Wall clock time and date at job start Tue Mar 31 2020 12:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 116.99838 * 2 1 4 4 C 1.38737 * 120.05777 * 180.02562 * 3 2 1 5 5 C 1.38135 * 119.94672 * 179.74920 * 4 3 2 6 6 C 1.38268 * 120.05822 * 0.25569 * 5 4 3 7 7 C 1.50694 * 119.94987 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47099 * 28.13312 * 7 6 5 9 9 C 1.53007 * 109.47120 * 268.13696 * 7 6 5 10 10 N 1.46493 * 109.47568 * 148.13529 * 7 6 5 11 11 C 1.46499 * 120.00379 * 79.90424 * 10 7 6 12 12 C 1.34784 * 120.00010 * 259.90509 * 10 7 6 13 13 O 1.21281 * 119.99733 * 0.02562 * 12 10 7 14 14 C 1.50698 * 119.99988 * 180.02562 * 12 10 7 15 15 C 1.53003 * 109.46964 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46960 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.46960 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46964 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00480 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00351 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99715 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47195 * 90.00250 * 22 20 18 24 24 H 1.48501 * 109.46913 * 210.00370 * 22 20 18 25 25 H 1.48501 * 109.47052 * 330.00097 * 22 20 18 26 26 C 1.38273 * 120.10685 * 359.97438 * 6 5 4 27 27 C 1.38138 * 120.05860 * 0.02562 * 26 6 5 28 28 H 1.08994 * 109.46896 * 299.99266 * 1 2 3 29 29 H 1.08991 * 109.47255 * 59.99598 * 1 2 3 30 30 H 1.09003 * 109.46463 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.01953 * 0.02937 * 4 3 2 32 32 H 1.07997 * 119.97373 * 180.27756 * 5 4 3 33 33 H 1.08997 * 109.46945 * 59.99381 * 9 7 6 34 34 H 1.08993 * 109.47054 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.46821 * 299.99786 * 9 7 6 36 36 H 1.08994 * 109.47048 * 95.77754 * 11 10 7 37 37 H 1.08998 * 109.47382 * 215.77845 * 11 10 7 38 38 H 1.09006 * 109.46879 * 335.77950 * 11 10 7 39 39 H 1.09006 * 109.46966 * 299.99489 * 14 12 10 40 40 H 1.08994 * 109.47288 * 59.99834 * 14 12 10 41 41 H 1.08993 * 109.47005 * 299.99520 * 15 14 12 42 42 H 1.09003 * 109.47305 * 59.99430 * 15 14 12 43 43 H 1.08993 * 109.47282 * 299.99856 * 16 15 14 44 44 H 1.09005 * 109.47121 * 60.00390 * 16 15 14 45 45 H 1.09006 * 109.46735 * 299.99980 * 17 16 15 46 46 H 1.08994 * 109.47381 * 60.00240 * 17 16 15 47 47 H 0.97000 * 119.99821 * 179.97438 * 21 20 18 48 48 H 1.08001 * 119.96901 * 179.97438 * 26 6 5 49 49 H 1.07998 * 120.02764 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0058 6 6 3.3019 3.6758 -0.0051 7 6 3.9860 5.0186 -0.0114 8 1 4.9562 4.9298 -0.5002 9 6 4.1822 5.4978 1.4283 10 7 3.1592 5.9845 -0.7391 11 6 2.0116 6.6110 -0.0784 12 6 3.4544 6.2968 -2.0167 13 8 4.4042 5.7777 -2.5638 14 6 2.6043 7.2908 -2.7650 15 6 3.1508 7.4633 -4.1837 16 6 2.2873 8.4720 -4.9437 17 6 2.8342 8.6450 -6.3621 18 6 1.9841 9.6391 -7.1105 19 1 1.1381 10.1009 -6.6235 20 6 2.2864 9.9589 -8.4172 21 7 3.3163 9.3960 -9.0106 22 14 1.2322 11.1905 -9.3452 23 1 1.7767 12.5576 -9.1458 24 1 1.2428 10.8597 -10.7928 25 1 -0.1612 11.1334 -8.8346 26 6 1.9211 3.6047 0.0002 27 6 1.2915 2.3752 0.0055 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 4.0209 0.3799 -0.0014 32 1 5.1345 2.5751 -0.0107 33 1 4.7973 4.7791 1.9698 34 1 4.6774 6.4687 1.4238 35 1 3.2120 5.5865 1.9171 36 1 2.3083 7.5795 0.3240 37 1 1.2070 6.7487 -0.8008 38 1 1.6656 5.9709 0.7332 39 1 1.5777 6.9274 -2.8133 40 1 2.6262 8.2499 -2.2477 41 1 4.1773 7.8265 -4.1359 42 1 3.1285 6.5040 -4.7008 43 1 1.2609 8.1085 -4.9915 44 1 2.3093 9.4315 -4.4268 45 1 3.8606 9.0088 -6.3139 46 1 2.8126 7.6858 -6.8794 47 1 3.5287 9.6208 -9.9300 48 1 1.3342 4.5114 0.0011 49 1 0.2130 2.3202 0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588274569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:28 Heat of formation + Delta-G solvation = -63.602940 kcal Electronic energy + Delta-G solvation = -26257.864767 eV Core-core repulsion = 22570.875538 eV Total energy + Delta-G solvation = -3686.989229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75155 -39.86631 -38.04091 -35.96806 -34.86369 -32.84137 -32.14984 -31.35761 -29.67836 -29.13681 -27.53298 -27.33883 -25.71175 -23.54974 -23.00140 -22.24061 -20.85432 -19.97097 -19.06690 -18.44035 -17.13517 -16.64515 -16.38820 -16.12218 -16.05151 -15.79484 -15.23755 -14.92257 -14.42982 -14.12940 -14.02941 -13.84308 -13.66260 -13.39671 -12.94681 -12.90662 -12.76082 -12.58486 -12.44484 -12.24302 -12.17340 -11.97552 -11.61400 -11.54847 -11.33158 -11.16645 -11.01613 -10.96238 -10.50751 -10.47961 -10.37332 -9.71842 -9.58299 -9.26004 -9.19313 -8.95772 -8.83347 -8.35046 -8.28581 -5.93292 -3.95754 1.08546 1.13585 2.73497 2.86839 2.95922 3.35068 3.40999 3.44157 3.49913 4.44019 4.47126 4.50249 4.59444 4.63434 4.74986 4.79220 4.79814 4.92586 5.00814 5.08518 5.09764 5.13625 5.21046 5.29631 5.34981 5.39199 5.41440 5.43014 5.48382 5.62372 5.72009 5.81898 5.89753 5.99267 6.09342 6.17301 6.22907 6.33096 6.47678 6.50103 6.59294 6.87351 7.04814 7.08571 7.21979 7.31499 7.76433 7.92852 8.08407 8.25412 8.50091 9.12023 9.67692 11.18045 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002187 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.005397 B =12798.467149 C =13594.102963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.127 4.127 7 C 0.181 3.819 8 H 0.104 0.896 9 C -0.154 4.154 10 N -0.619 5.619 11 C 0.071 3.929 12 C 0.515 3.485 13 O -0.531 6.531 14 C -0.136 4.136 15 C -0.104 4.104 16 C -0.109 4.109 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.076 4.076 27 C -0.207 4.207 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.130 0.870 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 -15.059 27.149 31.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.088 4.088 6 C -0.129 4.129 7 C 0.077 3.923 8 H 0.122 0.878 9 C -0.212 4.212 10 N -0.353 5.353 11 C -0.072 4.072 12 C 0.304 3.696 13 O -0.406 6.406 14 C -0.176 4.176 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.558 4.558 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.094 4.094 27 C -0.225 4.225 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.766 -15.524 26.674 31.092 hybrid contribution -0.975 0.779 -0.558 1.367 sum -4.741 -14.745 26.117 30.364 Atomic orbital electron populations 1.23054 0.78362 1.03937 1.01414 1.86063 1.21422 1.27044 1.88770 1.19061 0.92422 0.84128 0.96638 1.20395 0.91364 0.98593 1.06440 1.20797 0.99939 0.90821 0.97198 1.20142 0.93969 0.95181 1.03571 1.19802 0.94865 0.84593 0.92996 0.87761 1.22111 1.02499 1.01960 0.94603 1.48001 1.30465 1.43823 1.13055 1.21937 0.88680 0.98076 0.98542 1.21116 0.85289 0.82462 0.80720 1.90694 1.29622 1.53371 1.66951 1.21817 0.99569 0.98043 0.98154 1.21460 1.00159 1.00890 0.91652 1.21641 0.97936 0.96515 0.98613 1.19098 0.96313 0.96845 0.89498 1.21281 1.12933 1.24337 0.97236 0.92777 1.25048 0.95330 0.96462 0.97774 1.69976 1.27514 1.43258 1.12714 0.86613 0.80804 0.81599 0.79077 1.20714 1.21264 1.19941 1.21026 0.94151 0.97293 0.96972 1.21225 0.99964 0.92348 1.08994 0.92695 0.92539 0.88245 0.85164 0.85185 0.91135 0.91652 0.92001 0.92222 0.90738 0.90601 0.89285 0.89178 0.91816 0.91871 0.93551 0.93509 0.96593 0.96601 0.93054 0.85266 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.16 10.50 -19.42 -0.20 -3.36 16 3 C 0.12 1.28 6.69 -39.21 -0.26 1.02 16 4 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 5 C -0.07 -0.69 9.69 -39.61 -0.38 -1.07 16 6 C -0.13 -1.31 5.01 -104.60 -0.52 -1.83 16 7 C 0.18 1.82 2.78 -69.09 -0.19 1.63 16 8 H 0.10 1.25 7.08 -51.93 -0.37 0.88 16 9 C -0.15 -1.10 8.81 37.16 0.33 -0.77 16 10 N -0.62 -6.62 2.46 -175.27 -0.43 -7.05 16 11 C 0.07 0.49 7.73 59.85 0.46 0.96 16 12 C 0.51 7.47 7.67 -10.98 -0.08 7.39 16 13 O -0.53 -9.94 15.42 5.56 0.09 -9.85 16 14 C -0.14 -1.87 4.33 -27.88 -0.12 -1.99 16 15 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 16 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 17 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.77 13.29 55.43 0.74 -27.04 16 22 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.08 -0.74 9.00 -39.60 -0.36 -1.10 16 27 C -0.21 -1.96 9.04 -39.43 -0.36 -2.32 16 28 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.38 6.71 -51.93 -0.35 0.03 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 38 H 0.08 0.41 5.09 -51.93 -0.26 0.15 16 39 H 0.09 1.06 7.41 -51.93 -0.39 0.68 16 40 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 48 H 0.13 1.05 4.59 -52.49 -0.24 0.81 16 49 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -35.55 393.06 -8.72 -44.28 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.11 Total: -3.12 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.70 Total: -16.81 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.30 Total: -34.09 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.12 Total: -13.21 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.55 -8.72 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588274569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.326 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds