Wall clock time and date at job start Tue Mar 31 2020 12:36:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09008 * 109.47017 * 2 1
4 4 C 1.52997 * 109.47238 * 240.00157 * 2 1 3
5 5 C 1.50696 * 109.47496 * 175.00184 * 4 2 1
6 6 C 1.38266 * 119.94508 * 89.99136 * 5 4 2
7 7 C 1.38149 * 120.05411 * 179.70262 * 6 5 4
8 8 C 1.38726 * 119.94477 * 0.28574 * 7 6 5
9 9 O 1.35900 * 120.05752 * 180.02562 * 8 7 6
10 10 C 1.38729 * 119.89044 * 359.97438 * 8 7 6
11 11 C 1.38144 * 119.94142 * 0.02562 * 10 8 7
12 12 N 1.46502 * 109.47090 * 119.99818 * 2 1 3
13 13 C 1.46493 * 119.99980 * 60.00154 * 12 2 1
14 14 C 1.34774 * 120.00122 * 239.99850 * 12 2 1
15 15 O 1.21287 * 119.99955 * 0.02562 * 14 12 2
16 16 C 1.50699 * 120.00123 * 179.97438 * 14 12 2
17 17 C 1.52996 * 109.47267 * 180.02562 * 16 14 12
18 18 C 1.53000 * 109.47233 * 180.02562 * 17 16 14
19 19 C 1.53004 * 109.47303 * 180.02562 * 18 17 16
20 20 C 1.50699 * 109.47336 * 179.97438 * 19 18 17
21 21 H 1.08001 * 119.99681 * 359.97438 * 20 19 18
22 22 C 1.37870 * 120.00156 * 179.97438 * 20 19 18
23 23 N 1.31516 * 120.00148 * 0.02562 * 22 20 19
24 24 Si 1.86797 * 120.00261 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.46937 * 0.02562 * 24 22 20
26 26 H 1.48506 * 109.47287 * 119.99961 * 24 22 20
27 27 H 1.48499 * 109.47516 * 240.00294 * 24 22 20
28 28 H 1.08999 * 109.47011 * 59.99784 * 1 2 3
29 29 H 1.08995 * 109.47027 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47059 * 300.00131 * 1 2 3
31 31 H 1.08996 * 109.47463 * 54.99825 * 4 2 1
32 32 H 1.09005 * 109.46959 * 294.99973 * 4 2 1
33 33 H 1.08002 * 119.97497 * 359.97438 * 6 5 4
34 34 H 1.08000 * 120.02723 * 180.30253 * 7 6 5
35 35 H 0.96701 * 114.00536 * 89.99217 * 9 8 7
36 36 H 1.08007 * 120.02953 * 179.97438 * 10 8 7
37 37 H 1.08007 * 119.97030 * 180.02562 * 11 10 8
38 38 H 1.09000 * 109.47404 * 89.99922 * 13 12 2
39 39 H 1.08996 * 109.47230 * 210.00234 * 13 12 2
40 40 H 1.09008 * 109.47226 * 330.00019 * 13 12 2
41 41 H 1.08998 * 109.47352 * 300.00012 * 16 14 12
42 42 H 1.08998 * 109.46918 * 60.00379 * 16 14 12
43 43 H 1.08995 * 109.47376 * 300.00292 * 17 16 14
44 44 H 1.09006 * 109.47448 * 60.00051 * 17 16 14
45 45 H 1.09003 * 109.46723 * 299.99691 * 18 17 16
46 46 H 1.08998 * 109.47124 * 60.00192 * 18 17 16
47 47 H 1.08998 * 109.46655 * 299.99895 * 19 18 17
48 48 H 1.09000 * 109.47280 * 59.99432 * 19 18 17
49 49 H 0.96995 * 120.00255 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5419 -0.6149 -1.3127
6 6 4.3282 -1.5824 -0.7148
7 6 5.7052 -1.4905 -0.7769
8 6 6.2990 -0.4232 -1.4348
9 8 7.6534 -0.3308 -1.4978
10 6 5.5079 0.5491 -2.0293
11 6 4.1314 0.4526 -1.9644
12 7 2.0183 -0.6906 1.1962
13 6 1.6645 -2.0931 1.4281
14 6 2.7932 -0.0356 2.0833
15 8 3.0859 1.1257 1.8916
16 6 3.2950 -0.7458 3.3141
17 6 4.1446 0.2160 4.1472
18 6 4.6547 -0.5053 5.3964
19 6 5.5038 0.4567 6.2298
20 6 6.0056 -0.2535 7.4606
21 1 5.7447 -1.2874 7.6315
22 6 6.7978 0.4167 8.3684
23 7 7.1152 1.6760 8.1605
24 14 7.4193 -0.4634 9.8943
25 1 6.9245 -1.8635 9.8942
26 1 8.9044 -0.4637 9.8953
27 1 6.9237 0.2372 11.1062
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 1.6054 -0.2617 -2.1369
32 1 1.7517 -1.7715 -1.2056
33 1 3.8654 -2.4130 -0.2025
34 1 6.3189 -2.2490 -0.3139
35 1 8.0420 -0.7663 -2.2687
36 1 5.9678 1.3812 -2.5417
37 1 3.5150 1.2091 -2.4274
38 1 2.4158 -2.7376 0.9717
39 1 1.6238 -2.2851 2.5002
40 1 0.6904 -2.3002 0.9847
41 1 2.4471 -1.0879 3.9074
42 1 3.9004 -1.6024 3.0178
43 1 4.9926 0.5585 3.5542
44 1 3.5389 1.0724 4.4435
45 1 3.8068 -0.8480 5.9895
46 1 5.2605 -1.3614 5.0997
47 1 6.3515 0.7999 5.6368
48 1 4.8976 1.3127 6.5264
49 1 7.6723 2.1476 8.7993
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588644360.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:53
Heat of formation + Delta-G solvation = -104.281285 kcal
Electronic energy + Delta-G solvation = -26920.969499 eV
Core-core repulsion = 23232.216325 eV
Total energy + Delta-G solvation = -3688.753174 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.32075 -40.47342 -38.34138 -37.09643 -36.56358 -34.70013 -33.73217 -31.94258
-31.56762 -30.85277 -27.80466 -27.46296 -26.92702 -24.53083 -23.77431 -22.87741
-21.97412 -21.47895 -19.82819 -19.40450 -18.45791 -18.05824 -17.21598 -17.08402
-16.75440 -16.56529 -16.40399 -16.19314 -15.85784 -14.96509 -14.75634 -14.63733
-14.52539 -14.45235 -14.02393 -13.65580 -13.59941 -13.55249 -13.47988 -13.27772
-13.10914 -12.95844 -12.84356 -12.81861 -12.42883 -12.29647 -12.16605 -12.14923
-11.94086 -11.76125 -11.41078 -11.38115 -11.34956 -11.12035 -10.64127 -10.57019
-9.94700 -9.68840 -9.30145 -8.19390 -6.32085 0.27039 0.39948 1.39551
1.41111 1.54588 1.71496 2.08919 2.41423 2.67165 3.13169 3.29402
3.64153 3.81939 3.88405 4.01773 4.04322 4.08656 4.10991 4.28515
4.37517 4.38408 4.41223 4.52349 4.60604 4.64481 4.74712 4.78359
4.79028 4.83430 4.84107 4.93371 4.99030 5.01156 5.13175 5.16345
5.19170 5.30629 5.32089 5.35036 5.39209 5.47096 5.54810 5.61244
5.75532 5.76964 5.86263 5.94359 6.23818 6.44994 6.83974 6.86396
7.28766 7.37689 8.93301
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012540 B = 0.002864 C = 0.002499
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2232.388263 B = 9773.171132 C =11203.260935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.135 3.865
3 H 0.065 0.935
4 C -0.080 4.080
5 C -0.093 4.093
6 C -0.100 4.100
7 C -0.161 4.161
8 C 0.082 3.918
9 O -0.516 6.516
10 C -0.161 4.161
11 C -0.109 4.109
12 N -0.604 5.604
13 C 0.062 3.938
14 C 0.510 3.490
15 O -0.590 6.590
16 C -0.127 4.127
17 C -0.094 4.094
18 C -0.093 4.093
19 C 0.019 3.981
20 C -0.540 4.540
21 H 0.067 0.933
22 C -0.009 4.009
23 N -0.939 5.939
24 Si 0.972 3.028
25 H -0.256 1.256
26 H -0.279 1.279
27 H -0.278 1.278
28 H 0.083 0.917
29 H 0.083 0.917
30 H 0.044 0.956
31 H 0.103 0.897
32 H 0.100 0.900
33 H 0.144 0.856
34 H 0.132 0.868
35 H 0.407 0.593
36 H 0.132 0.868
37 H 0.139 0.861
38 H 0.070 0.930
39 H 0.083 0.917
40 H 0.099 0.901
41 H 0.118 0.882
42 H 0.111 0.889
43 H 0.033 0.967
44 H 0.041 0.959
45 H 0.063 0.937
46 H 0.059 0.941
47 H -0.020 1.020
48 H -0.016 1.016
49 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.622 -12.735 -26.190 32.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.032 3.968
3 H 0.083 0.917
4 C -0.117 4.117
5 C -0.093 4.093
6 C -0.118 4.118
7 C -0.179 4.179
8 C 0.038 3.962
9 O -0.329 6.329
10 C -0.179 4.179
11 C -0.127 4.127
12 N -0.337 5.337
13 C -0.080 4.080
14 C 0.299 3.701
15 O -0.471 6.471
16 C -0.166 4.166
17 C -0.132 4.132
18 C -0.131 4.131
19 C -0.018 4.018
20 C -0.578 4.578
21 H 0.086 0.914
22 C -0.205 4.205
23 N -0.579 5.579
24 Si 0.796 3.204
25 H -0.179 1.179
26 H -0.205 1.205
27 H -0.204 1.204
28 H 0.102 0.898
29 H 0.102 0.898
30 H 0.063 0.937
31 H 0.121 0.879
32 H 0.119 0.881
33 H 0.161 0.839
34 H 0.150 0.850
35 H 0.266 0.734
36 H 0.150 0.850
37 H 0.157 0.843
38 H 0.088 0.912
39 H 0.101 0.899
40 H 0.117 0.883
41 H 0.136 0.864
42 H 0.129 0.871
43 H 0.052 0.948
44 H 0.059 0.941
45 H 0.082 0.918
46 H 0.078 0.922
47 H -0.001 1.001
48 H 0.002 0.998
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -14.462 -11.708 -25.726 31.750
hybrid contribution 1.176 0.321 0.504 1.319
sum -13.286 -11.387 -25.223 30.698
Atomic orbital electron populations
1.22086 0.92528 1.03787 1.02664 1.21118 0.95183 0.96666 0.83868
0.91693 1.21009 0.89520 1.03276 0.97935 1.20110 0.97064 0.94647
0.97496 1.21190 0.92480 0.99653 0.98445 1.21646 0.96260 0.98558
1.01459 1.18734 0.83178 0.95166 0.99143 1.84822 1.16785 1.79910
1.51369 1.21604 0.94706 0.99943 1.01677 1.21197 0.94072 0.98091
0.99305 1.47941 1.50007 1.13654 1.22061 1.22176 1.02666 0.79406
1.03740 1.21092 0.77492 0.86425 0.85058 1.90676 1.59258 1.19569
1.77583 1.21680 1.01700 0.99434 0.93785 1.21221 0.98283 0.97826
0.95872 1.21433 0.98922 0.98014 0.94718 1.19055 0.93782 0.94660
0.94332 1.21770 1.30834 0.98463 1.06748 0.91437 1.26131 0.96528
0.95665 1.02224 1.70150 1.38370 1.11517 1.37911 0.85302 0.77875
0.79106 0.78159 1.17916 1.20506 1.20367 0.89841 0.89807 0.93721
0.87869 0.88125 0.83880 0.84996 0.73441 0.85028 0.84290 0.91205
0.89868 0.88278 0.86423 0.87075 0.94773 0.94056 0.91820 0.92230
1.00114 0.99765 0.92853
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.67 9.17 71.98 0.66 -1.01 16
2 C 0.13 2.25 2.63 44.99 0.12 2.37 16
3 H 0.06 1.61 6.90 -2.38 -0.02 1.60 16
4 C -0.08 -0.94 4.78 29.85 0.14 -0.80 16
5 C -0.09 -1.73 4.95 -19.85 -0.10 -1.83 16
6 C -0.10 -1.93 9.30 22.26 0.21 -1.73 16
7 C -0.16 -3.67 9.99 22.37 0.22 -3.45 16
8 C 0.08 2.03 6.70 22.50 0.15 2.18 16
9 O -0.52 -12.11 13.50 -92.42 -1.25 -13.36 16
10 C -0.16 -3.74 9.99 22.36 0.22 -3.52 16
11 C -0.11 -2.24 9.69 22.25 0.22 -2.03 16
12 N -0.60 -11.28 2.14 -822.59 -1.76 -13.04 16
13 C 0.06 0.59 9.20 127.77 1.18 1.76 16
14 C 0.51 14.79 7.67 87.66 0.67 15.46 16
15 O -0.59 -23.59 15.31 -3.05 -0.05 -23.64 16
16 C -0.13 -3.43 4.25 29.85 0.13 -3.30 16
17 C -0.09 -3.68 4.50 30.59 0.14 -3.54 16
18 C -0.09 -4.01 5.15 30.60 0.16 -3.85 16
19 C 0.02 1.08 4.97 29.85 0.15 1.23 16
20 C -0.54 -32.14 9.11 25.60 0.23 -31.91 16
21 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16
22 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16
23 N -0.94 -60.53 13.29 21.44 0.28 -60.25 16
24 Si 0.97 45.66 29.54 68.60 2.03 47.68 16
25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16
26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
29 H 0.08 0.52 6.66 -2.39 -0.02 0.51 16
30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16
32 H 0.10 0.73 7.45 -2.38 -0.02 0.71 16
33 H 0.14 2.03 6.15 -2.91 -0.02 2.01 16
34 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16
35 H 0.41 4.87 9.06 -74.06 -0.67 4.20 16
36 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16
37 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16
38 H 0.07 0.50 6.23 -2.39 -0.01 0.48 16
39 H 0.08 0.73 6.44 -2.39 -0.02 0.72 16
40 H 0.10 0.45 6.43 -2.38 -0.02 0.43 16
41 H 0.12 2.51 7.40 -2.39 -0.02 2.50 16
42 H 0.11 2.51 8.11 -2.39 -0.02 2.49 16
43 H 0.03 1.50 8.10 -2.39 -0.02 1.48 16
44 H 0.04 1.76 8.10 -2.38 -0.02 1.74 16
45 H 0.06 2.51 8.14 -2.39 -0.02 2.50 16
46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
47 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16
48 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
49 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16
Total: -1.00 -85.68 396.83 4.48 -81.21
By element:
Atomic # 1 Polarization: 15.15 SS G_CDS: 0.26 Total: 15.41 kcal
Atomic # 6 Polarization: -38.98 SS G_CDS: 4.96 Total: -34.02 kcal
Atomic # 7 Polarization: -71.81 SS G_CDS: -1.48 Total: -73.28 kcal
Atomic # 8 Polarization: -35.70 SS G_CDS: -1.29 Total: -37.00 kcal
Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal
Total: -85.68 4.48 -81.21 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588644360.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.075 kcal
(2) G-P(sol) polarization free energy of solvation -85.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.757 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.207 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.281 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds