Wall clock time and date at job start Tue Mar 31 2020 13:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99894 * 2 1 4 4 C 1.53003 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47037 * 174.99942 * 4 3 2 6 6 C 1.52994 * 109.47231 * 55.00052 * 4 3 2 7 7 O 1.42897 * 109.46880 * 294.99869 * 4 3 2 8 8 C 1.35905 * 116.99648 * 203.41307 * 7 4 3 9 9 C 1.38725 * 120.05749 * 357.97203 * 8 7 4 10 10 C 1.38144 * 119.94845 * 179.97438 * 9 8 7 11 11 C 1.38272 * 120.05321 * 359.97438 * 10 9 8 12 12 C 1.50689 * 119.94547 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.47195 * 94.97415 * 12 11 10 14 14 C 1.46903 * 111.00175 * 184.58408 * 13 12 11 15 15 C 1.53003 * 109.47200 * 185.45085 * 14 13 12 16 16 C 1.50702 * 115.54542 * 299.51534 * 15 14 13 17 17 H 1.08004 * 119.99616 * 274.97664 * 16 15 14 18 18 C 1.37874 * 120.00287 * 94.71225 * 16 15 14 19 19 N 1.31514 * 120.00086 * 179.64175 * 18 16 15 20 20 Si 1.86797 * 119.99987 * 359.64412 * 18 16 15 21 21 H 1.48503 * 109.47182 * 95.21767 * 20 18 16 22 22 H 1.48499 * 109.47234 * 215.22074 * 20 18 16 23 23 H 1.48503 * 109.46966 * 335.21675 * 20 18 16 24 24 C 1.52998 * 117.50177 * 85.18064 * 15 14 13 25 25 C 1.52999 * 117.50075 * 153.84237 * 15 14 13 26 26 C 1.38265 * 120.10766 * 0.27661 * 11 10 9 27 27 C 1.38144 * 120.05904 * 359.44901 * 26 11 10 28 28 H 1.08998 * 109.47388 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47099 * 300.00158 * 1 2 3 30 30 H 1.09004 * 109.47033 * 59.99821 * 1 2 3 31 31 H 1.08994 * 109.46910 * 59.99992 * 3 2 1 32 32 H 1.09001 * 109.46995 * 300.00064 * 3 2 1 33 33 H 1.08999 * 109.47333 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.47021 * 299.99900 * 6 4 3 35 35 H 1.09003 * 109.47370 * 59.99632 * 6 4 3 36 36 H 1.08003 * 120.02576 * 359.95644 * 9 8 7 37 37 H 1.07993 * 119.97607 * 180.02562 * 10 9 8 38 38 H 1.09003 * 109.47295 * 334.96984 * 12 11 10 39 39 H 1.09002 * 109.47157 * 214.97191 * 12 11 10 40 40 H 1.00900 * 111.00131 * 308.53684 * 13 12 11 41 41 H 1.09003 * 109.47046 * 65.44703 * 14 13 12 42 42 H 1.08999 * 109.47067 * 305.44607 * 14 13 12 43 43 H 0.96996 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.09001 * 117.49997 * 215.00601 * 24 15 14 45 45 H 1.09000 * 117.49690 * 0.02562 * 24 15 14 46 46 H 1.09002 * 117.49820 * 359.97438 * 25 15 14 47 47 H 1.09002 * 117.49797 * 144.97196 * 25 15 14 48 48 H 1.08003 * 119.97118 * 179.70165 * 26 11 10 49 49 H 1.08002 * 120.02885 * 180.27320 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1764 -0.0889 6 6 3.9790 0.3193 -1.1806 7 8 3.9648 0.5796 1.2220 8 6 5.2415 0.8264 1.6173 9 6 6.0771 1.5996 0.8246 10 6 7.3742 1.8495 1.2289 11 6 7.8397 1.3300 2.4228 12 6 9.2552 1.6036 2.8611 13 7 9.2732 2.7635 3.7623 14 6 10.6496 3.1275 4.1246 15 6 10.6235 4.2478 5.1663 16 6 9.9577 5.5269 4.7284 17 1 10.5201 6.2680 4.1798 18 6 8.6293 5.7487 5.0233 19 7 8.0502 6.8680 4.6473 20 14 7.6520 4.4593 5.9570 21 1 7.6570 4.7873 7.4054 22 1 6.2534 4.4412 5.4584 23 1 8.2688 3.1245 5.7496 24 6 10.4804 3.8439 6.6350 25 6 11.8218 4.3625 6.1107 26 6 7.0104 0.5548 3.2121 27 6 5.7107 0.3067 2.8150 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0656 0.2336 -1.1804 34 1 3.5359 -0.6725 -1.0910 35 1 3.6515 0.7808 -2.1122 36 1 5.7140 2.0056 -0.1080 37 1 8.0250 2.4517 0.6124 38 1 9.8722 1.8128 1.9872 39 1 9.6488 0.7316 3.3834 40 1 8.7879 3.5475 3.3525 41 1 11.1808 3.4694 3.2363 42 1 11.1582 2.2573 4.5397 43 1 7.1155 7.0238 4.8545 44 1 9.9047 4.5032 7.2846 45 1 10.4052 2.7798 6.8592 46 1 12.6285 3.6394 5.9902 47 1 12.1288 5.3631 6.4150 48 1 7.3777 0.1462 4.1419 49 1 5.0620 -0.2952 3.4341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594936429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:14 Heat of formation + Delta-G solvation = -24.456282 kcal Electronic energy + Delta-G solvation = -26782.305428 eV Core-core repulsion = 23097.013726 eV Total energy + Delta-G solvation = -3685.291703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33455 -38.54275 -37.61991 -37.04640 -34.37889 -32.65782 -31.97842 -30.77418 -30.08896 -27.71864 -26.40504 -25.96977 -25.11920 -23.40315 -23.04639 -21.62755 -21.37271 -20.47962 -18.80114 -18.38409 -16.67585 -16.59651 -16.28879 -15.94836 -15.41569 -15.24372 -15.07259 -14.76036 -14.37086 -14.32287 -14.01830 -13.73457 -13.58547 -13.20719 -12.92477 -12.76234 -12.50934 -12.40712 -12.32908 -12.16992 -11.91683 -11.64220 -11.55905 -11.28568 -10.97381 -10.96005 -10.79648 -10.59593 -10.45869 -10.20822 -10.02027 -9.84981 -9.35284 -8.92722 -8.82793 -8.52387 -8.41722 -7.95739 -7.35873 -6.00337 -4.07224 1.51420 1.56975 3.09366 3.40751 3.50367 3.63723 3.88766 3.93582 4.43343 4.65019 4.67156 4.79455 4.82784 4.91369 4.95765 5.02135 5.03563 5.05434 5.15092 5.24265 5.30375 5.33141 5.35755 5.38620 5.51007 5.57477 5.59884 5.76754 5.86181 5.89305 6.00467 6.00925 6.17211 6.20498 6.27717 6.41598 6.44178 6.48556 6.55167 6.59389 6.76915 6.83268 6.87083 6.92749 7.14188 7.21640 7.49483 7.82204 7.88913 8.17687 8.57449 8.99072 9.63489 11.09280 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.002901 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.625199 B = 9648.220722 C =10241.663381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.084 3.916 5 H 0.087 0.913 6 C -0.175 4.175 7 O -0.303 6.303 8 C 0.124 3.876 9 C -0.212 4.212 10 C -0.072 4.072 11 C -0.112 4.112 12 C 0.098 3.902 13 N -0.672 5.672 14 C 0.101 3.899 15 C 0.008 3.992 16 C -0.496 4.496 17 H 0.072 0.928 18 C 0.080 3.920 19 N -0.903 5.903 20 Si 0.861 3.139 21 H -0.298 1.298 22 H -0.305 1.305 23 H -0.196 1.196 24 C -0.191 4.191 25 C -0.187 4.187 26 C -0.058 4.058 27 C -0.155 4.155 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.030 0.970 39 H 0.072 0.928 40 H 0.354 0.646 41 H 0.024 0.976 42 H 0.047 0.953 43 H 0.262 0.738 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.130 0.870 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -14.773 -11.110 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.011 4.011 4 C 0.027 3.973 5 H 0.105 0.895 6 C -0.232 4.232 7 O -0.217 6.217 8 C 0.079 3.921 9 C -0.230 4.230 10 C -0.091 4.091 11 C -0.113 4.113 12 C -0.031 4.031 13 N -0.305 5.305 14 C -0.028 4.028 15 C 0.007 3.993 16 C -0.533 4.533 17 H 0.090 0.910 18 C -0.123 4.123 19 N -0.540 5.540 20 Si 0.689 3.311 21 H -0.226 1.226 22 H -0.233 1.233 23 H -0.117 1.117 24 C -0.228 4.228 25 C -0.225 4.225 26 C -0.076 4.076 27 C -0.173 4.173 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.175 0.825 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.278 -15.339 -10.481 21.231 hybrid contribution -0.579 0.534 -0.409 0.887 sum -10.856 -14.805 -10.890 21.346 Atomic orbital electron populations 1.22755 0.81077 1.02858 0.99950 1.87957 1.19510 1.27009 1.95379 1.22621 0.91519 0.85665 1.01287 1.22474 0.93217 0.97434 0.84135 0.89503 1.22259 1.02188 1.01863 0.96898 1.86182 1.26212 1.69538 1.39785 1.18985 0.83667 0.95454 0.94010 1.21161 0.95473 1.04617 1.01796 1.20877 0.94857 0.97483 0.95893 1.19811 0.96992 0.99550 0.94933 1.20846 0.91398 0.95974 0.94834 1.60793 1.16689 1.09009 1.43993 1.21504 0.88008 0.95941 0.97320 1.19369 0.97431 0.95353 0.87170 1.20263 0.95477 1.00356 1.37234 0.91037 1.25024 0.97400 0.95131 0.94712 1.69928 1.12338 1.24992 1.46701 0.87189 0.78380 0.87301 0.78273 1.22572 1.23279 1.11738 1.22832 1.00466 0.98969 1.00560 1.22899 0.90981 1.00727 1.07935 1.20854 0.92093 0.96190 0.98478 1.20398 0.96572 1.04689 0.95664 0.89555 0.93951 0.94166 0.92128 0.91319 0.91746 0.90563 0.91347 0.85656 0.85935 0.95226 0.90996 0.82531 0.95831 0.93433 0.92833 0.90077 0.90773 0.91275 0.89793 0.85254 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.00 9.79 -40.09 -0.39 -4.39 16 3 C 0.07 0.61 5.81 37.16 0.22 0.83 16 4 C 0.08 0.89 2.64 -26.73 -0.07 0.82 16 5 H 0.09 0.84 6.24 -51.93 -0.32 0.52 16 6 C -0.17 -1.63 8.98 37.15 0.33 -1.29 16 7 O -0.30 -4.21 9.77 -24.30 -0.24 -4.45 16 8 C 0.12 1.81 6.58 -39.22 -0.26 1.55 16 9 C -0.21 -2.92 8.22 -39.44 -0.32 -3.24 16 10 C -0.07 -1.06 9.67 -39.60 -0.38 -1.44 16 11 C -0.11 -1.75 5.35 -104.60 -0.56 -2.30 16 12 C 0.10 1.55 5.82 -4.98 -0.03 1.52 16 13 N -0.67 -13.15 3.85 -115.06 -0.44 -13.59 16 14 C 0.10 2.02 5.56 -3.82 -0.02 2.00 16 15 C 0.01 0.18 1.36 -155.66 -0.21 -0.03 16 16 C -0.50 -13.69 8.90 -34.44 -0.31 -14.00 16 17 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 18 C 0.08 2.29 5.18 -17.82 -0.09 2.19 16 19 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 20 Si 0.86 21.88 23.01 -169.99 -3.91 17.97 16 21 H -0.30 -7.76 7.09 56.52 0.40 -7.36 16 22 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 23 H -0.20 -4.61 4.89 56.52 0.28 -4.33 16 24 C -0.19 -4.16 7.07 -26.69 -0.19 -4.35 16 25 C -0.19 -3.86 9.95 -26.69 -0.27 -4.12 16 26 C -0.06 -0.87 9.71 -39.61 -0.38 -1.25 16 27 C -0.15 -2.28 9.99 -39.43 -0.39 -2.68 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 34 H 0.08 0.79 7.56 -51.93 -0.39 0.40 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.13 1.43 5.49 -52.48 -0.29 1.14 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.03 0.44 8.04 -51.93 -0.42 0.02 16 39 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 40 H 0.35 7.76 6.99 -39.29 -0.27 7.49 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.08 1.91 6.34 -51.93 -0.33 1.58 16 45 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 48 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 49 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 387.07 15.07 5.83 5.83 Total: -1.00 -32.05 387.07 -8.61 -40.67 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.41 Total: 9.29 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.83 Total: -24.48 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.33 Total: -40.44 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.63 Total: -8.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -3.91 Total: 17.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.05 -8.61 -40.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594936429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.212 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds