Wall clock time and date at job start Tue Mar 31 2020 12:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47483 * 2 1 4 4 C 1.53004 * 109.47214 * 119.99964 * 2 1 3 5 5 C 1.50701 * 109.47022 * 294.99729 * 4 2 1 6 6 H 1.07995 * 119.99911 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99822 * 180.02562 * 5 4 2 8 8 N 1.31509 * 119.99931 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99747 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47063 * 90.00064 * 9 7 5 11 11 H 1.48498 * 109.47108 * 209.99592 * 9 7 5 12 12 H 1.48499 * 109.47198 * 330.00006 * 9 7 5 13 13 C 1.53005 * 109.47265 * 239.99743 * 2 1 3 14 14 N 1.46506 * 109.46608 * 64.99810 * 13 2 1 15 15 C 1.39665 * 119.99507 * 180.02562 * 14 13 2 16 16 C 1.38973 * 120.05109 * 359.97438 * 15 14 13 17 17 C 1.38115 * 120.04078 * 180.02562 * 16 15 14 18 18 C 1.38223 * 120.12363 * 359.74065 * 17 16 15 19 19 C 1.38775 * 120.09092 * 0.51216 * 18 17 16 20 20 O 1.35896 * 120.01418 * 179.76748 * 19 18 17 21 21 C 1.42905 * 117.00039 * 359.72141 * 20 19 18 22 22 C 1.52999 * 109.46728 * 179.97438 * 21 20 19 23 23 H 1.09002 * 110.33858 * 307.24983 * 22 21 20 24 24 C 1.54482 * 110.37133 * 185.00197 * 22 21 20 25 25 C 1.54513 * 104.06625 * 217.19339 * 24 22 21 26 26 C 1.54481 * 104.05835 * 359.97438 * 25 24 22 27 27 O 1.44423 * 104.80623 * 23.98046 * 26 25 24 28 28 C 1.38608 * 119.96584 * 359.49180 * 19 18 17 29 29 H 1.08999 * 109.47492 * 59.99786 * 1 2 3 30 30 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47115 * 300.00436 * 1 2 3 32 32 H 1.09002 * 109.47135 * 54.99722 * 4 2 1 33 33 H 1.08996 * 109.46924 * 174.99669 * 4 2 1 34 34 H 0.97000 * 120.00081 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46935 * 305.00444 * 13 2 1 36 36 H 1.08997 * 109.47540 * 184.99779 * 13 2 1 37 37 H 0.96996 * 120.00315 * 0.02562 * 14 13 2 38 38 H 1.08006 * 119.97926 * 0.04310 * 16 15 14 39 39 H 1.07996 * 119.93751 * 180.02562 * 17 16 15 40 40 H 1.08003 * 119.95314 * 180.27801 * 18 17 16 41 41 H 1.09000 * 109.47187 * 300.00222 * 21 20 19 42 42 H 1.09001 * 109.46558 * 60.00270 * 21 20 19 43 43 H 1.09004 * 110.50798 * 335.83627 * 24 22 21 44 44 H 1.08998 * 110.51324 * 98.40916 * 24 22 21 45 45 H 1.08992 * 110.51112 * 118.63994 * 25 24 22 46 46 H 1.08995 * 110.50952 * 241.21560 * 25 24 22 47 47 H 1.09001 * 110.37219 * 142.81398 * 26 25 24 48 48 H 1.09004 * 110.37174 * 265.14864 * 26 25 24 49 49 H 1.07999 * 120.06249 * 180.27470 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4016 3.7283 8 7 2.6764 -1.5187 3.8511 9 14 1.4986 0.5628 5.2496 10 1 0.1717 0.0936 5.7234 11 1 2.5081 0.3535 6.3184 12 1 1.4226 2.0080 4.9166 13 6 2.0400 -0.7213 -1.2492 14 7 1.6523 0.0353 -2.4424 15 6 2.0079 -0.4300 -3.7103 16 6 2.7299 -1.6102 -3.8413 17 6 3.0818 -2.0699 -5.0953 18 6 2.7128 -1.3608 -6.2229 19 6 1.9963 -0.1788 -6.0980 20 8 1.6383 0.5195 -7.2075 21 6 2.0381 -0.0183 -8.4697 22 6 1.5481 0.8981 -9.5926 23 1 0.4784 1.0817 -9.4922 24 6 1.8594 0.2736 -10.9708 25 6 2.2411 1.4829 -11.8536 26 6 2.1146 2.6951 -10.9044 27 8 2.2769 2.1447 -9.5791 28 6 1.6411 0.2860 -4.8414 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7995 1.2055 34 1 2.9244 -1.8412 4.7317 35 1 1.6053 -1.7198 -1.2951 36 1 3.1263 -0.7995 -1.2056 37 1 1.1487 0.8594 -2.3518 38 1 3.0156 -2.1685 -2.9620 39 1 3.6425 -2.9875 -5.1952 40 1 2.9856 -1.7251 -7.2023 41 1 3.1252 -0.0894 -8.5064 42 1 1.6046 -1.0104 -8.5955 43 1 2.6948 -0.4225 -10.8947 44 1 0.9789 -0.2302 -11.3696 45 1 3.2651 1.3847 -12.2138 46 1 1.5500 1.5776 -12.6911 47 1 2.8991 3.4229 -11.1117 48 1 1.1319 3.1558 -11.0062 49 1 1.0798 1.2033 -4.7427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602487432.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:55 Heat of formation + Delta-G solvation = -78.146232 kcal Electronic energy + Delta-G solvation = -25567.519380 eV Core-core repulsion = 21879.899507 eV Total energy + Delta-G solvation = -3687.619874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.34190 -39.55856 -38.04950 -36.21472 -33.77178 -32.65485 -32.05192 -31.57771 -29.88609 -28.60944 -26.86742 -26.28901 -25.46978 -23.06410 -22.81803 -22.30372 -21.39458 -20.86022 -19.28117 -18.13856 -17.03367 -16.78381 -16.44774 -16.23521 -15.72107 -15.59059 -15.44206 -15.03387 -14.61242 -14.45647 -14.22157 -14.07828 -13.47506 -13.19168 -13.05077 -12.71491 -12.42065 -12.40284 -12.27797 -12.08688 -11.83268 -11.74190 -11.58820 -11.40345 -11.16961 -11.11690 -10.90510 -10.85413 -10.83076 -10.40532 -10.34357 -10.17184 -9.96576 -9.63898 -9.30856 -9.05348 -8.37452 -8.20483 -7.20514 -6.01989 -4.03803 1.61816 1.76612 2.93806 3.30786 3.37462 3.40308 3.40841 3.80746 4.02342 4.07222 4.31029 4.40701 4.44805 4.63896 4.69306 4.82071 4.94575 5.00948 5.03608 5.20270 5.23262 5.30101 5.33975 5.35419 5.40931 5.46541 5.50835 5.53863 5.58251 5.68881 5.71212 5.92803 6.03685 6.20563 6.36055 6.39019 6.41078 6.44409 6.46899 6.66356 6.72654 6.86652 7.00421 7.04526 7.45094 7.60857 7.61968 7.75522 7.96671 7.99786 8.39218 9.01843 9.59993 11.09376 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.001743 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.285632 B =16061.566038 C =16573.608204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 H 0.062 0.938 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.736 5.736 15 C 0.261 3.739 16 C -0.232 4.232 17 C -0.034 4.034 18 C -0.278 4.278 19 C 0.172 3.828 20 O -0.311 6.311 21 C 0.069 3.931 22 C 0.076 3.924 23 H 0.080 0.920 24 C -0.148 4.148 25 C -0.155 4.155 26 C 0.041 3.959 27 O -0.362 6.362 28 C -0.238 4.238 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.399 0.601 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 2.068 -31.553 31.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.002 3.998 14 N -0.362 5.362 15 C 0.154 3.846 16 C -0.255 4.255 17 C -0.053 4.053 18 C -0.299 4.299 19 C 0.127 3.873 20 O -0.225 6.225 21 C -0.007 4.007 22 C 0.018 3.982 23 H 0.098 0.902 24 C -0.186 4.186 25 C -0.192 4.192 26 C -0.036 4.036 27 O -0.281 6.281 28 C -0.262 4.262 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.372 2.103 -31.057 31.159 hybrid contribution -0.388 0.469 0.676 0.910 sum -1.760 2.572 -30.381 30.540 Atomic orbital electron populations 1.21724 0.95898 1.01113 1.00220 1.21452 0.95675 0.99859 0.94579 0.91924 1.19081 0.96288 0.95540 0.89827 1.21196 1.34967 1.08409 0.90925 0.92544 1.25011 0.95220 0.95092 0.99126 1.69956 1.38780 1.21163 1.23500 0.86611 0.78236 0.80388 0.82868 1.20707 1.21256 1.19922 1.21664 0.99192 0.95182 0.83740 1.45051 1.60676 1.27911 1.02569 1.17539 0.90526 0.91546 0.85001 1.20636 1.08019 0.98723 0.98134 1.20613 0.95508 0.97726 0.91465 1.20840 1.10840 0.98880 0.99292 1.18538 0.92894 0.90059 0.85847 1.86057 1.74161 1.49469 1.12765 1.22797 1.00484 0.96122 0.81276 1.23021 0.97036 0.84879 0.93262 0.90186 1.22911 1.02917 0.98668 0.94099 1.22936 1.02913 0.94606 0.98793 1.23435 1.01834 0.96111 0.82173 1.89256 1.73023 1.35180 1.30612 1.19622 1.13205 1.04520 0.88808 0.95055 0.93456 0.91762 0.96292 0.96409 0.93003 0.92457 0.92385 0.76634 0.85796 0.86203 0.86477 0.91105 0.90611 0.90180 0.89867 0.90430 0.90300 0.88892 0.92105 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.88 37.15 0.33 -2.07 16 2 C -0.10 -1.88 2.37 -90.62 -0.22 -2.10 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 5 C -0.52 -14.16 8.41 -34.44 -0.29 -14.44 16 6 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.12 4.30 -4.04 -0.02 2.10 16 14 N -0.74 -11.10 5.46 -58.64 -0.32 -11.42 16 15 C 0.26 3.92 6.65 -83.81 -0.56 3.36 16 16 C -0.23 -3.34 9.31 -39.35 -0.37 -3.71 16 17 C -0.03 -0.43 10.03 -39.63 -0.40 -0.83 16 18 C -0.28 -3.43 9.04 -39.39 -0.36 -3.79 16 19 C 0.17 2.38 6.68 -39.25 -0.26 2.12 16 20 O -0.31 -4.07 10.13 -19.46 -0.20 -4.27 16 21 C 0.07 0.64 4.34 37.16 0.16 0.80 16 22 C 0.08 0.62 3.57 -25.95 -0.09 0.53 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 C -0.15 -0.77 6.63 -25.16 -0.17 -0.94 16 25 C -0.15 -0.73 7.09 -25.16 -0.18 -0.91 16 26 C 0.04 0.27 7.63 37.93 0.29 0.56 16 27 O -0.36 -3.78 11.34 -35.27 -0.40 -4.18 16 28 C -0.24 -3.46 9.83 -39.24 -0.39 -3.85 16 29 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 36 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 37 H 0.40 5.60 7.67 -40.82 -0.31 5.28 16 38 H 0.12 1.76 6.73 -52.48 -0.35 1.40 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.16 6.29 -52.48 -0.33 0.83 16 41 H 0.07 0.64 7.67 -51.93 -0.40 0.25 16 42 H 0.08 0.55 7.65 -51.93 -0.40 0.16 16 43 H 0.08 0.37 7.87 -51.93 -0.41 -0.03 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -31.36 392.55 -10.35 -41.71 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.34 Total: 2.60 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.73 Total: -21.03 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.42 Total: -37.18 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.60 Total: -8.45 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.36 -10.35 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602487432.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.432 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds