33 H 1.08999 * 109.47566 * 59.99996 * 6 5 4 34 34 H 1.09001 * 109.47319 * 299.99669 * 6 5 4 35 35 H 1.07996 * 119.99677 * 359.97438 * 8 7 6 36 36 H 1.08007 * 119.99838 * 180.25276 * 9 8 7 37 37 H 1.08002 * 120.00241 * 179.76935 * 10 9 8 38 38 H 1.07997 * 119.99953 * 179.97438 * 11 10 9 39 39 H 1.07990 * 120.00111 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99941 * 359.97438 * 15 13 2 41 41 H 1.09001 * 109.46749 * 299.99982 * 16 15 13 42 42 H 1.08995 * 109.47203 * 59.99966 * 16 15 13 43 43 H 1.08996 * 109.46957 * 69.37015 * 18 17 16 44 44 H 1.08997 * 109.47121 * 189.37385 * 18 17 16 45 45 H 1.08999 * 109.47167 * 309.37169 * 18 17 16 46 46 H 1.09006 * 109.47137 * 59.99743 * 19 17 16 47 47 H 1.08997 * 109.46913 * 179.97438 * 19 17 16 48 48 H 1.08996 * 109.46767 * 300.00108 * 19 17 16 49 49 H 0.97000 * 120.00132 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.2001 0.1832 -2.2941 6 6 2.7078 -0.6405 -3.4793 7 6 2.9127 0.2630 -4.6679 8 6 1.8796 0.4743 -5.5617 9 6 2.0661 1.3069 -6.6493 10 6 3.2887 1.9203 -6.8487 11 6 4.3236 1.7045 -5.9580 12 6 4.1356 0.8761 -4.8674 13 6 2.0325 -0.7106 1.2303 14 8 2.7297 -1.6966 1.1190 15 7 1.7069 -0.2502 2.4545 16 6 2.1957 -0.9406 3.6506 17 6 1.6861 -0.2191 4.8999 18 6 2.1960 1.2234 4.8995 19 6 0.1561 -0.2192 4.9005 20 6 2.1885 -0.9297 6.1303 21 1 2.8269 -1.7952 6.0312 22 6 1.8329 -0.4750 7.3824 23 7 2.4749 -0.9072 8.4457 24 14 0.4395 0.7552 7.5685 25 1 -0.8569 0.0322 7.6087 26 1 0.6192 1.5197 8.8288 27 1 0.4487 1.6915 6.4160 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 2.9320 0.9515 -2.0451 32 1 1.2538 0.6549 -2.5588 33 1 1.9756 -1.4086 -3.7283 34 1 3.6541 -1.1126 -3.2149 35 1 0.9258 -0.0084 -5.4084 36 1 1.2576 1.4752 -7.3455 37 1 3.4355 2.5679 -7.7005 38 1 5.2789 2.1834 -6.1139 39 1 4.9442 0.7072 -4.1718 40 1 1.1495 0.5387 2.5436 41 1 1.8327 -1.9684 3.6506 42 1 3.2856 -0.9402 3.6504 43 1 1.7023 1.7830 4.1051 44 1 1.9761 1.6868 5.8612 45 1 3.2730 1.2280 4.7318 46 1 -0.2072 -1.2469 4.9008 47 1 -0.2068 0.2944 5.7907 48 1 -0.2075 0.2944 4.0106 49 1 2.2246 -0.5875 9.3267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458045917.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:41 Heat of formation + Delta-G solvation = -75.809242 kcal Electronic energy + Delta-G solvation = -26246.802972 eV Core-core repulsion = 22559.284438 eV Total energy + Delta-G solvation = -3687.518534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10633 -40.22084 -39.01854 -38.11666 -35.11291 -34.57931 -33.55800 -32.06628 -31.75971 -29.32161 -28.02109 -27.69481 -26.97837 -25.20139 -24.14835 -23.44876 -21.90470 -21.38610 -20.96584 -18.54430 -18.14546 -17.97980 -17.48544 -17.06049 -16.93097 -16.47296 -16.23606 -15.84892 -15.64400 -15.45522 -14.95921 -14.72901 -14.61532 -14.27787 -14.25857 -14.01210 -13.96811 -13.74448 -13.73135 -13.55357 -13.24145 -12.93798 -12.90095 -12.38876 -12.36115 -12.19328 -12.06615 -11.94620 -11.93360 -11.80158 -11.75731 -11.09513 -10.95586 -10.61636 -10.49283 -10.34796 -10.02996 -9.80906 -9.63308 -8.29384 -6.31433 0.41778 0.51113 1.37282 1.39051 1.52335 1.61128 1.92028 2.35704 2.78768 3.01609 3.06717 3.69956 3.88274 3.94445 3.96143 4.04481 4.09004 4.18949 4.21741 4.29623 4.32569 4.33310 4.41836 4.45348 4.62669 4.65784 4.69390 4.75724 4.82162 4.84043 4.87142 4.93601 4.94939 4.99041 5.06926 5.17444 5.18884 5.19823 5.23444 5.41882 5.53395 5.58837 5.64567 5.72327 5.72379 5.80626 6.10620 6.13283 6.30549 6.63546 6.73569 7.28841 7.33332 8.87800 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.002023 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.449232 B =13840.586671 C =13947.435301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.116 0.884 4 O -0.387 6.387 5 C 0.066 3.934 6 C -0.076 4.076 7 C -0.091 4.091 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.130 4.130 13 C 0.503 3.497 14 O -0.582 6.582 15 N -0.704 5.704 16 C 0.158 3.842 17 C 0.027 3.973 18 C -0.141 4.141 19 C -0.147 4.147 20 C -0.518 4.518 21 H 0.024 0.976 22 C 0.013 3.987 23 N -0.947 5.947 24 Si 0.947 3.053 25 H -0.282 1.282 26 H -0.316 1.316 27 H -0.200 1.200 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.414 0.586 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.039 0.961 46 H 0.045 0.955 47 H 0.036 0.964 48 H 0.078 0.922 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 11.785 -30.861 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.133 0.867 4 O -0.306 6.306 5 C -0.010 4.010 6 C -0.113 4.113 7 C -0.091 4.091 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.148 4.148 13 C 0.289 3.711 14 O -0.461 6.461 15 N -0.359 5.359 16 C 0.034 3.966 17 C 0.026 3.974 18 C -0.199 4.199 19 C -0.204 4.204 20 C -0.556 4.556 21 H 0.043 0.957 22 C -0.184 4.184 23 N -0.586 5.586 24 Si 0.776 3.224 25 H -0.209 1.209 26 H -0.246 1.246 27 H -0.123 1.123 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.252 0.748 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.096 0.904 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.311 10.881 -30.779 33.075 hybrid contribution -0.187 0.154 1.158 1.183 sum -5.498 11.035 -29.622 32.085 Atomic orbital electron populations 1.22257 0.91344 1.03554 1.05168 1.21988 0.96523 0.96560 0.83362 0.86662 1.88001 1.86967 1.35797 1.19851 1.22676 1.00685 0.92580 0.85065 1.20402 1.02703 0.97117 0.91123 1.19758 0.94580 0.98423 0.96352 1.21314 0.99012 0.99026 0.94797 1.21466 0.98171 0.96807 0.97856 1.21503 0.93324 1.00053 0.99903 1.21432 1.00099 0.98378 0.94624 1.21300 0.97172 0.97722 0.98608 1.21188 0.79811 0.84543 0.85536 1.90685 1.39648 1.28422 1.87356 1.45956 1.53154 1.32169 1.04584 1.21037 0.97219 0.95076 0.83294 1.18667 0.93395 0.93790 0.91550 1.22225 1.00325 0.96234 1.01088 1.22297 0.96400 1.01213 1.00481 1.21026 1.30445 1.13511 0.90661 0.95718 1.25921 0.98788 0.98519 0.95178 1.70125 1.41609 1.47463 0.99409 0.86302 0.78700 0.80342 0.77061 1.20907 1.24604 1.12330 0.88926 0.88897 0.92639 0.92688 0.91022 0.89966 0.91190 0.84792 0.84046 0.84144 0.84515 0.85776 0.74819 0.94119 0.94321 0.91160 0.93537 0.94164 0.93570 0.94608 0.90359 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.42 71.99 0.68 -1.93 16 2 C 0.08 1.68 3.14 29.85 0.09 1.77 16 3 H 0.12 1.80 7.79 -2.39 -0.02 1.79 16 4 O -0.39 -9.91 9.52 -129.94 -1.24 -11.15 16 5 C 0.07 1.17 5.73 71.98 0.41 1.58 16 6 C -0.08 -1.33 5.72 29.85 0.17 -1.16 16 7 C -0.09 -1.45 5.13 -19.86 -0.10 -1.55 16 8 C -0.12 -1.68 9.70 22.27 0.22 -1.46 16 9 C -0.13 -1.46 10.05 22.27 0.22 -1.24 16 10 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 11 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 12 C -0.13 -2.02 9.70 22.27 0.22 -1.80 16 13 C 0.50 16.13 7.23 87.66 0.63 16.76 16 14 O -0.58 -25.30 16.50 16.03 0.26 -25.03 16 15 N -0.70 -21.08 4.90 -463.07 -2.27 -23.35 16 16 C 0.16 6.31 4.49 86.38 0.39 6.70 16 17 C 0.03 1.13 0.50 -52.93 -0.03 1.10 16 18 C -0.14 -5.18 7.53 71.98 0.54 -4.63 16 19 C -0.15 -5.30 7.52 71.98 0.54 -4.76 16 20 C -0.52 -28.59 8.62 25.60 0.22 -28.37 16 21 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 22 C 0.01 0.74 5.32 84.65 0.45 1.19 16 23 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 24 Si 0.95 42.10 22.79 68.60 1.56 43.67 16 25 H -0.28 -12.29 7.10 99.48 0.71 -11.58 16 26 H -0.32 -14.59 7.11 99.48 0.71 -13.88 16 27 H -0.20 -7.32 4.65 99.48 0.46 -6.86 16 28 H 0.09 1.10 7.56 -2.39 -0.02 1.08 16 29 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 33 H 0.08 1.40 8.08 -2.39 -0.02 1.39 16 34 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.12 1.79 8.06 -2.92 -0.02 1.77 16 40 H 0.41 9.20 5.68 -92.70 -0.53 8.67 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.90 7.13 -2.39 -0.02 1.88 16 44 H 0.05 1.80 4.30 -2.39 -0.01 1.79 16 45 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 46 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 47 H 0.04 1.34 2.25 -2.39 -0.01 1.34 16 48 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 49 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -76.64 385.26 3.89 -72.75 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.16 Total: 22.18 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 5.11 Total: -20.52 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -1.97 Total: -81.89 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.97 Total: -36.18 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.56 Total: 43.67 kcal Total: -76.64 3.89 -72.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045917.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.059 kcal (2) G-P(sol) polarization free energy of solvation -76.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds