Wall clock time and date at job start Tue Mar 31 2020 12:54:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35980 * 117.00253 * 2 1
4 4 C 1.38694 * 120.00482 * 179.97438 * 3 2 1
5 5 C 1.38131 * 120.00416 * 180.27673 * 4 3 2
6 6 C 1.38702 * 119.99429 * 359.48895 * 5 4 3
7 7 O 1.35986 * 119.99744 * 180.23044 * 6 5 4
8 8 C 1.42894 * 116.99916 * 185.77017 * 7 6 5
9 9 C 1.53120 * 109.52555 * 271.12541 * 8 7 6
10 10 C 1.53037 * 109.27898 * 182.44022 * 9 8 7
11 11 N 1.46849 * 109.52296 * 59.18346 * 10 9 8
12 12 C 1.46897 * 111.00060 * 174.16425 * 11 10 9
13 13 H 1.09001 * 109.46924 * 312.47479 * 12 11 10
14 14 C 1.52997 * 109.47671 * 72.47937 * 12 11 10
15 15 C 1.52999 * 109.46990 * 192.48045 * 12 11 10
16 16 C 1.50707 * 109.47278 * 66.15716 * 15 12 11
17 17 H 1.07995 * 120.00003 * 5.02405 * 16 15 12
18 18 C 1.37878 * 120.00046 * 185.01637 * 16 15 12
19 19 N 1.31512 * 119.99854 * 0.02562 * 18 16 15
20 20 Si 1.86794 * 119.99820 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.47561 * 0.02562 * 20 18 16
22 22 H 1.48506 * 109.47232 * 120.00368 * 20 18 16
23 23 H 1.48499 * 109.47287 * 240.00350 * 20 18 16
24 24 C 1.46847 * 111.19799 * 298.25688 * 11 10 9
25 25 C 1.53045 * 109.52219 * 61.74055 * 24 11 10
26 26 C 1.38693 * 120.00259 * 0.51680 * 6 5 4
27 27 C 1.38132 * 119.99892 * 359.73482 * 26 6 5
28 28 H 1.08996 * 109.47249 * 299.99912 * 1 2 3
29 29 H 1.09005 * 109.47190 * 60.00139 * 1 2 3
30 30 H 1.09003 * 109.47319 * 179.97438 * 1 2 3
31 31 H 1.08006 * 119.99519 * 0.02562 * 4 3 2
32 32 H 1.07996 * 120.00097 * 179.72851 * 5 4 3
33 33 H 1.08997 * 109.52614 * 31.32220 * 8 7 6
34 34 H 1.08992 * 109.50565 * 302.38286 * 9 8 7
35 35 H 1.09000 * 109.49756 * 62.50172 * 9 8 7
36 36 H 1.09004 * 109.46487 * 299.16631 * 10 9 8
37 37 H 1.09000 * 109.46208 * 179.19492 * 10 9 8
38 38 H 1.09003 * 109.47001 * 300.00150 * 14 12 11
39 39 H 1.08991 * 109.47174 * 59.99818 * 14 12 11
40 40 H 1.08995 * 109.47426 * 180.02562 * 14 12 11
41 41 H 1.08997 * 109.47255 * 186.15519 * 15 12 11
42 42 H 1.08994 * 109.47169 * 306.16194 * 15 12 11
43 43 H 0.97005 * 119.99731 * 179.97438 * 19 18 16
44 44 H 1.09005 * 109.46354 * 301.72615 * 24 11 10
45 45 H 1.08996 * 109.46775 * 181.75544 * 24 11 10
46 46 H 1.09002 * 109.50083 * 180.88407 * 25 24 11
47 47 H 1.08996 * 109.50299 * 60.76861 * 25 24 11
48 48 H 1.07996 * 120.00425 * 179.72180 * 26 6 5
49 49 H 1.08004 * 120.00112 * 179.97438 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2116 0.0000
4 6 3.4314 1.2842 0.0005
5 6 4.0585 2.5149 0.0063
6 6 3.3031 3.6781 0.0009
7 8 3.9204 4.8898 0.0018
8 6 3.0857 6.0431 0.1240
9 6 2.6413 6.5030 -1.2673
10 6 1.7982 7.7732 -1.1342
11 7 2.5917 8.8229 -0.4824
12 6 1.8627 10.0980 -0.4622
13 1 1.4533 10.2982 -1.4524
14 6 0.7222 10.0175 0.5545
15 6 2.8185 11.2258 -0.0681
16 6 3.8558 11.4051 -1.1465
17 1 3.7884 10.8343 -2.0608
18 6 4.8908 12.2979 -0.9659
19 7 4.9731 12.9927 0.1477
20 14 6.1761 12.5206 -2.3029
21 1 5.8591 11.6296 -3.4479
22 1 6.1747 13.9334 -2.7606
23 1 7.5162 12.1763 -1.7637
24 6 2.9899 8.4229 0.8733
25 6 3.8686 7.1720 0.8002
26 6 1.9180 3.6056 0.0004
27 6 1.2909 2.3748 -0.0001
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 4.0196 0.3784 0.0005
32 1 5.1370 2.5714 0.0112
33 1 2.2098 5.7969 0.7243
34 1 3.5189 6.7112 -1.8792
35 1 2.0470 5.7192 -1.7369
36 1 0.9137 7.5608 -0.5336
37 1 1.4922 8.1113 -2.1242
38 1 0.0412 9.2140 0.2737
39 1 1.1315 9.8174 1.5446
40 1 0.1809 10.9634 0.5691
41 1 2.2570 12.1521 0.0535
42 1 3.3107 10.9733 0.8710
43 1 5.7015 13.6206 0.2748
44 1 2.0998 8.2075 1.4646
45 1 3.5493 9.2328 1.3414
46 1 4.1510 6.8663 1.8076
47 1 4.7655 7.3907 0.2208
48 1 1.3298 4.5113 0.0007
49 1 0.2124 2.3183 0.0000
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000568602375.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:54:33
Heat of formation + Delta-G solvation = -67.328018 kcal
Electronic energy + Delta-G solvation = -27129.812626 eV
Core-core repulsion = 23442.661866 eV
Total energy + Delta-G solvation = -3687.150761 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.60154 -40.56940 -39.50911 -37.41943 -35.67868 -34.22336 -32.21963 -31.93375
-30.96398 -29.96594 -29.06529 -27.93210 -25.68382 -24.88089 -24.33252 -23.30927
-22.75299 -21.34339 -20.20819 -19.39958 -18.62981 -18.34407 -17.54677 -16.96000
-16.63825 -16.52272 -16.07010 -15.93787 -15.75571 -15.58615 -14.96368 -14.86636
-14.63312 -14.46654 -14.23299 -14.04192 -13.73247 -13.62242 -13.45988 -13.24620
-13.07897 -12.86995 -12.82634 -12.72241 -12.57558 -12.39653 -12.28798 -12.09180
-11.84626 -11.76489 -11.55403 -11.41643 -11.07848 -11.06036 -10.89852 -10.46551
-10.06759 -8.88914 -8.69503 -8.08974 -6.12691 0.26484 0.47594 1.40499
1.42365 1.54523 2.19989 2.45612 2.47873 2.74448 3.08550 3.28030
3.67894 3.73947 3.80625 3.86183 4.02712 4.13273 4.16922 4.29340
4.32913 4.34963 4.37404 4.42231 4.47552 4.49100 4.54556 4.60951
4.64459 4.74158 4.77968 4.80285 4.91642 4.93452 4.97705 5.09149
5.13251 5.18116 5.21454 5.25654 5.30191 5.33830 5.41785 5.52289
5.61034 5.71887 5.91673 6.33774 6.37592 6.46830 6.54568 6.57298
7.00889 7.52599 9.03025
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.022185 B = 0.002598 C = 0.002444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1261.805985 B =10773.772284 C =11455.336633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.335 6.335
3 C 0.076 3.924
4 C -0.118 4.118
5 C -0.124 4.124
6 C 0.081 3.919
7 O -0.323 6.323
8 C 0.095 3.905
9 C -0.129 4.129
10 C 0.060 3.940
11 N -0.536 5.536
12 C 0.096 3.904
13 H 0.065 0.935
14 C -0.174 4.174
15 C 0.034 3.966
16 C -0.495 4.495
17 H 0.054 0.946
18 C -0.005 4.005
19 N -0.939 5.939
20 Si 0.953 3.047
21 H -0.267 1.267
22 H -0.282 1.282
23 H -0.285 1.285
24 C 0.067 3.933
25 C -0.107 4.107
26 C -0.175 4.175
27 C -0.167 4.167
28 H 0.062 0.938
29 H 0.062 0.938
30 H 0.118 0.882
31 H 0.150 0.850
32 H 0.144 0.856
33 H 0.085 0.915
34 H 0.061 0.939
35 H 0.085 0.915
36 H 0.047 0.953
37 H 0.076 0.924
38 H 0.067 0.933
39 H 0.053 0.947
40 H 0.056 0.944
41 H -0.009 1.009
42 H 0.001 0.999
43 H 0.258 0.742
44 H 0.047 0.953
45 H 0.060 0.940
46 H 0.082 0.918
47 H 0.059 0.941
48 H 0.142 0.858
49 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.135 -25.308 1.011 27.668
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.250 6.250
3 C 0.031 3.969
4 C -0.136 4.136
5 C -0.142 4.142
6 C 0.036 3.964
7 O -0.238 6.238
8 C 0.039 3.961
9 C -0.167 4.167
10 C -0.067 4.067
11 N -0.260 5.260
12 C -0.012 4.012
13 H 0.084 0.916
14 C -0.233 4.233
15 C -0.003 4.003
16 C -0.533 4.533
17 H 0.072 0.928
18 C -0.201 4.201
19 N -0.581 5.581
20 Si 0.779 3.221
21 H -0.191 1.191
22 H -0.208 1.208
23 H -0.211 1.211
24 C -0.061 4.061
25 C -0.145 4.145
26 C -0.194 4.194
27 C -0.185 4.185
28 H 0.081 0.919
29 H 0.081 0.919
30 H 0.136 0.864
31 H 0.168 0.832
32 H 0.162 0.838
33 H 0.103 0.897
34 H 0.080 0.920
35 H 0.103 0.897
36 H 0.065 0.935
37 H 0.094 0.906
38 H 0.086 0.914
39 H 0.072 0.928
40 H 0.076 0.924
41 H 0.009 0.991
42 H 0.019 0.981
43 H 0.066 0.934
44 H 0.065 0.935
45 H 0.078 0.922
46 H 0.100 0.900
47 H 0.078 0.922
48 H 0.160 0.840
49 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -10.332 -25.263 0.782 27.305
hybrid contribution -0.058 0.889 -0.030 0.892
sum -10.390 -24.374 0.752 26.506
Atomic orbital electron populations
1.23308 0.76764 1.05467 1.02064 1.86046 1.23144 1.26462 1.89301
1.19082 0.92607 0.84749 1.00415 1.20432 0.91764 0.98081 1.03328
1.20454 1.00858 0.89125 1.03797 1.19209 0.91800 0.85682 0.99720
1.86135 1.37020 1.12427 1.88220 1.22475 0.93374 0.83181 0.97022
1.22035 1.00763 0.97143 0.96741 1.22041 0.94268 0.90760 0.99666
1.61897 1.42699 1.02478 1.18962 1.21600 0.92124 0.89438 0.98056
0.91649 1.22392 0.98824 1.02156 0.99901 1.19075 0.93508 0.91956
0.95760 1.21489 1.08971 1.20036 1.02808 0.92762 1.25803 1.00323
0.96287 0.97660 1.70089 1.33292 1.27632 1.27111 0.85577 0.79065
0.77637 0.79809 1.19104 1.20806 1.21102 1.21916 0.97951 0.96108
0.90112 1.21591 0.99058 0.92727 1.01075 1.21271 0.93232 0.99243
1.05605 1.21270 1.01127 0.91067 1.05077 0.91924 0.91947 0.86400
0.83185 0.83821 0.89711 0.91992 0.89671 0.93494 0.90553 0.91360
0.92827 0.92445 0.99098 0.98094 0.93354 0.93471 0.92186 0.89990
0.92185 0.84006 0.83089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.81 113.37 1.11 1.29 16
2 O -0.33 -5.89 10.50 -93.33 -0.98 -6.87 16
3 C 0.08 1.48 6.69 22.49 0.15 1.63 16
4 C -0.12 -2.28 9.98 22.35 0.22 -2.06 16
5 C -0.12 -2.66 9.98 22.36 0.22 -2.44 16
6 C 0.08 1.93 6.64 22.49 0.15 2.07 16
7 O -0.32 -8.84 9.79 -93.39 -0.91 -9.75 16
8 C 0.10 2.44 2.15 30.67 0.07 2.50 16
9 C -0.13 -3.32 5.49 30.65 0.17 -3.15 16
10 C 0.06 1.67 5.17 86.33 0.45 2.11 16
11 N -0.54 -19.26 4.33 -871.10 -3.77 -23.03 16
12 C 0.10 3.74 2.23 44.91 0.10 3.84 16
13 H 0.07 2.58 7.94 -2.39 -0.02 2.57 16
14 C -0.17 -5.43 8.41 71.98 0.61 -4.82 16
15 C 0.03 1.75 4.42 29.85 0.13 1.88 16
16 C -0.49 -28.00 8.86 25.60 0.23 -27.77 16
17 H 0.05 3.06 7.75 -2.91 -0.02 3.04 16
18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16
19 N -0.94 -57.62 13.29 21.45 0.28 -57.34 16
20 Si 0.95 45.96 29.54 68.60 2.03 47.99 16
21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16
22 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16
23 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16
24 C 0.07 2.24 4.48 86.33 0.39 2.62 16
25 C -0.11 -3.19 5.75 30.65 0.18 -3.01 16
26 C -0.17 -3.55 8.46 22.35 0.19 -3.36 16
27 C -0.17 -2.96 9.03 22.36 0.20 -2.76 16
28 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16
29 H 0.06 0.49 7.66 -2.38 -0.02 0.47 16
30 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16
32 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16
33 H 0.09 1.86 6.07 -2.39 -0.01 1.85 16
34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
35 H 0.08 1.84 7.34 -2.39 -0.02 1.82 16
36 H 0.05 1.10 6.96 -2.39 -0.02 1.08 16
37 H 0.08 2.10 7.99 -2.39 -0.02 2.08 16
38 H 0.07 1.74 6.91 -2.39 -0.02 1.72 16
39 H 0.05 1.67 6.45 -2.39 -0.02 1.66 16
40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16
42 H 0.00 0.04 6.28 -2.39 -0.02 0.03 16
43 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16
44 H 0.05 1.36 6.57 -2.38 -0.02 1.34 16
45 H 0.06 2.42 6.22 -2.39 -0.01 2.41 16
46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16
48 H 0.14 2.52 5.55 -2.91 -0.02 2.51 16
49 H 0.15 1.87 6.29 -2.91 -0.02 1.85 16
Total: -1.00 -67.90 378.69 2.59 -65.31
By element:
Atomic # 1 Polarization: 14.01 SS G_CDS: 0.93 Total: 14.94 kcal
Atomic # 6 Polarization: -36.26 SS G_CDS: 5.02 Total: -31.24 kcal
Atomic # 7 Polarization: -76.88 SS G_CDS: -3.49 Total: -80.37 kcal
Atomic # 8 Polarization: -14.73 SS G_CDS: -1.89 Total: -16.62 kcal
Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal
Total: -67.90 2.59 -65.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000568602375.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal
(2) G-P(sol) polarization free energy of solvation -67.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.921 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds