Wall clock time and date at job start Tue Mar 31 2020 12:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 116.99838 * 2 1 4 4 C 1.38737 * 120.05777 * 180.02562 * 3 2 1 5 5 C 1.38135 * 119.94672 * 179.74920 * 4 3 2 6 6 C 1.38268 * 120.05822 * 0.25569 * 5 4 3 7 7 C 1.50694 * 119.94987 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47099 * 28.13312 * 7 6 5 9 9 C 1.53007 * 109.47120 * 268.13696 * 7 6 5 10 10 N 1.46493 * 109.47568 * 148.13529 * 7 6 5 11 11 C 1.46499 * 120.00379 * 79.90424 * 10 7 6 12 12 C 1.34784 * 120.00010 * 259.90509 * 10 7 6 13 13 O 1.21281 * 119.99733 * 0.02562 * 12 10 7 14 14 C 1.50698 * 119.99988 * 180.02562 * 12 10 7 15 15 C 1.53003 * 109.46964 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.46960 * 179.97438 * 15 14 12 17 17 C 1.53003 * 109.46960 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46964 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00480 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99628 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00351 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99715 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47195 * 90.00250 * 22 20 18 24 24 H 1.48501 * 109.46913 * 210.00370 * 22 20 18 25 25 H 1.48501 * 109.47052 * 330.00097 * 22 20 18 26 26 C 1.38273 * 120.10685 * 359.97438 * 6 5 4 27 27 C 1.38138 * 120.05860 * 0.02562 * 26 6 5 28 28 H 1.08994 * 109.46896 * 299.99266 * 1 2 3 29 29 H 1.08991 * 109.47255 * 59.99598 * 1 2 3 30 30 H 1.09003 * 109.46463 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.01953 * 0.02937 * 4 3 2 32 32 H 1.07997 * 119.97373 * 180.27756 * 5 4 3 33 33 H 1.08997 * 109.46945 * 59.99381 * 9 7 6 34 34 H 1.08993 * 109.47054 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.46821 * 299.99786 * 9 7 6 36 36 H 1.08994 * 109.47048 * 95.77754 * 11 10 7 37 37 H 1.08998 * 109.47382 * 215.77845 * 11 10 7 38 38 H 1.09006 * 109.46879 * 335.77950 * 11 10 7 39 39 H 1.09006 * 109.46966 * 299.99489 * 14 12 10 40 40 H 1.08994 * 109.47288 * 59.99834 * 14 12 10 41 41 H 1.08993 * 109.47005 * 299.99520 * 15 14 12 42 42 H 1.09003 * 109.47305 * 59.99430 * 15 14 12 43 43 H 1.08993 * 109.47282 * 299.99856 * 16 15 14 44 44 H 1.09005 * 109.47121 * 60.00390 * 16 15 14 45 45 H 1.09006 * 109.46735 * 299.99980 * 17 16 15 46 46 H 1.08994 * 109.47381 * 60.00240 * 17 16 15 47 47 H 0.97000 * 119.99821 * 179.97438 * 21 20 18 48 48 H 1.08001 * 119.96901 * 179.97438 * 26 6 5 49 49 H 1.07998 * 120.02764 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0058 6 6 3.3019 3.6758 -0.0051 7 6 3.9860 5.0186 -0.0114 8 1 4.9562 4.9298 -0.5002 9 6 4.1822 5.4978 1.4283 10 7 3.1592 5.9845 -0.7391 11 6 2.0116 6.6110 -0.0784 12 6 3.4544 6.2968 -2.0167 13 8 4.4042 5.7777 -2.5638 14 6 2.6043 7.2908 -2.7650 15 6 3.1508 7.4633 -4.1837 16 6 2.2873 8.4720 -4.9437 17 6 2.8342 8.6450 -6.3621 18 6 1.9841 9.6391 -7.1105 19 1 1.1381 10.1009 -6.6235 20 6 2.2864 9.9589 -8.4172 21 7 3.3163 9.3960 -9.0106 22 14 1.2322 11.1905 -9.3452 23 1 1.7767 12.5576 -9.1458 24 1 1.2428 10.8597 -10.7928 25 1 -0.1612 11.1334 -8.8346 26 6 1.9211 3.6047 0.0002 27 6 1.2915 2.3752 0.0055 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 4.0209 0.3799 -0.0014 32 1 5.1345 2.5751 -0.0107 33 1 4.7973 4.7791 1.9698 34 1 4.6774 6.4687 1.4238 35 1 3.2120 5.5865 1.9171 36 1 2.3083 7.5795 0.3240 37 1 1.2070 6.7487 -0.8008 38 1 1.6656 5.9709 0.7332 39 1 1.5777 6.9274 -2.8133 40 1 2.6262 8.2499 -2.2477 41 1 4.1773 7.8265 -4.1359 42 1 3.1285 6.5040 -4.7008 43 1 1.2609 8.1085 -4.9915 44 1 2.3093 9.4315 -4.4268 45 1 3.8606 9.0088 -6.3139 46 1 2.8126 7.6858 -6.8794 47 1 3.5287 9.6208 -9.9300 48 1 1.3342 4.5114 0.0011 49 1 0.2130 2.3202 0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588274569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:27 Heat of formation + Delta-G solvation = -84.261402 kcal Electronic energy + Delta-G solvation = -26258.760585 eV Core-core repulsion = 22570.875538 eV Total energy + Delta-G solvation = -3687.885047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56449 -40.73745 -38.86431 -36.90943 -36.53241 -34.65558 -33.21978 -32.08717 -31.23548 -29.91705 -28.08560 -28.02108 -27.46621 -24.75805 -23.86210 -23.41125 -21.98574 -21.52237 -20.00920 -19.12056 -18.43795 -18.04408 -17.45717 -17.25654 -16.79969 -16.65554 -16.50395 -16.09234 -15.84232 -15.20617 -14.78778 -14.70643 -14.57389 -14.48285 -14.23139 -13.81713 -13.63668 -13.52214 -13.50941 -13.41102 -13.19561 -12.97465 -12.81895 -12.75825 -12.64499 -12.32823 -12.15656 -12.13516 -11.98479 -11.81912 -11.70047 -11.37441 -11.33194 -11.12982 -10.69331 -10.54858 -9.99528 -9.69259 -9.08576 -8.18282 -6.30621 0.35115 0.38534 1.40472 1.43037 1.54036 1.65365 2.00765 2.36280 2.42253 2.75366 3.14334 3.63765 3.75715 3.81448 3.93164 4.04196 4.12606 4.16962 4.25618 4.26535 4.31569 4.37206 4.42616 4.53409 4.57839 4.65137 4.66885 4.71089 4.74843 4.81011 4.82198 4.87413 4.95527 4.98523 5.06452 5.19035 5.21432 5.29313 5.33460 5.36958 5.37463 5.47905 5.57127 5.73038 5.77799 5.78231 5.88259 6.25420 6.38351 6.42224 6.87950 7.21394 7.38999 8.94066 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002187 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.005397 B =12798.467149 C =13594.102963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.080 4.080 6 C -0.139 4.139 7 C 0.179 3.821 8 H 0.076 0.924 9 C -0.145 4.145 10 N -0.608 5.608 11 C 0.058 3.942 12 C 0.509 3.491 13 O -0.588 6.588 14 C -0.125 4.125 15 C -0.095 4.095 16 C -0.094 4.094 17 C 0.018 3.982 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.258 1.258 26 C -0.082 4.082 27 C -0.210 4.210 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.062 0.938 45 H -0.016 1.016 46 H -0.017 1.017 47 H 0.263 0.737 48 H 0.148 0.852 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 -13.846 29.144 33.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.183 4.183 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.076 3.924 8 H 0.094 0.906 9 C -0.203 4.203 10 N -0.340 5.340 11 C -0.083 4.083 12 C 0.299 3.701 13 O -0.468 6.468 14 C -0.164 4.164 15 C -0.134 4.134 16 C -0.131 4.131 17 C -0.019 4.019 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.182 1.182 26 C -0.100 4.100 27 C -0.228 4.228 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.002 0.998 46 H 0.001 0.999 47 H 0.071 0.929 48 H 0.166 0.834 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.786 -14.308 28.734 32.809 hybrid contribution -0.038 0.321 -1.152 1.197 sum -6.824 -13.986 27.582 31.669 Atomic orbital electron populations 1.23326 0.76508 1.05526 1.02194 1.86040 1.23442 1.26977 1.88737 1.19277 0.92701 0.84818 0.96803 1.20589 0.91896 0.98948 1.06845 1.20978 1.00560 0.90986 0.97344 1.20240 0.94553 0.95100 1.04100 1.19833 0.93541 0.84792 0.94253 0.90579 1.22058 1.03648 1.02033 0.92531 1.48020 1.31054 1.43088 1.11857 1.22294 0.87533 0.99142 0.99329 1.21252 0.84682 0.82306 0.81865 1.90679 1.32048 1.55555 1.68532 1.21694 1.00267 0.99568 0.94885 1.21246 0.98871 0.98672 0.94585 1.21434 0.98545 0.98112 0.95036 1.19063 0.94912 0.94724 0.93212 1.21749 1.13448 1.24687 0.97925 0.91460 1.26119 0.96716 0.98680 0.99029 1.70140 1.29533 1.45032 1.13226 0.85369 0.79304 0.78653 0.77234 1.19661 1.21008 1.18222 1.21273 0.93938 0.98149 0.96605 1.21485 1.01083 0.91915 1.08319 0.91322 0.92240 0.86415 0.84610 0.84488 0.90379 0.91552 0.90264 0.90415 0.89441 0.88550 0.86553 0.86306 0.93985 0.94294 0.92069 0.91908 0.99785 0.99886 0.92874 0.83441 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.44 10.50 -92.40 -0.97 -7.41 16 3 C 0.11 2.22 6.69 22.51 0.15 2.37 16 4 C -0.16 -3.38 9.99 22.36 0.22 -3.16 16 5 C -0.08 -1.63 9.69 22.25 0.22 -1.41 16 6 C -0.14 -2.75 5.01 -19.85 -0.10 -2.85 16 7 C 0.18 3.48 2.78 44.25 0.12 3.60 16 8 H 0.08 1.92 7.08 -2.39 -0.02 1.90 16 9 C -0.15 -1.79 8.81 71.98 0.63 -1.16 16 10 N -0.61 -11.92 2.46 -826.81 -2.04 -13.95 16 11 C 0.06 0.59 7.73 127.77 0.99 1.58 16 12 C 0.51 14.47 7.67 87.66 0.67 15.15 16 13 O -0.59 -22.95 15.42 -3.03 -0.05 -23.00 16 14 C -0.12 -3.18 4.33 29.85 0.13 -3.05 16 15 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 16 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 17 C 0.02 1.00 4.97 29.85 0.15 1.15 16 18 C -0.54 -31.54 9.11 25.60 0.23 -31.30 16 19 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 20 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 21 N -0.94 -59.70 13.29 21.45 0.28 -59.41 16 22 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 26 C -0.08 -1.43 9.00 22.25 0.20 -1.23 16 27 C -0.21 -3.63 9.04 22.37 0.20 -3.43 16 28 H 0.07 0.52 7.65 -2.39 -0.02 0.50 16 29 H 0.06 0.58 7.67 -2.39 -0.02 0.56 16 30 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.71 6.71 -2.39 -0.02 0.70 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.72 6.68 -2.39 -0.02 0.70 16 38 H 0.10 0.62 5.09 -2.38 -0.01 0.61 16 39 H 0.12 2.36 7.41 -2.38 -0.02 2.34 16 40 H 0.12 2.38 8.11 -2.39 -0.02 2.36 16 41 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 42 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.39 8.14 -2.38 -0.02 2.38 16 45 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 46 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 47 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 48 H 0.15 1.90 4.59 -2.91 -0.01 1.89 16 49 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 Total: -1.00 -80.88 393.06 5.87 -75.01 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.92 Total: 11.34 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 5.69 Total: -29.61 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.75 Total: -73.37 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.02 Total: -30.41 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -80.88 5.87 -75.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588274569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.250 kcal (2) G-P(sol) polarization free energy of solvation -80.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds