Wall clock time and date at job start Tue Mar 31 2020 12:54:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35980 * 117.00253 * 2 1
4 4 C 1.38694 * 120.00482 * 179.97438 * 3 2 1
5 5 C 1.38131 * 120.00416 * 180.27673 * 4 3 2
6 6 C 1.38702 * 119.99429 * 359.48895 * 5 4 3
7 7 O 1.35986 * 119.99744 * 180.23044 * 6 5 4
8 8 C 1.42894 * 116.99916 * 185.77017 * 7 6 5
9 9 C 1.53120 * 109.52555 * 271.12541 * 8 7 6
10 10 C 1.53037 * 109.27898 * 182.44022 * 9 8 7
11 11 N 1.46849 * 109.52296 * 59.18346 * 10 9 8
12 12 C 1.46897 * 111.00060 * 174.16425 * 11 10 9
13 13 H 1.09001 * 109.46924 * 312.47479 * 12 11 10
14 14 C 1.52997 * 109.47671 * 72.47937 * 12 11 10
15 15 C 1.52999 * 109.46990 * 192.48045 * 12 11 10
16 16 C 1.50707 * 109.47278 * 66.15716 * 15 12 11
17 17 H 1.07995 * 120.00003 * 5.02405 * 16 15 12
18 18 C 1.37878 * 120.00046 * 185.01637 * 16 15 12
19 19 N 1.31512 * 119.99854 * 0.02562 * 18 16 15
20 20 Si 1.86794 * 119.99820 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.47561 * 0.02562 * 20 18 16
22 22 H 1.48506 * 109.47232 * 120.00368 * 20 18 16
23 23 H 1.48499 * 109.47287 * 240.00350 * 20 18 16
24 24 C 1.46847 * 111.19799 * 298.25688 * 11 10 9
25 25 C 1.53045 * 109.52219 * 61.74055 * 24 11 10
26 26 C 1.38693 * 120.00259 * 0.51680 * 6 5 4
27 27 C 1.38132 * 119.99892 * 359.73482 * 26 6 5
28 28 H 1.08996 * 109.47249 * 299.99912 * 1 2 3
29 29 H 1.09005 * 109.47190 * 60.00139 * 1 2 3
30 30 H 1.09003 * 109.47319 * 179.97438 * 1 2 3
31 31 H 1.08006 * 119.99519 * 0.02562 * 4 3 2
32 32 H 1.07996 * 120.00097 * 179.72851 * 5 4 3
33 33 H 1.08997 * 109.52614 * 31.32220 * 8 7 6
34 34 H 1.08992 * 109.50565 * 302.38286 * 9 8 7
35 35 H 1.09000 * 109.49756 * 62.50172 * 9 8 7
36 36 H 1.09004 * 109.46487 * 299.16631 * 10 9 8
37 37 H 1.09000 * 109.46208 * 179.19492 * 10 9 8
38 38 H 1.09003 * 109.47001 * 300.00150 * 14 12 11
39 39 H 1.08991 * 109.47174 * 59.99818 * 14 12 11
40 40 H 1.08995 * 109.47426 * 180.02562 * 14 12 11
41 41 H 1.08997 * 109.47255 * 186.15519 * 15 12 11
42 42 H 1.08994 * 109.47169 * 306.16194 * 15 12 11
43 43 H 0.97005 * 119.99731 * 179.97438 * 19 18 16
44 44 H 1.09005 * 109.46354 * 301.72615 * 24 11 10
45 45 H 1.08996 * 109.46775 * 181.75544 * 24 11 10
46 46 H 1.09002 * 109.50083 * 180.88407 * 25 24 11
47 47 H 1.08996 * 109.50299 * 60.76861 * 25 24 11
48 48 H 1.07996 * 120.00425 * 179.72180 * 26 6 5
49 49 H 1.08004 * 120.00112 * 179.97438 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2116 0.0000
4 6 3.4314 1.2842 0.0005
5 6 4.0585 2.5149 0.0063
6 6 3.3031 3.6781 0.0009
7 8 3.9204 4.8898 0.0018
8 6 3.0857 6.0431 0.1240
9 6 2.6413 6.5030 -1.2673
10 6 1.7982 7.7732 -1.1342
11 7 2.5917 8.8229 -0.4824
12 6 1.8627 10.0980 -0.4622
13 1 1.4533 10.2982 -1.4524
14 6 0.7222 10.0175 0.5545
15 6 2.8185 11.2258 -0.0681
16 6 3.8558 11.4051 -1.1465
17 1 3.7884 10.8343 -2.0608
18 6 4.8908 12.2979 -0.9659
19 7 4.9731 12.9927 0.1477
20 14 6.1761 12.5206 -2.3029
21 1 5.8591 11.6296 -3.4479
22 1 6.1747 13.9334 -2.7606
23 1 7.5162 12.1763 -1.7637
24 6 2.9899 8.4229 0.8733
25 6 3.8686 7.1720 0.8002
26 6 1.9180 3.6056 0.0004
27 6 1.2909 2.3748 -0.0001
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 4.0196 0.3784 0.0005
32 1 5.1370 2.5714 0.0112
33 1 2.2098 5.7969 0.7243
34 1 3.5189 6.7112 -1.8792
35 1 2.0470 5.7192 -1.7369
36 1 0.9137 7.5608 -0.5336
37 1 1.4922 8.1113 -2.1242
38 1 0.0412 9.2140 0.2737
39 1 1.1315 9.8174 1.5446
40 1 0.1809 10.9634 0.5691
41 1 2.2570 12.1521 0.0535
42 1 3.3107 10.9733 0.8710
43 1 5.7015 13.6206 0.2748
44 1 2.0998 8.2075 1.4646
45 1 3.5493 9.2328 1.3414
46 1 4.1510 6.8663 1.8076
47 1 4.7655 7.3907 0.2208
48 1 1.3298 4.5113 0.0007
49 1 0.2124 2.3183 0.0000
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000568602375.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:34
Heat of formation + Delta-G solvation = -49.392201 kcal
Electronic energy + Delta-G solvation = -27129.034871 eV
Core-core repulsion = 23442.661866 eV
Total energy + Delta-G solvation = -3686.373005 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.70318 -39.60397 -38.37308 -36.51376 -34.14918 -32.32513 -31.39140 -30.71810
-29.78045 -28.89656 -27.35488 -27.29166 -24.40027 -23.21066 -23.13372 -22.29232
-21.81460 -20.03036 -18.91372 -18.48936 -17.77673 -16.68667 -16.17022 -16.00087
-15.66554 -15.13854 -14.98454 -14.77006 -14.56457 -14.20387 -14.01513 -13.79165
-13.46361 -13.27676 -13.18228 -12.84330 -12.63757 -12.31254 -12.14829 -12.00994
-11.87390 -11.72928 -11.56640 -11.34336 -11.10472 -11.01627 -10.85925 -10.62708
-10.53606 -10.34406 -10.25433 -10.14332 -9.85060 -9.27428 -9.19724 -8.96275
-8.26126 -7.85557 -7.52136 -5.88890 -3.86409 1.05651 1.30990 3.01949
3.23209 3.38796 3.46495 3.51847 3.56004 4.43634 4.51994 4.57041
4.57809 4.78752 4.82036 4.82757 4.87909 4.99091 5.10435 5.14883
5.22813 5.28645 5.41373 5.48428 5.53831 5.58775 5.68446 5.72541
5.74904 5.82671 5.88716 5.94267 5.98612 6.01328 6.08480 6.14664
6.18868 6.31118 6.37240 6.41869 6.50970 6.56456 6.67590 6.96393
7.10829 7.46258 7.50248 7.64257 7.87654 7.99895 8.11641 8.56900
9.18746 9.75239 11.23057
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.022185 B = 0.002598 C = 0.002444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1261.805985 B =10773.772284 C =11455.336633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.320 6.320
3 C 0.081 3.919
4 C -0.111 4.111
5 C -0.117 4.117
6 C 0.106 3.894
7 O -0.307 6.307
8 C 0.088 3.912
9 C -0.137 4.137
10 C 0.057 3.943
11 N -0.510 5.510
12 C 0.087 3.913
13 H 0.069 0.931
14 C -0.184 4.184
15 C 0.029 3.971
16 C -0.488 4.488
17 H 0.059 0.941
18 C 0.050 3.950
19 N -0.904 5.904
20 Si 0.889 3.111
21 H -0.273 1.273
22 H -0.288 1.288
23 H -0.287 1.287
24 C 0.061 3.939
25 C -0.111 4.111
26 C -0.173 4.173
27 C -0.166 4.166
28 H 0.053 0.947
29 H 0.053 0.947
30 H 0.098 0.902
31 H 0.136 0.864
32 H 0.138 0.862
33 H 0.066 0.934
34 H 0.085 0.915
35 H 0.063 0.937
36 H 0.024 0.976
37 H 0.075 0.925
38 H 0.038 0.962
39 H 0.053 0.947
40 H 0.056 0.944
41 H 0.015 0.985
42 H 0.023 0.977
43 H 0.257 0.743
44 H 0.026 0.974
45 H 0.096 0.904
46 H 0.069 0.931
47 H 0.086 0.914
48 H 0.133 0.867
49 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.466 -23.015 1.563 24.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.235 6.235
3 C 0.036 3.964
4 C -0.130 4.130
5 C -0.136 4.136
6 C 0.061 3.939
7 O -0.221 6.221
8 C 0.032 3.968
9 C -0.175 4.175
10 C -0.071 4.071
11 N -0.234 5.234
12 C -0.021 4.021
13 H 0.088 0.912
14 C -0.243 4.243
15 C -0.008 4.008
16 C -0.526 4.526
17 H 0.077 0.923
18 C -0.149 4.149
19 N -0.545 5.545
20 Si 0.718 3.282
21 H -0.198 1.198
22 H -0.215 1.215
23 H -0.213 1.213
24 C -0.067 4.067
25 C -0.149 4.149
26 C -0.191 4.191
27 C -0.185 4.185
28 H 0.072 0.928
29 H 0.072 0.928
30 H 0.116 0.884
31 H 0.153 0.847
32 H 0.156 0.844
33 H 0.084 0.916
34 H 0.103 0.897
35 H 0.082 0.918
36 H 0.042 0.958
37 H 0.094 0.906
38 H 0.057 0.943
39 H 0.072 0.928
40 H 0.075 0.925
41 H 0.033 0.967
42 H 0.042 0.958
43 H 0.066 0.934
44 H 0.044 0.956
45 H 0.114 0.886
46 H 0.087 0.913
47 H 0.105 0.895
48 H 0.151 0.849
49 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -8.647 -22.949 1.343 24.560
hybrid contribution -0.538 0.281 -0.213 0.643
sum -9.185 -22.667 1.130 24.484
Atomic orbital electron populations
1.23013 0.78700 1.03736 1.01244 1.86056 1.21079 1.26825 1.89504
1.18879 0.92315 0.84124 1.01039 1.20210 0.91285 0.97828 1.03652
1.20285 1.00352 0.89049 1.03878 1.18977 0.90918 0.86113 0.97929
1.86172 1.36433 1.11831 1.87644 1.22628 0.93309 0.83697 0.97193
1.22112 1.01538 0.97069 0.96740 1.22009 0.93834 0.91595 0.99671
1.62050 1.41428 1.01995 1.17893 1.21925 0.92410 0.90232 0.97498
0.91237 1.22532 0.99756 1.00959 1.01060 1.19206 0.93302 0.90818
0.97435 1.21168 1.08355 1.20673 1.02436 0.92305 1.24991 0.98070
0.96298 0.95524 1.69970 1.32421 1.26794 1.25273 0.86583 0.81781
0.77508 0.82377 1.19811 1.21459 1.21291 1.22053 0.97384 0.96702
0.90597 1.21690 1.00179 0.92531 1.00463 1.21143 0.93750 0.98394
1.05846 1.21020 0.99884 0.91710 1.05883 0.92819 0.92796 0.88394
0.84664 0.84416 0.91598 0.89668 0.91850 0.95822 0.90640 0.94308
0.92755 0.92462 0.96655 0.95848 0.93387 0.95636 0.88594 0.91277
0.89534 0.84935 0.85422
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.17 9.81 101.05 0.99 1.17 16
2 O -0.32 -3.19 10.50 -19.68 -0.21 -3.40 16
3 C 0.08 0.87 6.69 -39.24 -0.26 0.61 16
4 C -0.11 -1.16 9.98 -39.45 -0.39 -1.56 16
5 C -0.12 -1.32 9.98 -39.45 -0.39 -1.71 16
6 C 0.11 1.34 6.64 -39.24 -0.26 1.08 16
7 O -0.31 -4.33 9.79 -19.70 -0.19 -4.52 16
8 C 0.09 1.19 2.15 -26.61 -0.06 1.13 16
9 C -0.14 -1.87 5.49 -26.65 -0.15 -2.02 16
10 C 0.06 0.85 5.17 -3.83 -0.02 0.83 16
11 N -0.51 -9.27 4.33 -226.69 -0.98 -10.25 16
12 C 0.09 1.71 2.23 -67.72 -0.15 1.56 16
13 H 0.07 1.39 7.94 -51.93 -0.41 0.98 16
14 C -0.18 -3.02 8.41 37.16 0.31 -2.71 16
15 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16
16 C -0.49 -13.47 8.86 -34.44 -0.31 -13.78 16
17 H 0.06 1.63 7.75 -52.49 -0.41 1.23 16
18 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16
19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16
20 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16
21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
24 C 0.06 1.01 4.48 -3.83 -0.02 1.00 16
25 C -0.11 -1.66 5.75 -26.65 -0.15 -1.82 16
26 C -0.17 -1.96 8.46 -39.45 -0.33 -2.30 16
27 C -0.17 -1.70 9.03 -39.45 -0.36 -2.06 16
28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16
29 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16
30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
31 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16
32 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16
33 H 0.07 0.82 6.07 -51.93 -0.32 0.51 16
34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
35 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16
36 H 0.02 0.32 6.96 -51.93 -0.36 -0.04 16
37 H 0.08 1.11 7.99 -51.93 -0.41 0.70 16
38 H 0.04 0.56 6.91 -51.93 -0.36 0.20 16
39 H 0.05 0.88 6.45 -51.93 -0.33 0.55 16
40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.02 0.61 6.28 -51.93 -0.33 0.29 16
43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
44 H 0.03 0.39 6.57 -51.93 -0.34 0.05 16
45 H 0.10 1.85 6.22 -51.93 -0.32 1.53 16
46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
47 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16
48 H 0.13 1.40 5.55 -52.49 -0.29 1.11 16
49 H 0.13 1.02 6.29 -52.48 -0.33 0.69 16
LS Contribution 378.69 15.07 5.71 5.71
Total: -1.00 -30.87 378.69 -9.64 -40.51
By element:
Atomic # 1 Polarization: 7.73 SS G_CDS: -7.91 Total: -0.18 kcal
Atomic # 6 Polarization: -16.87 SS G_CDS: -1.77 Total: -18.63 kcal
Atomic # 7 Polarization: -36.25 SS G_CDS: -0.25 Total: -36.50 kcal
Atomic # 8 Polarization: -7.52 SS G_CDS: -0.40 Total: -7.92 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -30.87 -9.64 -40.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000568602375.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.883 kcal
(2) G-P(sol) polarization free energy of solvation -30.874 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds