Wall clock time and date at job start Tue Mar 31 2020 12:36:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09008 * 109.47017 * 2 1
4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3
5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1
6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2
7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4
8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5
9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6
10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6
11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7
12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3
13 13 C 1.46493 * 119.99980 * 60.00154 * 12 2 1
14 14 C 1.34774 * 120.00122 * 239.99850 * 12 2 1
15 15 O 1.21287 * 119.99955 * 0.02562 * 14 12 2
16 16 C 1.50699 * 120.00123 * 179.97438 * 14 12 2
17 17 C 1.52996 * 109.47267 * 180.02562 * 16 14 12
18 18 C 1.53000 * 109.47233 * 180.02562 * 17 16 14
19 19 C 1.53004 * 109.47303 * 180.02562 * 18 17 16
20 20 C 1.50699 * 109.47336 * 179.97438 * 19 18 17
21 21 H 1.08001 * 119.99681 * 359.97438 * 20 19 18
22 22 C 1.37870 * 120.00156 * 179.97438 * 20 19 18
23 23 N 1.31516 * 120.00148 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00261 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.46937 * 0.02562 * 24 22 20
26 26 H 1.48506 * 109.47287 * 119.99961 * 24 22 20
27 27 H 1.48499 * 109.47516 * 240.00294 * 24 22 20
28 28 H 1.08999 * 109.47011 * 59.99784 * 1 2 3
29 29 H 1.08995 * 109.47027 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47059 * 300.00131 * 1 2 3
31 31 H 1.08996 * 109.47463 * 54.99825 * 4 2 1
32 32 H 1.09005 * 109.46959 * 294.99973 * 4 2 1
33 33 H 1.08002 * 119.97497 * 359.97438 * 6 5 4
34 34 H 1.08000 * 120.02723 * 180.30253 * 7 6 5
35 35 H 0.96701 * 114.00536 * 89.99217 * 9 8 7
36 36 H 1.08007 * 120.02953 * 179.97438 * 10 8 7
37 37 H 1.08007 * 119.97030 * 180.02562 * 11 10 8
38 38 H 1.09000 * 109.47404 * 89.99922 * 13 12 2
39 39 H 1.08996 * 109.47230 * 210.00234 * 13 12 2
40 40 H 1.09008 * 109.47226 * 330.00019 * 13 12 2
41 41 H 1.08998 * 109.47352 * 300.00012 * 16 14 12
42 42 H 1.08998 * 109.46918 * 60.00379 * 16 14 12
43 43 H 1.08995 * 109.47376 * 300.00292 * 17 16 14
44 44 H 1.09006 * 109.47448 * 60.00051 * 17 16 14
45 45 H 1.09003 * 109.46723 * 299.99691 * 18 17 16
46 46 H 1.08998 * 109.47124 * 60.00192 * 18 17 16
47 47 H 1.08998 * 109.46655 * 299.99895 * 19 18 17
48 48 H 1.09000 * 109.47280 * 59.99432 * 19 18 17
49 49 H 0.96995 * 120.00255 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5419 -0.6149 -1.3127
6 6 4.3282 -1.5824 -0.7148
7 6 5.7052 -1.4905 -0.7769
8 6 6.2990 -0.4232 -1.4348
9 8 7.6534 -0.3308 -1.4978
10 6 5.5079 0.5491 -2.0293
11 6 4.1314 0.4526 -1.9644
12 7 2.0183 -0.6906 1.1962
13 6 1.6645 -2.0931 1.4281
14 6 2.7932 -0.0356 2.0833
15 8 3.0859 1.1257 1.8916
16 6 3.2950 -0.7458 3.3141
17 6 4.1446 0.2160 4.1472
18 6 4.6547 -0.5053 5.3964
19 6 5.5038 0.4567 6.2298
20 6 6.0056 -0.2535 7.4606
21 1 5.7447 -1.2874 7.6315
22 6 6.7978 0.4167 8.3684
23 7 7.1152 1.6760 8.1605
24 14 7.4193 -0.4634 9.8943
25 1 6.9245 -1.8635 9.8942
26 1 8.9044 -0.4637 9.8953
27 1 6.9237 0.2372 11.1062
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.6054 -0.2617 -2.1369
32 1 1.7517 -1.7715 -1.2056
33 1 3.8654 -2.4130 -0.2025
34 1 6.3189 -2.2490 -0.3139
35 1 8.0420 -0.7663 -2.2687
36 1 5.9678 1.3812 -2.5417
37 1 3.5150 1.2091 -2.4274
38 1 2.4158 -2.7376 0.9717
39 1 1.6238 -2.2851 2.5002
40 1 0.6904 -2.3002 0.9847
41 1 2.4471 -1.0879 3.9074
42 1 3.9004 -1.6024 3.0178
43 1 4.9926 0.5585 3.5542
44 1 3.5389 1.0724 4.4435
45 1 3.8068 -0.8480 5.9895
46 1 5.2605 -1.3614 5.0997
47 1 6.3515 0.7999 5.6368
48 1 4.8976 1.3127 6.5264
49 1 7.6723 2.1476 8.7993
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000588644360.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:53
Heat of formation + Delta-G solvation = -80.746291 kcal
Electronic energy + Delta-G solvation = -26919.948945 eV
Core-core repulsion = 23232.216325 eV
Total energy + Delta-G solvation = -3687.732621 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-40.42474 -39.56478 -37.45366 -36.16926 -34.82443 -33.14804 -32.37970 -31.14657
-30.52089 -29.40684 -27.09563 -26.30426 -25.61943 -22.99969 -22.89236 -21.87674
-20.74909 -19.93975 -18.92388 -18.57825 -17.10592 -16.39889 -16.11245 -16.02810
-15.88794 -15.56851 -15.39707 -14.60130 -14.40632 -14.15692 -13.77204 -13.72404
-13.51636 -13.05788 -12.95296 -12.86059 -12.58397 -12.45664 -12.41439 -12.16229
-12.04502 -11.78099 -11.57355 -11.50489 -11.24300 -11.10400 -10.95512 -10.58364
-10.47163 -10.44254 -10.34351 -9.64575 -9.55612 -9.16118 -9.12914 -8.92015
-8.84686 -8.50005 -8.26602 -5.91050 -3.93448 1.07044 1.21579 2.80735
2.93649 3.35848 3.42777 3.45350 3.46827 4.04845 4.40901 4.52277
4.60024 4.62592 4.82720 4.85726 4.87166 4.98623 5.06243 5.10966
5.15906 5.24087 5.35894 5.38358 5.40046 5.44044 5.47507 5.49135
5.54152 5.69538 5.81944 5.85111 5.89143 5.96012 6.14065 6.20658
6.29269 6.35415 6.39516 6.51416 6.62522 6.66995 6.90757 7.08430
7.25282 7.37973 7.51047 7.79247 7.95742 8.10922 8.32925 8.52592
9.14547 9.69978 11.20357
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012540 B = 0.002864 C = 0.002499
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.388263 B = 9773.171132 C =11203.260935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.138 3.862
3 H 0.102 0.898
4 C -0.088 4.088
5 C -0.086 4.086
6 C -0.096 4.096
7 C -0.142 4.142
8 C 0.101 3.899
9 O -0.497 6.497
10 C -0.142 4.142
11 C -0.098 4.098
12 N -0.616 5.616
13 C 0.074 3.926
14 C 0.516 3.484
15 O -0.532 6.532
16 C -0.136 4.136
17 C -0.103 4.103
18 C -0.109 4.109
19 C 0.019 3.981
20 C -0.518 4.518
21 H 0.054 0.946
22 C 0.054 3.946
23 N -0.895 5.895
24 Si 0.890 3.110
25 H -0.273 1.273
26 H -0.284 1.284
27 H -0.285 1.285
28 H 0.067 0.933
29 H 0.059 0.941
30 H 0.061 0.939
31 H 0.082 0.918
32 H 0.075 0.925
33 H 0.123 0.877
34 H 0.127 0.873
35 H 0.387 0.613
36 H 0.126 0.874
37 H 0.124 0.876
38 H 0.053 0.947
39 H 0.076 0.924
40 H 0.071 0.929
41 H 0.088 0.912
42 H 0.088 0.912
43 H 0.062 0.938
44 H 0.062 0.938
45 H 0.046 0.954
46 H 0.046 0.954
47 H 0.016 0.984
48 H 0.015 0.985
49 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.584 -9.342 -25.939 30.306
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.035 3.965
3 H 0.120 0.880
4 C -0.126 4.126
5 C -0.086 4.086
6 C -0.114 4.114
7 C -0.160 4.160
8 C 0.057 3.943
9 O -0.307 6.307
10 C -0.161 4.161
11 C -0.116 4.116
12 N -0.351 5.351
13 C -0.069 4.069
14 C 0.305 3.695
15 O -0.407 6.407
16 C -0.176 4.176
17 C -0.141 4.141
18 C -0.147 4.147
19 C -0.018 4.018
20 C -0.557 4.557
21 H 0.073 0.927
22 C -0.146 4.146
23 N -0.535 5.535
24 Si 0.719 3.281
25 H -0.198 1.198
26 H -0.211 1.211
27 H -0.211 1.211
28 H 0.085 0.915
29 H 0.078 0.922
30 H 0.080 0.920
31 H 0.101 0.899
32 H 0.093 0.907
33 H 0.140 0.860
34 H 0.145 0.855
35 H 0.242 0.758
36 H 0.144 0.856
37 H 0.142 0.858
38 H 0.072 0.928
39 H 0.094 0.906
40 H 0.089 0.911
41 H 0.107 0.893
42 H 0.106 0.894
43 H 0.081 0.919
44 H 0.081 0.919
45 H 0.064 0.936
46 H 0.064 0.936
47 H 0.034 0.966
48 H 0.034 0.966
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -12.390 -8.252 -25.431 29.467
hybrid contribution 0.539 -0.775 0.489 1.064
sum -11.851 -9.027 -24.941 29.052
Atomic orbital electron populations
1.22141 0.94816 1.02250 1.02677 1.21028 0.93557 0.98325 0.83613
0.87973 1.20990 0.91534 1.01827 0.98294 1.19752 0.95430 0.95177
0.98252 1.20899 0.92855 0.98971 0.98633 1.21432 0.95316 0.98306
1.00983 1.18488 0.82884 0.94495 0.98410 1.84891 1.16730 1.79297
1.49792 1.21392 0.93983 0.99647 1.01045 1.20874 0.94148 0.97398
0.99190 1.47915 1.51963 1.12345 1.22900 1.21812 1.00647 0.81822
1.02610 1.21048 0.77069 0.87047 0.84330 1.90690 1.56692 1.17097
1.76232 1.21803 1.01250 1.00453 0.94093 1.21448 0.98790 0.97425
0.96436 1.21638 0.99258 0.99192 0.94577 1.19100 0.94493 0.94265
0.93907 1.21321 1.30541 0.97754 1.06071 0.92729 1.25045 0.96435
0.94892 0.98250 1.69988 1.37605 1.09520 1.36337 0.86564 0.78559
0.79803 0.83219 1.19786 1.21066 1.21071 0.91453 0.92244 0.91957
0.89942 0.90654 0.85960 0.85468 0.75809 0.85566 0.85835 0.92842
0.90570 0.91081 0.89340 0.89410 0.91891 0.91916 0.93570 0.93561
0.96589 0.96617 0.93128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.12 9.17 37.16 0.34 -0.78 16
2 C 0.14 1.29 2.63 -67.93 -0.18 1.11 16
3 H 0.10 1.25 6.90 -51.92 -0.36 0.89 16
4 C -0.09 -0.66 4.78 -27.89 -0.13 -0.79 16
5 C -0.09 -0.86 4.95 -104.60 -0.52 -1.38 16
6 C -0.10 -1.00 9.30 -39.60 -0.37 -1.36 16
7 C -0.14 -1.63 9.99 -39.43 -0.39 -2.02 16
8 C 0.10 1.22 6.70 -39.22 -0.26 0.95 16
9 O -0.50 -5.60 13.50 -19.42 -0.26 -5.86 16
10 C -0.14 -1.60 9.99 -39.43 -0.39 -1.99 16
11 C -0.10 -1.02 9.69 -39.61 -0.38 -1.40 16
12 N -0.62 -6.45 2.14 -173.93 -0.37 -6.82 16
13 C 0.07 0.52 9.20 59.84 0.55 1.07 16
14 C 0.52 7.61 7.67 -10.99 -0.08 7.52 16
15 O -0.53 -10.15 15.31 5.55 0.08 -10.07 16
16 C -0.14 -1.95 4.25 -27.89 -0.12 -2.07 16
17 C -0.10 -1.96 4.50 -26.73 -0.12 -2.08 16
18 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16
19 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16
20 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16
21 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
22 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16
23 N -0.89 -28.08 13.29 55.43 0.74 -27.34 16
24 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16
25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
26 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16
27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16
28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
29 H 0.06 0.33 6.66 -51.93 -0.35 -0.02 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16
32 H 0.07 0.46 7.45 -51.93 -0.39 0.07 16
33 H 0.12 1.06 6.15 -52.49 -0.32 0.74 16
34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16
35 H 0.39 2.19 9.06 45.56 0.41 2.60 16
36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16
37 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16
38 H 0.05 0.32 6.23 -51.93 -0.32 0.00 16
39 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16
40 H 0.07 0.36 6.43 -51.92 -0.33 0.03 16
41 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16
42 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16
43 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16
44 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16
45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
46 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16
47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
LS Contribution 396.83 15.07 5.98 5.98
Total: -1.00 -37.09 396.83 -9.01 -46.10
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: -7.41 Total: 0.13 kcal
Atomic # 6 Polarization: -16.63 SS G_CDS: -2.75 Total: -19.38 kcal
Atomic # 7 Polarization: -34.52 SS G_CDS: 0.36 Total: -34.16 kcal
Atomic # 8 Polarization: -15.75 SS G_CDS: -0.18 Total: -15.93 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -37.09 -9.01 -46.10 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588644360.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.642 kcal
(2) G-P(sol) polarization free energy of solvation -37.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds